jgi.p|Nanoce1779_2|571603, mRNA_1283 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571603
Unique NamemRNA_1283
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1043
Alignment locationscaffold_1:178159..179201 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571689
TrackFilteredModels2
ProteinId571603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:178159..179201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571603gene_1283Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571603mRNA_1283-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1283CDS_1283Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1283 ID=mRNA_1283|Name=jgi.p|Nanoce1779_2|571603|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp
AGGTATTGCATCGCGCCCCGCCTGGGGCTTTAGTGCTAGCAAAGAACGTT
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGAAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGCAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACCTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTCGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGAAAAAAATATAG
AGAGAGGGGAATAAAGCGAGATCGAAATACTGAAATGTCTTCG
back to top

protein sequence of jgi.p|Nanoce1779_2|571603

>mRNA_1283-protein ID=mRNA_1283-protein|Name=jgi.p|Nanoce1779_2|571603|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MHACGRRLPSLLQSKPQVGRLIQRANSQTTTMHSASLNRPMLAKGDPFGR
LAQAEGYAAFRPDYPDSLMAGVEATLRAKGCLDGTGRDGSVLVDICTGNG
QVLRKLAKNFEHAKGFDQSVAQLGNATQGSNIEYKVADALAIPLPAGSAS
VVTCAQAMHWLNIPKFLEGVEKLLRPGGVVMVMGYPRSHIPKMPEADAAM
VEWYTSLDNVWDCDRLLLDREFAGTDFTPFVQVGKQTVEETYHMTPERLV
KYLDTWSSFRTWKENHPDVKPDTLEVLKARLEAALIKEEKELLPVEFLFF
AIILQRPGEAKK*
back to top

mRNA from alignment at scaffold_1:178159..179201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1283 ID=mRNA_1283|Name=jgi.p|Nanoce1779_2|571603|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp|location=Sequence derived from alignment at scaffold_1:178159..179201- (Nannochloropsis oceanica)
AGGTATTGCATCGCGCCCCGCCTGGGGCTTTAGTGCTAGCAAAGAACGTT
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGAAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGCAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACCTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTCGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGAAAAAAATATAG
AGAGAGGGGAATAAAGCGAGATCGAAATACTGAAATGTCTTCG
back to top

Coding sequence (CDS) from alignment at scaffold_1:178159..179201-

>mRNA_1283 ID=mRNA_1283|Name=jgi.p|Nanoce1779_2|571603|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_1:178159..179201- (Nannochloropsis oceanica)
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGAAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGCAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACCTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTCGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGA
back to top
Synonyms
Publications