jgi.p|Nanoce1779_2|571605, mRNA_1284 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571605
Unique NamemRNA_1284
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length833
Alignment locationscaffold_1:179496..180426 +

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Properties
Property NameValue
TranscriptId571691
TrackFilteredModels2
ProteinId571605
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:179496..180426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571605gene_1284Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571605mRNA_1284-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1284CDS_1284Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1284 ID=mRNA_1284|Name=jgi.p|Nanoce1779_2|571605|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
ACAGGTACATTCACCACAAAAACAATGCCGGGTGGCCTATCTTTGGCACA
AGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGTCTCGTGGCT
TTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCATGTAATCTCG
ATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAAGTTCGCTCA
AGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGCGCGTGTTTC
GTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGCCAGATGCTC
AGCATGGGTGATTTGACAGGGGGACAGATGGCACCTTTTCCAGGAGGCGT
AGTGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAGTGGGAGTGA
GTGGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTGGGTGTGCAA
GAAGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCATGCACTAAA
AAACTAGAAACTGCGACTGACGATTAAGAGATAATAATATGAATTGGGAA
GGTGAAGATTGTCATTTCTCCATCCTGTCTGGGTGCGACGTCTTTGTTTC
TTCTTTATTTCGTGTCGCCACTTTTCCCCCGTCCCTCCGCATACACGCAC
GCCACCTCGTAGTCAATTATACAATTTTGTCCTATCGTAACTATTGGTTG
AACGTATATCTATTGTCACCCCATCCCTGCTTGCCACCCTTTCTTTTCTC
CTTCCTCATCTTCCCCCTTATCCTGCTGCCAACCACACCTCCTTCTCAGC
TTTTCAACATCTACACTTAGTCATCATCTTGCG
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protein sequence of jgi.p|Nanoce1779_2|571605

>mRNA_1284-protein ID=mRNA_1284-protein|Name=jgi.p|Nanoce1779_2|571605|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MPGGLSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCA
PTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGG
QMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVV
TEPIHHALKN*
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mRNA from alignment at scaffold_1:179496..180426+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1284 ID=mRNA_1284|Name=jgi.p|Nanoce1779_2|571605|organism=Nannochloropsis oceanica|type=mRNA|length=931bp|location=Sequence derived from alignment at scaffold_1:179496..180426+ (Nannochloropsis oceanica)
ACAGGTACATTCACCACAAAAACAATGCCGGGTGGCCTATCTTTGGCACA
AGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGTCTCGTGGCT
TTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCATGTAATCTCG
ATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAAGTTCGCTCA
AGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGCGCGTGTTTC
GTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGCCAGATGCTC
AGCATGGGTGATTTGACAGGGGGACAGGTACGTATGTGGGTAATAACGGA
ACTTGTCTCCTGCGTTGTAGCTTTCTGTTACACCGTCATCTTCATTTTCT
TCTTATTCTTTCAAAACACGCGCAGATGGCACCTTTTCCAGGAGGCGTAG
TGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAGTGGGAGTGAGT
GGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTGGGTGTGCAAGA
AGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCATGCACTAAAAA
ACTAGAAACTGCGACTGACGATTAAGAGATAATAATATGAATTGGGAAGG
TGAAGATTGTCATTTCTCCATCCTGTCTGGGTGCGACGTCTTTGTTTCTT
CTTTATTTCGTGTCGCCACTTTTCCCCCGTCCCTCCGCATACACGCACGC
CACCTCGTAGTCAATTATACAATTTTGTCCTATCGTAACTATTGGTTGAA
CGTATATCTATTGTCACCCCATCCCTGCTTGCCACCCTTTCTTTTCTCCT
TCCTCATCTTCCCCCTTATCCTGCTGCCAACCACACCTCCTTCTCAGCTT
TTCAACATCTACACTTAGTCATCATCTTGCG
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Coding sequence (CDS) from alignment at scaffold_1:179496..180426+

>mRNA_1284 ID=mRNA_1284|Name=jgi.p|Nanoce1779_2|571605|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_1:179496..180426+ (Nannochloropsis oceanica)
ATGCCGGGTGGCCTATCTTTGGCACAAGCAGTCCGCATTTGCGAGGCTAC
TGTTGCAACGTGCACGTCTCGTGGCTTTGGTCCCATAACTGTCGTCGTCA
TGGACCCCGCAGGCCATGTAATCTCGATGCAACGGATGGACAATTGCGCC
CCGACTGCCTATCCCAAGTTCGCTCAAGCAAAGGCCTTTACGTGTGTCTC
GCTTGGAGTCTCCACGCGCGTGTTTCGTGATAAGTATACCGCTGCAAAGG
ATCCAGCAAAGTTTTGCCAGATGCTCAGCATGGGTGATTTGACAGGGGGA
CAGATGGCACCTTTTCCAGGAGGCGTAGTGATCAAGGGCGCAGAGGACGG
CGATATAGTGGGTGCAGTGGGAGTGAGTGGCGCTAGTGCAGACGAGGATG
AGTACTGTGCGTTGGTGGGTGTGCAAGAAGCTGGCTTGGAAGGCGTGGTC
ACTGAGCCGATACATCATGCACTAAAAAACTAGATGCCGGGTGGCCTATC
TTTGGCACAAGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGT
CTCGTGGCTTTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCAT
GTAATCTCGATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAA
GTTCGCTCAAGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGC
GCGTGTTTCGTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGC
CAGATGCTCAGCATGGGTGATTTGACAGGGGGACAGATGGCACCTTTTCC
AGGAGGCGTAGTGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAG
TGGGAGTGAGTGGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTG
GGTGTGCAAGAAGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCA
TGCACTAAAAAACTAG
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Synonyms
Publications