jgi.p|Nanoce1779_2|627647, mRNA_128 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627647
Unique Name	mRNA_128
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1916
Alignment location	scaffold_3:334897..336812 -

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Properties


Property Name	Value
TranscriptId	627733
Track	FilteredModels2
ProteinId	627647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:334897..336812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627647	gene_128	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627647	mRNA_128-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_128	CDS_128	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:334897..336812-
coding sequence from alignment at scaffold_3:334897..336812-

mRNA sequence

>mRNA_128 ID=mRNA_128|Name=jgi.p|Nanoce1779_2|627647|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp
GTTAAATGCAGTTGGCTACGTGCCCTCGCTGGCGGCGATTATCCCATTTT
TAATTTAAATCCATTGTTCTGATATTCCAAACACAGGCCAAAAAGCTAAT
CGAAAATAAAACAAAGGCGTGGACGGATCTTCAATTATCAGTCATTACCT
GCTATCCAAATCCACCTTGCCTTCGCTGGCCCTCGTTGCTGACCCCCGCA
GAACACGCTTCTCAACGGCTGCTTTCCAGACTCTTTCCCTCGACCTCGAC
CACCCCAAGGCAATATAACAAATGCGACGCCGCCATGTCAGCAACGGAAA
CGACCAGGATGACCTGGATCTGAGTGCTAGCGTCCATGCCGAGTCACTTC
CGACACGCAAATATTCGTTTGATTCCAACGAACCTCTATTGACCTTGCAC
CAGACGTTGACGCCGGACGGCGTCAGCCTGACCCTCAAACAATACGTACC
CCGCGTTTCATCCACCACTAGCACCAAAACACCCCTTGTTCCCATCATTC
TTGCGCATGGCCTCGCTGGAAACTCCTGCCCATTCGACGTGACCAAGACA
CGCTCCCTCGCCTATTCCCTGTGCGAAGCAGGTTACACGGTCTGGCTTTC
CAACATGCGAGGCTCCGGGACAAGCGACCGACCCAGCAAGGCTTGGACTT
TGGATGACTATATCTATCAAGACGTACCGACCATTGTGCACTTTGTTCGG
AATGCCCATGGTGACATCCCCCAAGTCCATTATTTGGGGCACTCCCTAGG
AGGAATCTGCATCTTATGCGCGCTCGCCGACGTCACCCCGTCCCTCCAAC
CCTACATCAAGTCAGTAATCACCATCGCCAGCTCCTTAGAATACAATCAA
AGTGTCTGGCGCTTCCTCGCCCCTTTAGTACCGCTTGCACGGATGATAAC
GTCTGATAAGGCCATTTCACCCGAAGCTGCTACCACTTTTGCCCTCTCCT
TCCTCTCCCTTGTCCCGTCTGTTGTATCAACAGCCAAAAAGATCGATAAG
GACACCTTGGCCTCCTATCAGAAGAGTCTCGAGCCGGTTTCCTTGCCCGT
GATAATGCAACTAGGCACGAGCATTGAAGCAGGAGGATTGGCAATCTCCC
CTCGAAGGATGGAGGAGCAGAAGCATCAGTCGGAAGGGGTTCTGATGAAA
AATCGGTTGAGGCCCACCCACTCTCGGTCATCCGACGATTGGTTCGAAGA
AGAAAAAGAGGAGGGCGAGGACGAGGGAAGAAGGGAGGTTGTGGGGCAGA
GAGAGGAAGAGATCAAGCCGAAGGCTGCGGCGCGTTTTCTGGACATCATG
CACAAGATCCAGACGCCTATACTTGCGATCGCGGGTAATAATGACGTGCA
ATGCGGAGAAGAGGCGGTGTTGCGAACCTTAGATGCGGTGGGAAGTGCAA
GGAAGAGGTATGTATTGGTGGGGGGTGTGCAGGAGGAGGAGGGGAGGACA
TATGGGCATCTGGATTTGTTGTTGGGAGAACGCGCTAAGGAAGATGTTTT
TTGCCATATTGTTTCTTGGGTCCAAGAGGCCGATTCGGGTGTTTGGGAAA
GGAGGGTAAAGAGGGAGAAGGAGGAGGAGGGAGAGGAAGAGGAGGAGGAG
GAGGAAGTGGTTGAGGTGGATGAGAGACGCTTTTCGGAGTCGTGTAGAAG
TATCGGGTTGTAGAGTAGAGAATGGAAGAGGGAACTGGAACATACTTCTC
ATTCTACTTAGGAGAAAAGGATGAGTAAAAGCAGGGCGCATTGCATGCTT
CGAGGTTGTGTTAATGTAAGCAAGGAATGTAAACCTGCCGCCTGAAAGCA
CCCAAAATTAAAGGCTCAACACAAACGAAGAGCTAGCGAGGAGAAAGAGG
AGGAGGAAGGGGATATACATAGAATGTGTGCATATGATTTCTGAGATGAA
TGCAAGGAAATTGGTC

protein sequence of jgi.p|Nanoce1779_2|627647

>mRNA_128-protein ID=mRNA_128-protein|Name=jgi.p|Nanoce1779_2|627647|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MRRRHVSNGNDQDDLDLSASVHAESLPTRKYSFDSNEPLLTLHQTLTPDG
VSLTLKQYVPRVSSTTSTKTPLVPIILAHGLAGNSCPFDVTKTRSLAYSL
CEAGYTVWLSNMRGSGTSDRPSKAWTLDDYIYQDVPTIVHFVRNAHGDIP
QVHYLGHSLGGICILCALADVTPSLQPYIKSVITIASSLEYNQSVWRFLA
PLVPLARMITSDKAISPEAATTFALSFLSLVPSVVSTAKKIDKDTLASYQ
KSLEPVSLPVIMQLGTSIEAGGLAISPRRMEEQKHQSEGVLMKNRLRPTH
SRSSDDWFEEEKEEGEDEGRREVVGQREEEIKPKAAARFLDIMHKIQTPI
LAIAGNNDVQCGEEAVLRTLDAVGSARKRYVLVGGVQEEEGRTYGHLDLL
LGERAKEDVFCHIVSWVQEADSGVWERRVKREKEEEGEEEEEEEEVVEVD
ERRFSESCRSIGL*

mRNA from alignment at scaffold_3:334897..336812-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_128 ID=mRNA_128|Name=jgi.p|Nanoce1779_2|627647|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp|location=Sequence derived from alignment at scaffold_3:334897..336812- (Nannochloropsis oceanica)
GTTAAATGCAGTTGGCTACGTGCCCTCGCTGGCGGCGATTATCCCATTTT
TAATTTAAATCCATTGTTCTGATATTCCAAACACAGGCCAAAAAGCTAAT
CGAAAATAAAACAAAGGCGTGGACGGATCTTCAATTATCAGTCATTACCT
GCTATCCAAATCCACCTTGCCTTCGCTGGCCCTCGTTGCTGACCCCCGCA
GAACACGCTTCTCAACGGCTGCTTTCCAGACTCTTTCCCTCGACCTCGAC
CACCCCAAGGCAATATAACAAATGCGACGCCGCCATGTCAGCAACGGAAA
CGACCAGGATGACCTGGATCTGAGTGCTAGCGTCCATGCCGAGTCACTTC
CGACACGCAAATATTCGTTTGATTCCAACGAACCTCTATTGACCTTGCAC
CAGACGTTGACGCCGGACGGCGTCAGCCTGACCCTCAAACAATACGTACC
CCGCGTTTCATCCACCACTAGCACCAAAACACCCCTTGTTCCCATCATTC
TTGCGCATGGCCTCGCTGGAAACTCCTGCCCATTCGACGTGACCAAGACA
CGCTCCCTCGCCTATTCCCTGTGCGAAGCAGGTTACACGGTCTGGCTTTC
CAACATGCGAGGCTCCGGGACAAGCGACCGACCCAGCAAGGCTTGGACTT
TGGATGACTATATCTATCAAGACGTACCGACCATTGTGCACTTTGTTCGG
AATGCCCATGGTGACATCCCCCAAGTCCATTATTTGGGGCACTCCCTAGG
AGGAATCTGCATCTTATGCGCGCTCGCCGACGTCACCCCGTCCCTCCAAC
CCTACATCAAGTCAGTAATCACCATCGCCAGCTCCTTAGAATACAATCAA
AGTGTCTGGCGCTTCCTCGCCCCTTTAGTACCGCTTGCACGGATGATAAC
GTCTGATAAGGCCATTTCACCCGAAGCTGCTACCACTTTTGCCCTCTCCT
TCCTCTCCCTTGTCCCGTCTGTTGTATCAACAGCCAAAAAGATCGATAAG
GACACCTTGGCCTCCTATCAGAAGAGTCTCGAGCCGGTTTCCTTGCCCGT
GATAATGCAACTAGGCACGAGCATTGAAGCAGGAGGATTGGCAATCTCCC
CTCGAAGGATGGAGGAGCAGAAGCATCAGTCGGAAGGGGTTCTGATGAAA
AATCGGTTGAGGCCCACCCACTCTCGGTCATCCGACGATTGGTTCGAAGA
AGAAAAAGAGGAGGGCGAGGACGAGGGAAGAAGGGAGGTTGTGGGGCAGA
GAGAGGAAGAGATCAAGCCGAAGGCTGCGGCGCGTTTTCTGGACATCATG
CACAAGATCCAGACGCCTATACTTGCGATCGCGGGTAATAATGACGTGCA
ATGCGGAGAAGAGGCGGTGTTGCGAACCTTAGATGCGGTGGGAAGTGCAA
GGAAGAGGTATGTATTGGTGGGGGGTGTGCAGGAGGAGGAGGGGAGGACA
TATGGGCATCTGGATTTGTTGTTGGGAGAACGCGCTAAGGAAGATGTTTT
TTGCCATATTGTTTCTTGGGTCCAAGAGGCCGATTCGGGTGTTTGGGAAA
GGAGGGTAAAGAGGGAGAAGGAGGAGGAGGGAGAGGAAGAGGAGGAGGAG
GAGGAAGTGGTTGAGGTGGATGAGAGACGCTTTTCGGAGTCGTGTAGAAG
TATCGGGTTGTAGAGTAGAGAATGGAAGAGGGAACTGGAACATACTTCTC
ATTCTACTTAGGAGAAAAGGATGAGTAAAAGCAGGGCGCATTGCATGCTT
CGAGGTTGTGTTAATGTAAGCAAGGAATGTAAACCTGCCGCCTGAAAGCA
CCCAAAATTAAAGGCTCAACACAAACGAAGAGCTAGCGAGGAGAAAGAGG
AGGAGGAAGGGGATATACATAGAATGTGTGCATATGATTTCTGAGATGAA
TGCAAGGAAATTGGTC

Coding sequence (CDS) from alignment at scaffold_3:334897..336812-

>mRNA_128 ID=mRNA_128|Name=jgi.p|Nanoce1779_2|627647|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_3:334897..336812- (Nannochloropsis oceanica)
ATGCGACGCCGCCATGTCAGCAACGGAAACGACCAGGATGACCTGGATCT
GAGTGCTAGCGTCCATGCCGAGTCACTTCCGACACGCAAATATTCGTTTG
ATTCCAACGAACCTCTATTGACCTTGCACCAGACGTTGACGCCGGACGGC
GTCAGCCTGACCCTCAAACAATACGTACCCCGCGTTTCATCCACCACTAG
CACCAAAACACCCCTTGTTCCCATCATTCTTGCGCATGGCCTCGCTGGAA
ACTCCTGCCCATTCGACGTGACCAAGACACGCTCCCTCGCCTATTCCCTG
TGCGAAGCAGGTTACACGGTCTGGCTTTCCAACATGCGAGGCTCCGGGAC
AAGCGACCGACCCAGCAAGGCTTGGACTTTGGATGACTATATCTATCAAG
ACGTACCGACCATTGTGCACTTTGTTCGGAATGCCCATGGTGACATCCCC
CAAGTCCATTATTTGGGGCACTCCCTAGGAGGAATCTGCATCTTATGCGC
GCTCGCCGACGTCACCCCGTCCCTCCAACCCTACATCAAGTCAGTAATCA
CCATCGCCAGCTCCTTAGAATACAATCAAAGTGTCTGGCGCTTCCTCGCC
CCTTTAGTACCGCTTGCACGGATGATAACGTCTGATAAGGCCATTTCACC
CGAAGCTGCTACCACTTTTGCCCTCTCCTTCCTCTCCCTTGTCCCGTCTG
TTGTATCAACAGCCAAAAAGATCGATAAGGACACCTTGGCCTCCTATCAG
AAGAGTCTCGAGCCGGTTTCCTTGCCCGTGATAATGCAACTAGGCACGAG
CATTGAAGCAGGAGGATTGGCAATCTCCCCTCGAAGGATGGAGGAGCAGA
AGCATCAGTCGGAAGGGGTTCTGATGAAAAATCGGTTGAGGCCCACCCAC
TCTCGGTCATCCGACGATTGGTTCGAAGAAGAAAAAGAGGAGGGCGAGGA
CGAGGGAAGAAGGGAGGTTGTGGGGCAGAGAGAGGAAGAGATCAAGCCGA
AGGCTGCGGCGCGTTTTCTGGACATCATGCACAAGATCCAGACGCCTATA
CTTGCGATCGCGGGTAATAATGACGTGCAATGCGGAGAAGAGGCGGTGTT
GCGAACCTTAGATGCGGTGGGAAGTGCAAGGAAGAGGTATGTATTGGTGG
GGGGTGTGCAGGAGGAGGAGGGGAGGACATATGGGCATCTGGATTTGTTG
TTGGGAGAACGCGCTAAGGAAGATGTTTTTTGCCATATTGTTTCTTGGGT
CCAAGAGGCCGATTCGGGTGTTTGGGAAAGGAGGGTAAAGAGGGAGAAGG
AGGAGGAGGGAGAGGAAGAGGAGGAGGAGGAGGAAGTGGTTGAGGTGGAT
GAGAGACGCTTTTCGGAGTCGTGTAGAAGTATCGGGTTGTAG

Synonyms

Publications