jgi.p|Nanoce1779_2|571576, mRNA_1274 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571576
Unique Name	mRNA_1274
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1659
Alignment location	scaffold_1:160389..162047 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571662
Track	FilteredModels2
ProteinId	571576

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:160389..162047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571576	gene_1274	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571576	mRNA_1274-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1274	CDS_1274	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:160389..162047+
coding sequence from alignment at scaffold_1:160389..162047+

mRNA sequence

>mRNA_1274 ID=mRNA_1274|Name=jgi.p|Nanoce1779_2|571576|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ACAGTGTCGCATCCTTCCCCCTTACTCCTCTGCTGACGATTCATGTCCGT
CTCCCGCCATCGCTATCTCATCATCCTCGTCGTCCTAGCCCTCTTCGTCG
GCCTCCTCCCATCTACAGGTATGTCTACAGTCTAGCAGTTGCCGTTCTAT
GTCTCCACATTGTGTCGGCAAGGAGCATCGACTTTTCTATCCATCCACAC
ACAGCCGCGACCTCGTCCTCTTCTCCTTCCTCCCCTTCCTCCTCACTCCG
CGGTCTGTCTGTTCCTGCCTCCTTTGTCCAAGGAGACAACAAGATGTCGG
CCCATGAAGATCTTGAGGCGGCGGCCAAGGACAGCCTCCTTCCCGTCATG
ACAATCCAGGCCATGCATCACCGCACCCGAGCAATCCCTTCTCCTGCGTT
GCACAACGATCAACAACCAGAAGAAGACATGGCATTGGATGTCAGTCTCC
TGAGTCCATCCTCGCCCTCAGACCCGATCACCGCCGTCACCACCAGGAAC
AGAATCAAGCTCCGACAGGCCCGCGGGGGCGGTGCCGTTCCCCTCACCAA
AGGACGTCGTGGCATCAGAGATGGCAAAGGTACCATGATCGGGACCCCTT
TGAGAGGCACGCTGATTACTCTCGGGTATTTTGCTTTGTGGTTCGCACTG
AATGTCTACTACAACATCGTCAACAAGCAAGTTCTCAATGCCTTTCCCCT
CCCCTTCACCGTCGCCACCGCGCAGCTCGGCATTGGCGCTATCTACGTAA
GCCTTTCTTGGCTTCTCCGACTACGAGCTGCCCCCCAGACAGGCAAAGAT
GGTCTGAAAGACCTCCTTCCCATCGCCCTCTTCCACGGTTCCGGACAACT
TTTTACCGTCTTGAGCCTCGGGGCTGCAGCTGTTAGTTTTACTCATATTG
TCAAGGCCCTCGAGCCCTTTTTCTCCGCCCTTGTGGCCGCCCTTTGCTTT
AAGCAGATTTTCAAACCCCAAGTCTACCTCAGTCTCGTGCCCGTCGTGTT
AGGGGTGGCGGTTGCATGCGCCAACGATGTCTCCTTCGGGTGGCTTGCCT
TCCTCACTGCCATGGCCTCCAACCTAGCCTTTGCCCTTCGTGCCAACTTT
TCCAAGTCTACCCTTGCAGTCTTCAAAAGAGAAGGGAACGACAGCATGTC
CCCTGCCAACGTCTACGGTGTCATCACCATCCTCGCCTTCGTTCTCCTTC
TCCCCCTCACCCTCCTATGGGAAGGGGTCGACCTGCAGCCGTCCTGGCGC
GTGGCCACTGAAAAACTGGAAACTTCGACCCTCACATATCAATTGTTGTT
GAGCGGCTTGTTCCACTATTTGAATAACGAGGTGATGTACTTAGCATTAG
ACAGTGTGCATCCCATCACCCTGGCAGTGGGGAACACGGCGAAAAGGGTC
TTCATTATTGTGGCGAGTCTGATTGCTTTTAGGAATCCGATTTCGATGAC
GGGGGCGGTGGGTTCGGCGGTAGGGATTGCAGGGGTGCTGGTTTACACCC
TCACAAAGCAGTATTACGATACGCATGTCTAGAGATGGAAGAAAGTGGGT
CGGGTTTGAAAGAGAAATGTAAGCGAAAGGAGCAGTAATAGGAAGGGCAC
ACTCACATGTTCCAATTATGTTTGTATATGTTGAGTACTTATTTTTGCAA
AATTCCGAG

protein sequence of jgi.p|Nanoce1779_2|571576

>mRNA_1274-protein ID=mRNA_1274-protein|Name=jgi.p|Nanoce1779_2|571576|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MSAHEDLEAAAKDSLLPVMTIQAMHHRTRAIPSPALHNDQQPEEDMALDV
SLLSPSSPSDPITAVTTRNRIKLRQARGGGAVPLTKGRRGIRDGKGTMIG
TPLRGTLITLGYFALWFALNVYYNIVNKQVLNAFPLPFTVATAQLGIGAI
YVSLSWLLRLRAAPQTGKDGLKDLLPIALFHGSGQLFTVLSLGAAAVSFT
HIVKALEPFFSALVAALCFKQIFKPQVYLSLVPVVLGVAVACANDVSFGW
LAFLTAMASNLAFALRANFSKSTLAVFKREGNDSMSPANVYGVITILAFV
LLLPLTLLWEGVDLQPSWRVATEKLETSTLTYQLLLSGLFHYLNNEVMYL
ALDSVHPITLAVGNTAKRVFIIVASLIAFRNPISMTGAVGSAVGIAGVLV
YTLTKQYYDTHV*

mRNA from alignment at scaffold_1:160389..162047+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1274 ID=mRNA_1274|Name=jgi.p|Nanoce1779_2|571576|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_1:160389..162047+ (Nannochloropsis oceanica)
ACAGTGTCGCATCCTTCCCCCTTACTCCTCTGCTGACGATTCATGTCCGT
CTCCCGCCATCGCTATCTCATCATCCTCGTCGTCCTAGCCCTCTTCGTCG
GCCTCCTCCCATCTACAGGTATGTCTACAGTCTAGCAGTTGCCGTTCTAT
GTCTCCACATTGTGTCGGCAAGGAGCATCGACTTTTCTATCCATCCACAC
ACAGCCGCGACCTCGTCCTCTTCTCCTTCCTCCCCTTCCTCCTCACTCCG
CGGTCTGTCTGTTCCTGCCTCCTTTGTCCAAGGAGACAACAAGATGTCGG
CCCATGAAGATCTTGAGGCGGCGGCCAAGGACAGCCTCCTTCCCGTCATG
ACAATCCAGGCCATGCATCACCGCACCCGAGCAATCCCTTCTCCTGCGTT
GCACAACGATCAACAACCAGAAGAAGACATGGCATTGGATGTCAGTCTCC
TGAGTCCATCCTCGCCCTCAGACCCGATCACCGCCGTCACCACCAGGAAC
AGAATCAAGCTCCGACAGGCCCGCGGGGGCGGTGCCGTTCCCCTCACCAA
AGGACGTCGTGGCATCAGAGATGGCAAAGGTACCATGATCGGGACCCCTT
TGAGAGGCACGCTGATTACTCTCGGGTATTTTGCTTTGTGGTTCGCACTG
AATGTCTACTACAACATCGTCAACAAGCAAGTTCTCAATGCCTTTCCCCT
CCCCTTCACCGTCGCCACCGCGCAGCTCGGCATTGGCGCTATCTACGTAA
GCCTTTCTTGGCTTCTCCGACTACGAGCTGCCCCCCAGACAGGCAAAGAT
GGTCTGAAAGACCTCCTTCCCATCGCCCTCTTCCACGGTTCCGGACAACT
TTTTACCGTCTTGAGCCTCGGGGCTGCAGCTGTTAGTTTTACTCATATTG
TCAAGGCCCTCGAGCCCTTTTTCTCCGCCCTTGTGGCCGCCCTTTGCTTT
AAGCAGATTTTCAAACCCCAAGTCTACCTCAGTCTCGTGCCCGTCGTGTT
AGGGGTGGCGGTTGCATGCGCCAACGATGTCTCCTTCGGGTGGCTTGCCT
TCCTCACTGCCATGGCCTCCAACCTAGCCTTTGCCCTTCGTGCCAACTTT
TCCAAGTCTACCCTTGCAGTCTTCAAAAGAGAAGGGAACGACAGCATGTC
CCCTGCCAACGTCTACGGTGTCATCACCATCCTCGCCTTCGTTCTCCTTC
TCCCCCTCACCCTCCTATGGGAAGGGGTCGACCTGCAGCCGTCCTGGCGC
GTGGCCACTGAAAAACTGGAAACTTCGACCCTCACATATCAATTGTTGTT
GAGCGGCTTGTTCCACTATTTGAATAACGAGGTGATGTACTTAGCATTAG
ACAGTGTGCATCCCATCACCCTGGCAGTGGGGAACACGGCGAAAAGGGTC
TTCATTATTGTGGCGAGTCTGATTGCTTTTAGGAATCCGATTTCGATGAC
GGGGGCGGTGGGTTCGGCGGTAGGGATTGCAGGGGTGCTGGTTTACACCC
TCACAAAGCAGTATTACGATACGCATGTCTAGAGATGGAAGAAAGTGGGT
CGGGTTTGAAAGAGAAATGTAAGCGAAAGGAGCAGTAATAGGAAGGGCAC
ACTCACATGTTCCAATTATGTTTGTATATGTTGAGTACTTATTTTTGCAA
AATTCCGAG

Coding sequence (CDS) from alignment at scaffold_1:160389..162047+

>mRNA_1274 ID=mRNA_1274|Name=jgi.p|Nanoce1779_2|571576|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_1:160389..162047+ (Nannochloropsis oceanica)
ATGTCGGCCCATGAAGATCTTGAGGCGGCGGCCAAGGACAGCCTCCTTCC
CGTCATGACAATCCAGGCCATGCATCACCGCACCCGAGCAATCCCTTCTC
CTGCGTTGCACAACGATCAACAACCAGAAGAAGACATGGCATTGGATGTC
AGTCTCCTGAGTCCATCCTCGCCCTCAGACCCGATCACCGCCGTCACCAC
CAGGAACAGAATCAAGCTCCGACAGGCCCGCGGGGGCGGTGCCGTTCCCC
TCACCAAAGGACGTCGTGGCATCAGAGATGGCAAAGGTACCATGATCGGG
ACCCCTTTGAGAGGCACGCTGATTACTCTCGGGTATTTTGCTTTGTGGTT
CGCACTGAATGTCTACTACAACATCGTCAACAAGCAAGTTCTCAATGCCT
TTCCCCTCCCCTTCACCGTCGCCACCGCGCAGCTCGGCATTGGCGCTATC
TACGTAAGCCTTTCTTGGCTTCTCCGACTACGAGCTGCCCCCCAGACAGG
CAAAGATGGTCTGAAAGACCTCCTTCCCATCGCCCTCTTCCACGGTTCCG
GACAACTTTTTACCGTCTTGAGCCTCGGGGCTGCAGCTGTTAGTTTTACT
CATATTGTCAAGGCCCTCGAGCCCTTTTTCTCCGCCCTTGTGGCCGCCCT
TTGCTTTAAGCAGATTTTCAAACCCCAAGTCTACCTCAGTCTCGTGCCCG
TCGTGTTAGGGGTGGCGGTTGCATGCGCCAACGATGTCTCCTTCGGGTGG
CTTGCCTTCCTCACTGCCATGGCCTCCAACCTAGCCTTTGCCCTTCGTGC
CAACTTTTCCAAGTCTACCCTTGCAGTCTTCAAAAGAGAAGGGAACGACA
GCATGTCCCCTGCCAACGTCTACGGTGTCATCACCATCCTCGCCTTCGTT
CTCCTTCTCCCCCTCACCCTCCTATGGGAAGGGGTCGACCTGCAGCCGTC
CTGGCGCGTGGCCACTGAAAAACTGGAAACTTCGACCCTCACATATCAAT
TGTTGTTGAGCGGCTTGTTCCACTATTTGAATAACGAGGTGATGTACTTA
GCATTAGACAGTGTGCATCCCATCACCCTGGCAGTGGGGAACACGGCGAA
AAGGGTCTTCATTATTGTGGCGAGTCTGATTGCTTTTAGGAATCCGATTT
CGATGACGGGGGCGGTGGGTTCGGCGGTAGGGATTGCAGGGGTGCTGGTT
TACACCCTCACAAAGCAGTATTACGATACGCATGTCTAG

Synonyms

Publications