jgi.p|Nanoce1779_2|571595, mRNA_1281 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571595
Unique Name	mRNA_1281
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1824
Alignment location	scaffold_1:176179..178002 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571681
Track	FilteredModels2
ProteinId	571595

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:176179..178002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571595	gene_1281	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571595	mRNA_1281-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1281	CDS_1281	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:176179..178002+
coding sequence from alignment at scaffold_1:176179..178002+

mRNA sequence

>mRNA_1281 ID=mRNA_1281|Name=jgi.p|Nanoce1779_2|571595|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
GAGTGAGTTGGGGTCGAGCGAGTTAACGAGAGAAGATTGATAGGCCACCT
CCTTCCACTGGTCTGGAACAAGGTGCTGACGAGGACGAAGCGCCTGTAAG
TGTACTGTGCACACCGTCAGGGGTGCATAAAGTCAAGTACATCGCCGTCA
AATTCATGTCGCAGCTTTCCCTCCGAAAACGCCGGCCTTGGTTGCCCCGC
CCCATCGATCACACTGTGATGATAACACGCAGCCCACTACTCCTATTCCA
GCCCCCCCCACCCCCTGGTACAATTCCCTTTGTCAAATCCAGGGCATGTC
TAACTCCCAAGATGTCCCAACACAAGCATAACTATCAGCACCACCACCAT
CTCCACCAGCAGCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCA
CCAGGAGCAGTACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTAT
CAGCACTACCGCCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCAC
CTGACAAGAATTATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCG
CCTCGCGTTACCTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCAT
ACCAGGGCCTGCGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACA
GGCCAACCGTCGGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACT
CCTGGCAACCATGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATC
GAGGTAAAGCACCGCTGCGACCCCATCCCCTTGGCGGAAGCCGGCCAGAA
GGACCTCGCCAGAATCATACTGCAGCATGCTCAGTCTCTTGGGGGTCTTC
AGGTCATTAAGAAGGAACAGTACCATATAACTACGTTGTGCATGCGAGAG
AAAGCATCATAACGAGCTTCGGGTTGCGTTCTCCACTCGCTTCTCGAAGA
ACCCGTTGTTGCGAAGGAACACCCCAGCTATCGAAATTTTACTTGAGTTG
TTCCCCGCCCTTCTCCCATTCATGAAATGGCCTTTATAGGGAAAAGTCAT
TATAGATGGGGCACAATTCTTGTTCGGGACTGGGACTGACACGCCCGCAA
TCACAGCCACTTTTAGAACCAAAACTAACGACTTACTCTACAACCACAGT
GAGCCATGCCAGGCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCG
CCTTCCGTTCCATCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAA
GGACCGGCAGGACGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCA
AGCGCCCCCGCCCCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAA
CGCGCTGAATTTAAGAAGATGTGGAAAAGCGTGATGGATCTGGGGGCGGC
CCAATTGACAGGCCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCG
AGCTGGGTGGTAAGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTG
ATTGGCAAGCTCGCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGA
ACTGAAGGAATCGGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGG
CATTGGCCAGTGAGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGC
AGCGGACGGATTGGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGG
GGGCATGTTGTACTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCA
GGCGTGGCGGTGGTAGCGGCGGTGGGGAAAGGGGCGGGGGGAGAGTGATG
GGAGGAGGAAGAGGAAGAGGAAGA

protein sequence of jgi.p|Nanoce1779_2|571595

>mRNA_1281-protein ID=mRNA_1281-protein|Name=jgi.p|Nanoce1779_2|571595|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MSQLSLRKRRPWLPRPIDHTVMITRSPLLLFQPPPPPGTIPFVKSRACLT
PKMSQHKHNYQHHHHLHQQHHNHQNQQQHWEHQEQYQSTLPVGLIARLSA
LPPPPLNQQEHGQEHLTRIILTETEGSAVPPRLALPGRPQFWPRCLISYQ
GLRLEERRPSLFHLTGQPSANFLSIPTSRYELLATMTTDGERAMFSSHRG
KAPLRPHPLGGSRPEGPRQNHTAACSVSWGSSGH*

mRNA from alignment at scaffold_1:176179..178002+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1281 ID=mRNA_1281|Name=jgi.p|Nanoce1779_2|571595|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp|location=Sequence derived from alignment at scaffold_1:176179..178002+ (Nannochloropsis oceanica)
GAGTGAGTTGGGGTCGAGCGAGTTAACGAGAGAAGATTGATAGGCCACCT
CCTTCCACTGGTCTGGAACAAGGTGCTGACGAGGACGAAGCGCCTGTAAG
TGTACTGTGCACACCGTCAGGGGTGCATAAAGTCAAGTACATCGCCGTCA
AATTCATGTCGCAGCTTTCCCTCCGAAAACGCCGGCCTTGGTTGCCCCGC
CCCATCGATCACACTGTGATGATAACACGCAGCCCACTACTCCTATTCCA
GCCCCCCCCACCCCCTGGTACAATTCCCTTTGTCAAATCCAGGGCATGTC
TAACTCCCAAGATGTCCCAACACAAGCATAACTATCAGCACCACCACCAT
CTCCACCAGCAGCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCA
CCAGGAGCAGTACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTAT
CAGCACTACCGCCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCAC
CTGACAAGAATTATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCG
CCTCGCGTTACCTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCAT
ACCAGGGCCTGCGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACA
GGCCAACCGTCGGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACT
CCTGGCAACCATGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATC
GAGGTAAAGCACCGCTGCGACCCCATCCCCTTGGCGGAAGCCGGCCAGAA
GGACCTCGCCAGAATCATACTGCAGCATGCTCAGTCTCTTGGGGGTCTTC
AGGTCATTAAGAAGGAACAGTACCATATAACTACGTTGTGCATGCGAGAG
AAAGCATCATAACGAGCTTCGGGTTGCGTTCTCCACTCGCTTCTCGAAGA
ACCCGTTGTTGCGAAGGAACACCCCAGCTATCGAAATTTTACTTGAGTTG
TTCCCCGCCCTTCTCCCATTCATGAAATGGCCTTTATAGGGAAAAGTCAT
TATAGATGGGGCACAATTCTTGTTCGGGACTGGGACTGACACGCCCGCAA
TCACAGCCACTTTTAGAACCAAAACTAACGACTTACTCTACAACCACAGT
GAGCCATGCCAGGCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCG
CCTTCCGTTCCATCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAA
GGACCGGCAGGACGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCA
AGCGCCCCCGCCCCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAA
CGCGCTGAATTTAAGAAGATGTGGAAAAGCGTGATGGATCTGGGGGCGGC
CCAATTGACAGGCCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCG
AGCTGGGTGGTAAGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTG
ATTGGCAAGCTCGCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGA
ACTGAAGGAATCGGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGG
CATTGGCCAGTGAGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGC
AGCGGACGGATTGGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGG
GGGCATGTTGTACTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCA
GGCGTGGCGGTGGTAGCGGCGGTGGGGAAAGGGGCGGGGGGAGAGTGATG
GGAGGAGGAAGAGGAAGAGGAAGA

Coding sequence (CDS) from alignment at scaffold_1:176179..178002+

>mRNA_1281 ID=mRNA_1281|Name=jgi.p|Nanoce1779_2|571595|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_1:176179..178002+ (Nannochloropsis oceanica)
ATGTCGCAGCTTTCCCTCCGAAAACGCCGGCCTTGGTTGCCCCGCCCCAT
CGATCACACTGTGATGATAACACGCAGCCCACTACTCCTATTCCAGCCCC
CCCCACCCCCTGGTACAATTCCCTTTGTCAAATCCAGGGCATGTCTAACT
CCCAAGATGTCCCAACACAAGCATAACTATCAGCACCACCACCATCTCCA
CCAGCAGCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCACCAGG
AGCAGTACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTATCAGCA
CTACCGCCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCACCTGAC
AAGAATTATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCGCCTCG
CGTTACCTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCATACCAG
GGCCTGCGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACAGGCCA
ACCGTCGGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACTCCTGG
CAACCATGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATCGAGGT
AAAGCACCGCTGCGACCCCATCCCCTTGGCGGAAGCCGGCCAGAAGGACC
TCGCCAGAATCATACTGCAGCATGCTCAGTCTCTTGGGGGTCTTCAGGTC
ATTAA

Synonyms

Publications