jgi.p|Nanoce1779_2|645337, mRNA_1282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|645337
Unique NamemRNA_1282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length895
Alignment locationscaffold_1:177186..178080 +

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Properties
Property NameValue
TranscriptId645423
TrackFilteredModels2
ProteinId645337
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:177186..178080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645337gene_1282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645337mRNA_1282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1282CDS_1282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1282 ID=mRNA_1282|Name=jgi.p|Nanoce1779_2|645337|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
CCCTTCTCCCATTCATGAAATGGCCTTTATAGGGAAAAGTCATTATAGAT
GGGGCACAATTCTTGTTCGGGACTGGGACTGACACGCCCGCAATCACAGC
CACTTTTAGAACCAAAACTAACGACTTACTCTACAACCACAGTGAGCCAT
GCCAGGCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCG
TTCCATCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGG
CAGGACGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCC
CCGCCCCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTG
AATTTAAGAAGATGTGGAAAAGCGTGATGGATCTGGGGGCGGCCCAATTG
ACAGGCCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGG
TGGTAAGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCA
AGCTCGCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAG
GAATCGGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGC
CAGTGAGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGAC
GGATTGGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATG
TTGTACTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGG
CGGTGGTAGCGGCGGTGGGGAAAGGGGCGGGGGGAGAGTGATGGGAGGAG
GAAGAGGAAGAGGAAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGA
GTGAGTATAGGTAGTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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protein sequence of jgi.p|Nanoce1779_2|645337

>mRNA_1282-protein ID=mRNA_1282-protein|Name=jgi.p|Nanoce1779_2|645337|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MPGKHPRPPVHVVVAPSVPSPYQYKQQLQREKDRQDGGSRNSSSNSSSKR
PRPDRVPSNPTAAQERAEFKKMWKSVMDLGAAQLTGHEKKAYEARRIVEL
GGKAPTAIKTPFNILIGKLAKHKHRDARRDNELKESGVVVAKKRQSAAAL
ASEVLDDGGRRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRR
GGGSGGGERGGGRVMGGGRGRGRGGGKGMGGSRGVSIGSGRGGGRGRR*
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mRNA from alignment at scaffold_1:177186..178080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1282 ID=mRNA_1282|Name=jgi.p|Nanoce1779_2|645337|organism=Nannochloropsis oceanica|type=mRNA|length=895bp|location=Sequence derived from alignment at scaffold_1:177186..178080+ (Nannochloropsis oceanica)
CCCTTCTCCCATTCATGAAATGGCCTTTATAGGGAAAAGTCATTATAGAT
GGGGCACAATTCTTGTTCGGGACTGGGACTGACACGCCCGCAATCACAGC
CACTTTTAGAACCAAAACTAACGACTTACTCTACAACCACAGTGAGCCAT
GCCAGGCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCG
TTCCATCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGG
CAGGACGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCC
CCGCCCCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTG
AATTTAAGAAGATGTGGAAAAGCGTGATGGATCTGGGGGCGGCCCAATTG
ACAGGCCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGG
TGGTAAGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCA
AGCTCGCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAG
GAATCGGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGC
CAGTGAGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGAC
GGATTGGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATG
TTGTACTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGG
CGGTGGTAGCGGCGGTGGGGAAAGGGGCGGGGGGAGAGTGATGGGAGGAG
GAAGAGGAAGAGGAAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGA
GTGAGTATAGGTAGTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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Coding sequence (CDS) from alignment at scaffold_1:177186..178080+

>mRNA_1282 ID=mRNA_1282|Name=jgi.p|Nanoce1779_2|645337|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_1:177186..178080+ (Nannochloropsis oceanica)
ATGCCAGGCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTC
CGTTCCATCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACC
GGCAGGACGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGC
CCCCGCCCCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAACGCGC
TGAATTTAAGAAGATGTGGAAAAGCGTGATGGATCTGGGGGCGGCCCAAT
TGACAGGCCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTG
GGTGGTAAGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTGATTGG
CAAGCTCGCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGAACTGA
AGGAATCGGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTG
GCCAGTGAGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGCAGCGG
ACGGATTGGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCA
TGTTGTACTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCAGGCGT
GGCGGTGGTAGCGGCGGTGGGGAAAGGGGCGGGGGGAGAGTGATGGGAGG
AGGAAGAGGAAGAGGAAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGG
GAGTGAGTATAGGTAGTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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Synonyms
Publications