jgi.p|Nanoce1779_2|571590, mRNA_1279 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571590
Unique NamemRNA_1279
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length395
Alignment locationscaffold_1:174215..174609 +

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Properties
Property NameValue
TranscriptId571676
TrackFilteredModels2
ProteinId571590
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:174215..174609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571590gene_1279Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571590mRNA_1279-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1279CDS_1279Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1279 ID=mRNA_1279|Name=jgi.p|Nanoce1779_2|571590|organism=Nannochloropsis oceanica|type=mRNA|length=395bp
GAATATTTAAGCCCTTTTCCAAGTTATGTTCCTCCTCCTCCTCCTCCCTT
TTCTTCTTATTACTGTTACTACAGCCCCCCTTCTGCTGCTGCAGCTGCTG
CAGCTGTACAGTAGCCGCCAGTACCTGCAACGTCACACGAACCATCCGCA
GCCTTGCGTCTTCTTTCTGCCCTTCTCTGCCGTCACTGCATCGTTGCCTA
GCGCGGTGGAGGAGAGCAATCGCCTGCTCTGTCTGCTTTACCTTGAGGCA
GAGCATAGCGTAATGTCGGAACCAATCCAAAACTTCCACTGAAAAGGCCC
AGAGGGAGGAGGAGGAGGAGGAGGTGGACATGTTGCTGTTGCTGCTACTT
TTGTTGCTATCATTTATTTTCATCCTTCTCGTTGTCTGCTTCTCA
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protein sequence of jgi.p|Nanoce1779_2|571590

>mRNA_1279-protein ID=mRNA_1279-protein|Name=jgi.p|Nanoce1779_2|571590|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MFLLLLLPFLLITVTTAPLLLLQLLQLYSSRQYLQRHTNHPQPCVFFLPF
SAVTASLPSAVEESNRLLCLLYLEAEHSVMSEPIQNFH*
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mRNA from alignment at scaffold_1:174215..174609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1279 ID=mRNA_1279|Name=jgi.p|Nanoce1779_2|571590|organism=Nannochloropsis oceanica|type=mRNA|length=395bp|location=Sequence derived from alignment at scaffold_1:174215..174609+ (Nannochloropsis oceanica)
GAATATTTAAGCCCTTTTCCAAGTTATGTTCCTCCTCCTCCTCCTCCCTT
TTCTTCTTATTACTGTTACTACAGCCCCCCTTCTGCTGCTGCAGCTGCTG
CAGCTGTACAGTAGCCGCCAGTACCTGCAACGTCACACGAACCATCCGCA
GCCTTGCGTCTTCTTTCTGCCCTTCTCTGCCGTCACTGCATCGTTGCCTA
GCGCGGTGGAGGAGAGCAATCGCCTGCTCTGTCTGCTTTACCTTGAGGCA
GAGCATAGCGTAATGTCGGAACCAATCCAAAACTTCCACTGAAAAGGCCC
AGAGGGAGGAGGAGGAGGAGGAGGTGGACATGTTGCTGTTGCTGCTACTT
TTGTTGCTATCATTTATTTTCATCCTTCTCGTTGTCTGCTTCTCA
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Coding sequence (CDS) from alignment at scaffold_1:174215..174609+

>mRNA_1279 ID=mRNA_1279|Name=jgi.p|Nanoce1779_2|571590|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_1:174215..174609+ (Nannochloropsis oceanica)
ATGTTCCTCCTCCTCCTCCTCCCTTTTCTTCTTATTACTGTTACTACAGC
CCCCCTTCTGCTGCTGCAGCTGCTGCAGCTGTACAGTAGCCGCCAGTACC
TGCAACGTCACACGAACCATCCGCAGCCTTGCGTCTTCTTTCTGCCCTTC
TCTGCCGTCACTGCATCGTTGCCTAGCGCGGTGGAGGAGAGCAATCGCCT
GCTCTGTCTGCTTTACCTTGAGGCAGAGCATAGCGTAATGTCGGAACCAA
TCCAAAACTTCCACTGA
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Synonyms
Publications