jgi.p|Nanoce1779_2|2333, mRNA_1276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|2333
Unique NamemRNA_1276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1219
Alignment locationscaffold_1:164228..165446 +

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Properties
Property NameValue
TranscriptId2419
TrackFilteredModels2
ProteinId2333
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:164228..165446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|2333gene_1276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|2333mRNA_1276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1276CDS_1276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1276 ID=mRNA_1276|Name=jgi.p|Nanoce1779_2|2333|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
TGATAATAAAATATCGCCGTTGCACGAAGGAAAACCCTTGAAGTATACCC
CCTTAGTCATTGTTTTCGTTTTTGGGCGTTGTCGTTAGTGTTGTAGCTTT
GATGCGCTTGGCAGCTAAGGCTTTCCACCATGAGTCAATGCATAGCCTGA
GCAAATCACATCCCCGTGAGAAGCTCGTCGATATTTGGAGTGCTACCCGA
AGGCTTACATCCCTTGCTCCCAACTTACCCTTACTCCCTCATCTCTTGCA
CCCAACTTACTTACGACCAGCCTCCCACACAGGTAAAATGCCCCACAATC
AAACATTACTTGCACTGCTATTGGTATTGTTGGCCTGCCTGTCGCCCGTC
AGTGGTGTCCGGACTGTGTCAGGACACGGACACACCTCCGGCATCCGTAC
TAAAACCTACCCACCGACTGCGGCACCCATGACCGTTCATTGCAACATGA
CAGACTATCGAAGCGCTTCGGGCGGGACTGAGTCCTGCACAATCTGCCGC
AACAATCACTTATGCGCTTGGTGCTTGCCAAATTCGGGAGGGCCCGGGTA
CTGTTTCAACAACGTCGAAGAAGAGTGTACCGAAGGCTCCTCCTTCAGCT
TCAGCGACAGCATTTGCAAAGAGACACCCTTTGACACCGCTCATGCCATC
ATTGCATTTTCCATTTTCTGTGCTTTGGCCGGCTGCTGCTGCTGCGGCTG
CTGCTGGTATCGAAGACGTCGTCACTTGGTGGCATTGAACGGTGCCGACA
CCACGAACTATTCTTCGCAGCTACCCACCTACCGGGGACAACAACAGAAT
TTCCCTCCACAGCAGCAATACCAAGCGCACACATACATTGTTCAACAGGC
CTCCGCGAAAAATGGCACGGCGCGTAGTCCTGTCTACTCGCCTGCCGACT
TAAATTACAACGAGAAAAAGTGGTCTGCTGGCTTAGCATAGCTGTCTGTT
TAAAACTTGTTCATGACGATAAACTACCAACCGGCTACACACGACAAAGA
AATAATATCCTTTAAGCAGACATTCACATTGGATGAATGTAATCAATGCA
GATGCGTATATTTCGCGTGTGCCCCCGGGGATGGCGCACAGAGCGCCAAT
AAATTAACGAATGTATGCGAAGGCACACCTTTACCAGGTCGGCCAATGTG
ATTGGGAAATAATCATGCAACGAGTCATCAAAGAAAGGAGCTCGTGTTGA
TAATCTTGACATTGTTTTC
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protein sequence of jgi.p|Nanoce1779_2|2333

>mRNA_1276-protein ID=mRNA_1276-protein|Name=jgi.p|Nanoce1779_2|2333|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRLAAKAFHHESMHSLSKSHPREKLVDIWSATRRLTSLAPNLPLLPHLLH
PTYLRPASHTGKMPHNQTLLALLLVLLACLSPVSGVRTVSGHGHTSGIRT
KTYPPTAAPMTVHCNMTDYRSASGGTESCTICRNNHLCAWCLPNSGGPGY
CFNNVEEECTEGSSFSFSDSICKETPFDTAHAIIAFSIFCALAGCCCCGC
CWYRRRRHLVALNGADTTNYSSQLPTYRGQQQNFPPQQQYQAHTYIVQQA
SAKNGTARSPVYSPADLNYNEKKWSAGLA*
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mRNA from alignment at scaffold_1:164228..165446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1276 ID=mRNA_1276|Name=jgi.p|Nanoce1779_2|2333|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp|location=Sequence derived from alignment at scaffold_1:164228..165446+ (Nannochloropsis oceanica)
TGATAATAAAATATCGCCGTTGCACGAAGGAAAACCCTTGAAGTATACCC
CCTTAGTCATTGTTTTCGTTTTTGGGCGTTGTCGTTAGTGTTGTAGCTTT
GATGCGCTTGGCAGCTAAGGCTTTCCACCATGAGTCAATGCATAGCCTGA
GCAAATCACATCCCCGTGAGAAGCTCGTCGATATTTGGAGTGCTACCCGA
AGGCTTACATCCCTTGCTCCCAACTTACCCTTACTCCCTCATCTCTTGCA
CCCAACTTACTTACGACCAGCCTCCCACACAGGTAAAATGCCCCACAATC
AAACATTACTTGCACTGCTATTGGTATTGTTGGCCTGCCTGTCGCCCGTC
AGTGGTGTCCGGACTGTGTCAGGACACGGACACACCTCCGGCATCCGTAC
TAAAACCTACCCACCGACTGCGGCACCCATGACCGTTCATTGCAACATGA
CAGACTATCGAAGCGCTTCGGGCGGGACTGAGTCCTGCACAATCTGCCGC
AACAATCACTTATGCGCTTGGTGCTTGCCAAATTCGGGAGGGCCCGGGTA
CTGTTTCAACAACGTCGAAGAAGAGTGTACCGAAGGCTCCTCCTTCAGCT
TCAGCGACAGCATTTGCAAAGAGACACCCTTTGACACCGCTCATGCCATC
ATTGCATTTTCCATTTTCTGTGCTTTGGCCGGCTGCTGCTGCTGCGGCTG
CTGCTGGTATCGAAGACGTCGTCACTTGGTGGCATTGAACGGTGCCGACA
CCACGAACTATTCTTCGCAGCTACCCACCTACCGGGGACAACAACAGAAT
TTCCCTCCACAGCAGCAATACCAAGCGCACACATACATTGTTCAACAGGC
CTCCGCGAAAAATGGCACGGCGCGTAGTCCTGTCTACTCGCCTGCCGACT
TAAATTACAACGAGAAAAAGTGGTCTGCTGGCTTAGCATAGCTGTCTGTT
TAAAACTTGTTCATGACGATAAACTACCAACCGGCTACACACGACAAAGA
AATAATATCCTTTAAGCAGACATTCACATTGGATGAATGTAATCAATGCA
GATGCGTATATTTCGCGTGTGCCCCCGGGGATGGCGCACAGAGCGCCAAT
AAATTAACGAATGTATGCGAAGGCACACCTTTACCAGGTCGGCCAATGTG
ATTGGGAAATAATCATGCAACGAGTCATCAAAGAAAGGAGCTCGTGTTGA
TAATCTTGACATTGTTTTC
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Coding sequence (CDS) from alignment at scaffold_1:164228..165446+

>mRNA_1276 ID=mRNA_1276|Name=jgi.p|Nanoce1779_2|2333|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_1:164228..165446+ (Nannochloropsis oceanica)
ATGCGCTTGGCAGCTAAGGCTTTCCACCATGAGTCAATGCATAGCCTGAG
CAAATCACATCCCCGTGAGAAGCTCGTCGATATTTGGAGTGCTACCCGAA
GGCTTACATCCCTTGCTCCCAACTTACCCTTACTCCCTCATCTCTTGCAC
CCAACTTACTTACGACCAGCCTCCCACACAGGTAAAATGCCCCACAATCA
AACATTACTTGCACTGCTATTGGTATTGTTGGCCTGCCTGTCGCCCGTCA
GTGGTGTCCGGACTGTGTCAGGACACGGACACACCTCCGGCATCCGTACT
AAAACCTACCCACCGACTGCGGCACCCATGACCGTTCATTGCAACATGAC
AGACTATCGAAGCGCTTCGGGCGGGACTGAGTCCTGCACAATCTGCCGCA
ACAATCACTTATGCGCTTGGTGCTTGCCAAATTCGGGAGGGCCCGGGTAC
TGTTTCAACAACGTCGAAGAAGAGTGTACCGAAGGCTCCTCCTTCAGCTT
CAGCGACAGCATTTGCAAAGAGACACCCTTTGACACCGCTCATGCCATCA
TTGCATTTTCCATTTTCTGTGCTTTGGCCGGCTGCTGCTGCTGCGGCTGC
TGCTGGTATCGAAGACGTCGTCACTTGGTGGCATTGAACGGTGCCGACAC
CACGAACTATTCTTCGCAGCTACCCACCTACCGGGGACAACAACAGAATT
TCCCTCCACAGCAGCAATACCAAGCGCACACATACATTGTTCAACAGGCC
TCCGCGAAAAATGGCACGGCGCGTAGTCCTGTCTACTCGCCTGCCGACTT
AAATTACAACGAGAAAAAGTGGTCTGCTGGCTTAGCATAG
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Synonyms
Publications