jgi.p|Nanoce1779_2|571578, mRNA_1275 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571578
Unique NamemRNA_1275
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1521
Alignment locationscaffold_1:162018..163897 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571664
TrackFilteredModels2
ProteinId571578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:162018..163897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571578gene_1275Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571578mRNA_1275-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1275CDS_1275Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1275 ID=mRNA_1275|Name=jgi.p|Nanoce1779_2|571578|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ACAGCATTGCTCCGTATCGCGGTGTCTCTTTTTCGTTTTGACCAAGCTAG
CTTAGCACACGGAAGTCCTTCCTGTCTGTGCTCGTGTTCTGCAAGCACAG
CCCTATCAGAACAATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCC
TAATTCTGTTGAGCTTAGCGTCCGCACAGGACCTGCAGGTAACGGAAACC
AGGCCCCAAACTCAACATCAGCAACAACAGGTGCGCCCCCCACGACCCAC
CGAGGAAGTCCTGAAGCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTC
GTGGTTCCAGTAGCAGCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCT
CCCAAACCCGTAACCGTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCA
ACCCCAACCAAAATCAAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGG
TCCGCTTTTCCCTGCCGAAAATGAACGGGCTGCCGGTAGATTATTGCTCG
AGGTACCAGCGAGCTGGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGG
TCTCCCTGCCGCGACCCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCA
CGGGAGATTACATCGTGACTTACTACTCGAATCGGGCTACATTCACCATG
GCCGATGAATCAATACACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAG
GCATACCTGGTTTACCAGCATTACCTGTCGATCTTCTGGACATCCCAGAG
GCGAAGTGGCTGCGGATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGG
GAGGAGGGGGGATTTCATCGTTTTTGAGGGATGAGAGGTAGATCAGAATA
GAAAAGCCATTTTATTTTGTGGCAAGGAAGCGAGAGGATGTATTGCTGTG
CATCTAAGAAATGACCGGTTGGTTATTAGATATGTGAGTGGGTTTTCACA
CACATGTGTAGATAAAAACCTTAAGTCACGTGGTCACTGCAAGGAGGGCA
GGATCATTGCTCTTGTAAGTTTTCTACAGTGCTTAGATAAAATGGAAACG
CCTTGGTAATAAGCTGTGGGGGCGTCTGCAATGGGGTTGACATTGCTCAG
TGGCACCAGTTAATACTCGCTGGGTCGCTTAGTGGATGCAACCTCAAAAC
ACAGTCGTGGGAGTCAAGTACGGTAACGAGACATGCAAAATTATGGAGTA
GAAGGCATGTGTGTGTGCGAACGTGAGTTTGTGTTTGTACATGTGTTCGT
ATGGTGTGTGTATATACGAGAGAGTAAGGTAAGGGCGAGAACAAGAGAAC
AAGGGCGGCCCTTGACCTTAGAAAATAAAAAAGAAGGCAGGAGTGAGACC
ATTTGCGCGTGAACGTGTGTGCCAGGAGGAAGTTAAAGGAGGCATAAGTA
GGAGAAAGAGGGAGAGAAGAAGAGTGATAACCTCAGGTAAAATGGCTTAG
GGATCGAGGTCAAAAGAATGAATAAGATCCAGATTGCTGAACTCGGAATT
TTGCAAAAATAAGTACTCAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|571578

>mRNA_1275-protein ID=mRNA_1275-protein|Name=jgi.p|Nanoce1779_2|571578|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSHARRTFTAAALILLSLASAQDLQVTETRPQTQHQQQQVRPPRPTEEVL
KPVGVVTAEASSRGSSSSTSVAVPIVPLPPKPVTVPAPATQQQTAQPQPK
SREGAGHEMGETVRFSLPKMNGLPVDYCSRYQRAGVRGGSRGIDCGLPAA
TRFCRSQGYDGSTGDYIVTYYSNRATFTMADESIHPADPPGDGKGRHTWF
TSITCRSSGHPRGEVAADLVLVPVAGGKGEEGGFHRF*
back to top

mRNA from alignment at scaffold_1:162018..163897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1275 ID=mRNA_1275|Name=jgi.p|Nanoce1779_2|571578|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp|location=Sequence derived from alignment at scaffold_1:162018..163897- (Nannochloropsis oceanica)
ACAGCATTGCTCCGTATCGCGGTGTCTCTTTTTCGTTTTGACCAAGCTAG
CTTAGCACACGGAAGTCCTTCCTGTCTGTGCTCGTGTTCTGCAAGCACAG
CCCTATCAGAACAATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCC
TAATTCTGTTGAGCTTAGCGTCCGCACAGGTAAGACTCAGGAATAGTTAG
TGTGAAAGAGAAGGTCAGTGAGGATGGTGGCCTCGTTCCGCGTTGCCAGA
TTCGTCGCCGGCCTGGGCCCTCGTTCTCCACAATGCCGAAGAAAGTGTGC
TGAATGGTATCACGTAATGCACTTGTGAGAAATGCGATCATGCGCCATTG
GACAGACGGGAATTGGCGTGTATCAAAATTTAGTCTCGACGGATGGCTCT
ATATAACTCCCCTCTTGCACTCGATGATCCTTGCTTCACCCGCCCAAATA
GGCAAAATCTGTCTTCACGCATGGCGCACTTGTCGCTATTCTTGAGACAC
TTACACGCAACACACAAACCATCCTCTCTATGTAACAGGACCTGCAGGTA
ACGGAAACCAGGCCCCAAACTCAACATCAGCAACAACAGGTGCGCCCCCC
ACGACCCACCGAGGAAGTCCTGAAGCCCGTAGGCGTGGTCACAGCCGAAG
CCTCTTCTCGTGGTTCCAGTAGCAGCACCTCTGTCGCTGTTCCTATTGTT
CCTCTTCCTCCCAAACCCGTAACCGTGCCAGCCCCTGCCACTCAGCAGCA
GACTGCTCAACCCCAACCAAAATCAAGAGAAGGAGCAGGTCACGAAATGG
GGGAAACGGTCCGCTTTTCCCTGCCGAAAATGAACGGGCTGCCGGTAGAT
TATTGCTCGAGGTACCAGCGAGCTGGTGTGCGAGGCGGAAGTCGCGGTAT
TGATTGCGGTCTCCCTGCCGCGACCCGATTCTGCCGCTCGCAAGGCTATG
ATGGCTCCACGGGAGATTACATCGTGACTTACTACTCGAATCGGGCTACA
TTCACCATGGCCGATGAATCAATACACCCCGCGGATCCCCCTGGTGATGG
GAAAGGGAGGCATACCTGGTTTACCAGCATTACCTGTCGATCTTCTGGAC
ATCCCAGAGGCGAAGTGGCTGCGGATTTGGTCTTGGTGCCGGTGGCAGGA
GGAAAGGGGGAGGAGGGGGGATTTCATCGTTTTTGAGGGATGAGAGGTAG
ATCAGAATAGAAAAGCCATTTTATTTTGTGGCAAGGAAGCGAGAGGATGT
ATTGCTGTGCATCTAAGAAATGACCGGTTGGTTATTAGATATGTGAGTGG
GTTTTCACACACATGTGTAGATAAAAACCTTAAGTCACGTGGTCACTGCA
AGGAGGGCAGGATCATTGCTCTTGTAAGTTTTCTACAGTGCTTAGATAAA
ATGGAAACGCCTTGGTAATAAGCTGTGGGGGCGTCTGCAATGGGGTTGAC
ATTGCTCAGTGGCACCAGTTAATACTCGCTGGGTCGCTTAGTGGATGCAA
CCTCAAAACACAGTCGTGGGAGTCAAGTACGGTAACGAGACATGCAAAAT
TATGGAGTAGAAGGCATGTGTGTGTGCGAACGTGAGTTTGTGTTTGTACA
TGTGTTCGTATGGTGTGTGTATATACGAGAGAGTAAGGTAAGGGCGAGAA
CAAGAGAACAAGGGCGGCCCTTGACCTTAGAAAATAAAAAAGAAGGCAGG
AGTGAGACCATTTGCGCGTGAACGTGTGTGCCAGGAGGAAGTTAAAGGAG
GCATAAGTAGGAGAAAGAGGGAGAGAAGAAGAGTGATAACCTCAGGTAAA
ATGGCTTAGGGATCGAGGTCAAAAGAATGAATAAGATCCAGATTGCTGAA
CTCGGAATTTTGCAAAAATAAGTACTCAAC
back to top

Coding sequence (CDS) from alignment at scaffold_1:162018..163897-

>mRNA_1275 ID=mRNA_1275|Name=jgi.p|Nanoce1779_2|571578|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_1:162018..163897- (Nannochloropsis oceanica)
GACCTGCAGGTAACGGAAACCAGGCCCCAAACTCAACATCAGCAACAACA
GGTGCGCCCCCCACGACCCACCGAGGAAGTCCTGAAGCCCGTAGGCGTGG
TCACAGCCGAAGCCTCTTCTCGTGGTTCCAGTAGCAGCACCTCTGTCGCT
GTTCCTATTGTTCCTCTTCCTCCCAAACCCGTAACCGTGCCAGCCCCTGC
CACTCAGCAGCAGACTGCTCAACCCCAACCAAAATCAAGAGAAGGAGCAG
GTCACGAAATGGGGGAAACGGTCCGCTTTTCCCTGCCGAAAATGAACGGG
CTGCCGGTAGATTATTGCTCGAGGTACCAGCGAGCTGGTGTGCGAGGCGG
AAGTCGCGGTATTGATTGCGGTCTCCCTGCCGCGACCCGATTCTGCCGCT
CGCAAGGCTATGATGGCTCCACGGGAGATTACATCGTGACTTACTACTCG
AATCGGGCTACATTCACCATGGCCGATGAATCAATACACCCCGCGGATCC
CCCTGGTGATGGGAAAGGGAGGCATACCTGGTTTACCAGCATTACCTGTC
GATCTTCTGGACATCCCAGAGGCGAAGTGGCTGCGGATTTGGTCTTGGTG
CCGGTGGCAGGAGGAAAGGGGGAGGAGGGGGGATTTCATCGTTTTTGAAT
GAGCCACGCACGACGCACCTTCACCGCCGCCGCCCTAATTCTGTTGAGCT
TAGCGTCCGCACAGGACCTGCAGGTAACGGAAACCAGGCCCCAAACTCAA
CATCAGCAACAACAGGTGCGCCCCCCACGACCCACCGAGGAAGTCCTGAA
GCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTCGTGGTTCCAGTAGCA
GCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCTCCCAAACCCGTAACC
GTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCAACCCCAACCAAAATC
AAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGGTCCGCTTTTCCCTGC
CGAAAATGAACGGGCTGCCGGTAGATTATTGCTCGAGGTACCAGCGAGCT
GGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGGTCTCCCTGCCGCGAC
CCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCACGGGAGATTACATCG
TGACTTACTACTCGAATCGGGCTACATTCACCATGGCCGATGAATCAATA
CACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAGGCATACCTGGTTTAC
CAGCATTACCTGTCGATCTTCTGGACATCCCAGAGGCGAAGTGGCTGCGG
ATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGGGAGGAGGGGGGATTT
CATCGTTTTTGAATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCCT
AATTCTGTTGAGCTTAGCGTCCGCACAG
back to top
Synonyms
Publications