jgi.p|Nanoce1779_2|571591, mRNA_1280 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571591
Unique Name	mRNA_1280
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1553
Alignment location	scaffold_1:174461..176013 +

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Properties


Property Name	Value
TranscriptId	571677
Track	FilteredModels2
ProteinId	571591

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:174461..176013 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571591	gene_1280	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571591	mRNA_1280-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1280	CDS_1280	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:174461..176013+
coding sequence from alignment at scaffold_1:174461..176013+

mRNA sequence

>mRNA_1280 ID=mRNA_1280|Name=jgi.p|Nanoce1779_2|571591|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
GGCAGAGCATAGCGTAATGTCGGAACCAATCCAAAACTTCCACTGAAAAG
GCCCAGAGGGAGGAGGAGGAGGAGGAGGTGGACATGTTGCTGTTGCTGCT
ACTTTTGTTGCTATCATTTATTTTCATCCTTCTCGTTGTCTGCTTCTCAC
ATACCTTCCCCTCTTTCCCATTTAGAACAAGCCGCAGCGCTGCATCCTCG
TACATGGCTATCACCCCCTCAAATTGTTCAATCGCTCGTTTCTCCGTTCC
TCCTTCTCTTCCACCATCTCGTCCTTCCCCCCCTATTGCTTTCCCTGCCC
TTTTCTCGTAATAAGTACCGGCACGCCATAGTTGAGAAATGAGATGAGGG
ATGGAGGGAGTACCTGTCTCAGAAGCTAGCGTCACACACAAGGAGCGCAA
GCGGAGGGCGTCCTTACTAACCCTGCCATTGCTGTTGCTGCTGGTGTTGC
TGCTGGTGTTGCTTCCTCTTCCGGCTAATTCCTCTGCTTCCTCTTGTTGC
CTGTCCATCACAGCTGCTGCTTTCCAAACGGCACGATATAGTCGCTCTGC
GTATTCATGTGCCATGTCTGTGTCTTGTTGTGTTGGTGGTAATCCTTCTC
TTCTTCCTCCCCTTCCTCCAGCCTTCAAAGCACCGAGCCAAAGCAGACAC
TCCTGGACCACCCCCTCGACAACCTCCACAAATGGACCCTCCCCTTCTCC
ACTTTTCTCCTCCTCCTGCTGCTGCCGGTGCTCTTCCATGTTTCTCAGCA
TGTGCATTTCTACACGGGAACGCAGCCCATTCACCATCGCGCCACAAACG
AGGCGGACAAGCGTCGGGTCGCACACATAGGGAGGAGGACCAAAATCATA
CCCAGCATTTGAGGATGGACTTCGCTCCTTTATTCTCTCAGGTGCCGCAG
AAGAGGAGGAGGAGCCGTTTTTTTTCTGGCTGATGCTGCTGCTCGTGCTA
ATGGTAAGGCTGCTCACATTGTCTGCCATGGCCTTGGTCCTGCTGCCGTT
GCCGGTAGGGGCAAGAGGCTCACGTTTTGTGCCCTCGGCGCCCCAATCGT
CCTCTTCTGCACCAAGAACCATCAAACCTTCCTCCATTTCCTTATTGCCG
GCGTTGCTGCTGCAGCCGCTCACAACTTGTCTAATCCGCCCTGCCAGCAT
TCGTGTCAATGCCTGAACCTCCCGATGCTGCCCTAGTTCCACTCCACGGG
CAATGCCATGGTACAGAACTCGTTCAAAACCCAGTTTGCCACCCGCCGTC
ATGGTTCCGGCAGCGCCACTATTACTATCGGATGCGGTCGCGGCAGCGTT
TTCCCCACCACCGGCCGGGATGCATGGCGCCAGTGCGTGTACGATCAGGG
ATGCGGCGCGGTACAAGGTAAGGCGCAAAATTTCCTGTTGCTCTGCTGCC
GCTGGAGCACTCGTCAAAGCTTGCAAACAGGCTTGTGCGACCTTAAGCAG
GGCATGGATTTCGCGCTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCGGCTGGTACTGCTGGTCGTCCCGATGGCCACTCCTTGGACCCTC
TCC

protein sequence of jgi.p|Nanoce1779_2|571591

>mRNA_1280-protein ID=mRNA_1280-protein|Name=jgi.p|Nanoce1779_2|571591|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MEGVPVSEASVTHKERKRRASLLTLPLLLLLVLLLVLLPLPANSSASSCC
LSITAAAFQTARYSRSAYSCAMSVSCCVGGNPSLLPPLPPAFKAPSQSRH
SWTTPSTTSTNGPSPSPLFSSSCCCRCSSMFLSMCISTRERSPFTIAPQT
RRTSVGSHT*

mRNA from alignment at scaffold_1:174461..176013+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1280 ID=mRNA_1280|Name=jgi.p|Nanoce1779_2|571591|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at scaffold_1:174461..176013+ (Nannochloropsis oceanica)
GGCAGAGCATAGCGTAATGTCGGAACCAATCCAAAACTTCCACTGAAAAG
GCCCAGAGGGAGGAGGAGGAGGAGGAGGTGGACATGTTGCTGTTGCTGCT
ACTTTTGTTGCTATCATTTATTTTCATCCTTCTCGTTGTCTGCTTCTCAC
ATACCTTCCCCTCTTTCCCATTTAGAACAAGCCGCAGCGCTGCATCCTCG
TACATGGCTATCACCCCCTCAAATTGTTCAATCGCTCGTTTCTCCGTTCC
TCCTTCTCTTCCACCATCTCGTCCTTCCCCCCCTATTGCTTTCCCTGCCC
TTTTCTCGTAATAAGTACCGGCACGCCATAGTTGAGAAATGAGATGAGGG
ATGGAGGGAGTACCTGTCTCAGAAGCTAGCGTCACACACAAGGAGCGCAA
GCGGAGGGCGTCCTTACTAACCCTGCCATTGCTGTTGCTGCTGGTGTTGC
TGCTGGTGTTGCTTCCTCTTCCGGCTAATTCCTCTGCTTCCTCTTGTTGC
CTGTCCATCACAGCTGCTGCTTTCCAAACGGCACGATATAGTCGCTCTGC
GTATTCATGTGCCATGTCTGTGTCTTGTTGTGTTGGTGGTAATCCTTCTC
TTCTTCCTCCCCTTCCTCCAGCCTTCAAAGCACCGAGCCAAAGCAGACAC
TCCTGGACCACCCCCTCGACAACCTCCACAAATGGACCCTCCCCTTCTCC
ACTTTTCTCCTCCTCCTGCTGCTGCCGGTGCTCTTCCATGTTTCTCAGCA
TGTGCATTTCTACACGGGAACGCAGCCCATTCACCATCGCGCCACAAACG
AGGCGGACAAGCGTCGGGTCGCACACATAGGGAGGAGGACCAAAATCATA
CCCAGCATTTGAGGATGGACTTCGCTCCTTTATTCTCTCAGGTGCCGCAG
AAGAGGAGGAGGAGCCGTTTTTTTTCTGGCTGATGCTGCTGCTCGTGCTA
ATGGTAAGGCTGCTCACATTGTCTGCCATGGCCTTGGTCCTGCTGCCGTT
GCCGGTAGGGGCAAGAGGCTCACGTTTTGTGCCCTCGGCGCCCCAATCGT
CCTCTTCTGCACCAAGAACCATCAAACCTTCCTCCATTTCCTTATTGCCG
GCGTTGCTGCTGCAGCCGCTCACAACTTGTCTAATCCGCCCTGCCAGCAT
TCGTGTCAATGCCTGAACCTCCCGATGCTGCCCTAGTTCCACTCCACGGG
CAATGCCATGGTACAGAACTCGTTCAAAACCCAGTTTGCCACCCGCCGTC
ATGGTTCCGGCAGCGCCACTATTACTATCGGATGCGGTCGCGGCAGCGTT
TTCCCCACCACCGGCCGGGATGCATGGCGCCAGTGCGTGTACGATCAGGG
ATGCGGCGCGGTACAAGGTAAGGCGCAAAATTTCCTGTTGCTCTGCTGCC
GCTGGAGCACTCGTCAAAGCTTGCAAACAGGCTTGTGCGACCTTAAGCAG
GGCATGGATTTCGCGCTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCGGCTGGTACTGCTGGTCGTCCCGATGGCCACTCCTTGGACCCTC
TCC

Coding sequence (CDS) from alignment at scaffold_1:174461..176013+

>mRNA_1280 ID=mRNA_1280|Name=jgi.p|Nanoce1779_2|571591|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_1:174461..176013+ (Nannochloropsis oceanica)
ATGGAGGGAGTACCTGTCTCAGAAGCTAGCGTCACACACAAGGAGCGCAA
GCGGAGGGCGTCCTTACTAACCCTGCCATTGCTGTTGCTGCTGGTGTTGC
TGCTGGTGTTGCTTCCTCTTCCGGCTAATTCCTCTGCTTCCTCTTGTTGC
CTGTCCATCACAGCTGCTGCTTTCCAAACGGCACGATATAGTCGCTCTGC
GTATTCATGTGCCATGTCTGTGTCTTGTTGTGTTGGTGGTAATCCTTCTC
TTCTTCCTCCCCTTCCTCCAGCCTTCAAAGCACCGAGCCAAAGCAGACAC
TCCTGGACCACCCCCTCGACAACCTCCACAAATGGACCCTCCCCTTCTCC
ACTTTTCTCCTCCTCCTGCTGCTGCCGGTGCTCTTCCATGTTTCTCAGCA
TGTGCATTTCTACACGGGAACGCAGCCCATTCACCATCGCGCCACAAACG
AGGCGGACAAGCGTCGGGTCGCACACATAG

Synonyms

Publications