jgi.p|Nanoce1779_2|571574, mRNA_1273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571574
Unique NamemRNA_1273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1557
Alignment locationscaffold_1:158713..160466 -

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Properties
Property NameValue
TranscriptId571660
TrackFilteredModels2
ProteinId571574
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:158713..160466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571574gene_1273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571574mRNA_1273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1273CDS_1273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Nanoce1779_2|571574|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
GAGGATGATGAGATAGCGATGGCGGGAGACGGACATGAATCGTCAGCAGA
GGAGTAAGGGGGAAGGATGCGACACTGTGCTTGTGTTTTGAAATAAGGTA
GCGTCGTTAAACCCGGAAAGAAGAATGTTCAACGTCCTGTATTACGCCCT
TGGAAGACCTTTGCCAAGGTGCTTGACAGTAGGATACAAAGCTCCCGCAG
TCGTTGAAATAGCTTGTCAGCTGTGCTGGGCAGGTCACAGTGGACTAAAA
TTTGCTGTGTGATTTGCATTGTTTGTCACATCCACGATAACTAACCTCCC
CACCCCATTCGTTCGCATGTCAACATATCACCTTCAGACACACCATGCTG
TCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCGAGCTAG
ACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCCGCTACA
TGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGCAAACCC
CACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCCACGCAA
TCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCATCACCT
TGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGCGAGAGC
TTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAAAGTCCG
GGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGACGAGACT
TGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGGTACATG
AAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGCCCCTCCCCAC
CATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAACTCGCCC
TCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGTCTCCCC
GAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACTTCTACG
TGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCGCTCGGC
GTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGCGTTTCA
ACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGCGAGGAA
CGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAGCACATA
ACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGGGCACCT
TTATCGGAAACGGATGATTTCAAGGAGGCGTTACAGGCGTTTGAGGAAAA
ACGAAAGCCAGTGTTCAAGGGGCGATAGGAAAGAGAGCGGGAAGGAGGGA
GCAAAAGAGGAGTGGAGGGAAGGAGGGGAGTAAATAAGAATGTGGTCCAG
CCGTGGGCACCGTTATCGGAAACGGATGCTTTCAAGGACGCGTTGCAACC
ACTTCAAAAGATTCGAGAGCCGTTTTGGAAGGTGATGCGAAGGATAGAGA
TAGGAAAGGAGGACAGGGTAATGTTCATAGAAACAACAAAAACGAGAGAA
CGTGGTG
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protein sequence of jgi.p|Nanoce1779_2|571574

>mRNA_1273-protein ID=mRNA_1273-protein|Name=jgi.p|Nanoce1779_2|571574|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MLSTVVTTATATALLCRARPTMCASFYFLRCRPRYMTMLSTSSTGGANTS
KPHGPGHQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMG
ESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRER
YMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLC
LPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNS
VSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLR
APLSETDDFKEALQAFEEKRKPVFKGR*
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mRNA from alignment at scaffold_1:158713..160466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Nanoce1779_2|571574|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at scaffold_1:158713..160466- (Nannochloropsis oceanica)
GAGGATGATGAGATAGCGATGGCGGGAGACGGACATGAATCGTCAGCAGA
GGAGTAAGGGGGAAGGATGCGACACTGTGCTTGTGTTTTGAAATAAGGTA
GCGTCGTTAAACCCGGAAAGAAGAATGTTCAACGTCCTGTATTACGCCCT
TGGAAGACCTTTGCCAAGGTGCTTGACAGTAGGATACAAAGCTCCCGCAG
TCGTTGAAATAGCTTGTCAGCTGTGCTGGGCAGGTCACAGTGGACTAAAA
TTTGCTGTGTGATTTGCATTGTTTGTCACATCCACGATAACTAACCTCCC
CACCCCATTCGTTCGCATGTCAACATATCACCTTCAGACACACCATGCTG
TCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCGAGCTAG
ACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCCGCTACA
TGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGCAAACCC
CACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCCACGCAA
TCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCATCACCT
TGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGCGAGAGC
TTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAAAGTCCG
GGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGACGAGACT
TGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGGTACATG
AAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGGTAAGGAAACG
AAAGACGGGGCCCGGCTTATGGGTGTTTATGTCCTCCCTTTCCCAGATTA
ACCATCGATCCTCTTTTCATCCCTCCTCTGTGATGTTCTAGCAAAGCGAA
ACCTTGTAGTCCCAATCCCTCACTGCAATTTATAACATCACCCAACTTTT
CCCTCTCTCAATCTCGCCGTCTCTCCTTCGAAATAGCCCCTCCCCACCAT
CGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAACTCGCCCTCG
CGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGTCTCCCCGAA
ACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACTTCTACGTGA
GCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCGCTCGGCGTT
TTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGCGTTTCAACC
GCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGCGAGGAACGG
TCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAGCACATAACG
TGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGGGCACCTTTA
TCGGAAACGGATGATTTCAAGGAGGCGTTACAGGCGTTTGAGGAAAAACG
AAAGCCAGTGTTCAAGGGGCGATAGGAAAGAGAGCGGGAAGGAGGGAGCA
AAAGAGGAGTGGAGGGAAGGAGGGGAGTAAATAAGAATGTGGTCCAGCCG
TGGGCACCGTTATCGGAAACGGATGCTTTCAAGGACGCGTTGCAACCACT
TCAAAAGATTCGAGAGCCGTTTTGGAAGGTGATGCGAAGGATAGAGATAG
GAAAGGAGGACAGGGTAATGTTCATAGAAACAACAAAAACGAGAGAACGT
GGTG
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Coding sequence (CDS) from alignment at scaffold_1:158713..160466-

>mRNA_1273 ID=mRNA_1273|Name=jgi.p|Nanoce1779_2|571574|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_1:158713..160466- (Nannochloropsis oceanica)
CCCCTCCCCACCATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCT
CGAACTCGCCCTCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCC
TCTGTCTCCCCGAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTG
GTACTTCTACGTGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTT
CACCGCTCGGCGTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCA
ACAGCGTTTCAACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACT
ATCGCGAGGAACGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGA
GGGAGCACATAACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGC
TACGGGCACCTTTATCGGAAACGGATGATTTCAAGGAGGCGTTACAGGCG
TTTGAGGAAAAACGAAAGCCAGTGTTCAAGGGGCGATAGATGCTGTCCAC
CGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCGAGCTAGACCTA
CGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCCGCTACATGACC
ATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGCAAACCCCACGG
TCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCCACGCAATCTAA
AGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCATCACCTTGGAT
CGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGCGAGAGCTTGAT
GCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAAAGTCCGGGCGT
GTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGACGAGACTTGAAA
GCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGGTACATGAAATT
GGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGCCCCTCCCCACCATCG
CCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAACTCGCCCTCGCG
TGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGTCTCCCCGAAAC
CTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACTTCTACGTGAGC
TCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCGCTCGGCGTTTT
TCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGCGTTTCAACCGC
GGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGCGAGGAACGGTC
CTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAGCACATAACGTG
AGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGGGCACCTTTATC
GGAAACGGATGATTTCAAGGAGGCGTTACAGGCGTTTGAGGAAAAACGAA
AGCCAGTGTTCAAGGGGCGATAGATGCTGTCCACCGTCGTAACCACAGCC
ACTGCCACTGCCCTCCTATGTCGAGCTAGACCTACGATGTGCGCCTCTTT
TTATTTTTTGCGGTGCCGCCCCCGCTACATGACCATGCTTAGCACCAGCT
CGACGGGGGGGGCAAATACAAGCAAACCCCACGGTCCTGGCCACCAAAGG
GGGGAGTTGTTGGAAGAGCCGCCACGCAATCTAAAGGACATTGAATTTTC
CCTCAAAGACGGCGTTGCCACCATCACCTTGGATCGACCCCACCGTTTGA
ACGCTCTGAGCGAAGAGATGGGCGAGAGCTTGATGCGCCTGTGCGAGTAC
CTGACAGAGGCCCCGGCTGACAAAGTCCGGGCGTGTATTGTTACTGGAGG
GTCTCGCGCCTTCTCCACGGGACGAGACTTGAAAGCTTCAAAGTTACACA
CGACCTTAGCGCAACGGGAGCGGTACATGAAATTGGCTTTGGACTCGGTT
TTGGCGGTGCAGAGGCTG
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Synonyms
Publications