jgi.p|Nanoce1779_2|571571, mRNA_1272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571571
Unique NamemRNA_1272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length627
Alignment locationscaffold_1:157523..158683 +

Link to JBrowse

Properties
Property NameValue
TranscriptId571657
TrackFilteredModels2
ProteinId571571
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:157523..158683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571571gene_1272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571571mRNA_1272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1272CDS_1272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1272 ID=mRNA_1272|Name=jgi.p|Nanoce1779_2|571571|organism=Nannochloropsis oceanica|type=mRNA|length=627bp
ACAGTTTTGGCAAGCCACTGAATGGGAAATTTGCTTGGAGGACCCCCTGC
CGTCGCAACCGTTGCAGCCATGGATTTCGTCAAGAAAACTCTCCAAGCCC
ACAAAGTGGTCGTCTTTTCGAAAACCTACTGCCCCTTTGCCTCCAGGGCC
AAGCAAACCCTGCAATCAGAAGGCGCCGTCTTCCACGTCGTAGAGCTGGA
CCAACGTAACGATGGAGGGGAGATTCAGGCGGCCCTTGCGGACATGACCG
GCCGGCGAACGGTCCCAAACGTATTCTTGGACAGCAAGAGTATCGGAGGG
GGGGATGACACGGTGGCTTTGGCGCGGTCTGGGAGGTTAAGGGAAATGCT
CTTGGCGTTGGGGGCGCTGAAGTAAGATCGATGCGGCGAAGCTATAGCAA
GGGAGGAATACAAAATCATCAAGAAAACATTCAAAGTATGGGAGAGAGGG
GGGGGGAGGGAGAGGAAGACCAAGGGGAAAAAGCTGAAAGAAACCTTTAA
AAGAATTTCCTGATCGGGAAGTCTAAGGTATACCGTGGATTGGAAAACGC
GTAGTTAACACAATACCAAACTCAAAACGGCGGAGAAACAGCAGCATAAG
TAATAAAAGTCCTTGCCCAAACGCGTA
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protein sequence of jgi.p|Nanoce1779_2|571571

>mRNA_1272-protein ID=mRNA_1272-protein|Name=jgi.p|Nanoce1779_2|571571|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSE
GAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVAL
ARSGRLREMLLALGALK*
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mRNA from alignment at scaffold_1:157523..158683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1272 ID=mRNA_1272|Name=jgi.p|Nanoce1779_2|571571|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at scaffold_1:157523..158683+ (Nannochloropsis oceanica)
ACAGTTTTGGCAAGCCACTGAATGGGAAATTTGCTTGGAGGACCCCCTGC
CGTCGCAACCGTTGCAGCCATGGATTTCGTCAAGAAAACTCTCCAAGGTG
CGTGTCCTCATGATGGTGACCAGGGGGGAGGGAGAAGAAGGGTGGGGGCG
AGAAAGGAAAGATCGATGGGACACCATTATAGACTCGCATCGAAGATGGG
CGCTGTCGCTGCACGACATATGCCTAAAGTGATACCGCTGCCGGGTCGAC
CAGGACGCTTACGACAAGCGGGATTGGTGGATGAAATAAGTGGAGGGTCT
GCCCGGATCATACACCACGTCGCCCCTCCCTGTCTCATGCGTACATGCGC
CGTAAGGCTGGGCCTACACTCCAGTTCATTTAAAATTGACAGATGCAACG
TTGCGAATGCAAGCGAGTTATCGGTCGCCGTGAATGCTCGCCCACCTTTT
TTTCCTCCCAACCTCGTCCCTACCAAACAGCCCACAAAGTGGTCGTCTTT
TCGAAAACCTACTGCCCCTTTGCCTCCAGGGCCAAGCAAACCCTGCAATC
AGAAGGCGCCGTCTTCCACGTCGTAGAGCTGGACCAACGTAACGATGGAG
GGGAGATTCAGGCGGCCCTTGCGGACATGACCGGCCGGCGAACGGTCCCA
AACGTATTCTTGGACAGCAAGAGTATCGGAGGGGGGGATGACACGGTGGC
TTTGGCGCGGTCTGGGAGGTTAAGGGAAATGCTCTTGGCGTTGGGGGCGC
TGAAGTAAGTAAGTGAGAGGTACGTGGTGAGGCTTTCCTTGCTTTCGCGA
GGGGTTGGGGTGCAGGTGTCAGCGGGCATGCCAGGGGGTGTGAACATGCC
GCAGACATTTCCTCTTGACTGTGAAAATACCCCGGTTTCTTTCCCTCGTT
CATCCACAGGATCGATGCGGCGAAGCTATAGCAAGGGAGGAATACAAAAT
CATCAAGAAAACATTCAAAGTATGGGAGAGAGGGGGGGGGAGGGAGAGGA
AGACCAAGGGGAAAAAGCTGAAAGAAACCTTTAAAAGAATTTCCTGATCG
GGAAGTCTAAGGTATACCGTGGATTGGAAAACGCGTAGTTAACACAATAC
CAAACTCAAAACGGCGGAGAAACAGCAGCATAAGTAATAAAAGTCCTTGC
CCAAACGCGTA
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Coding sequence (CDS) from alignment at scaffold_1:157523..158683+

>mRNA_1272 ID=mRNA_1272|Name=jgi.p|Nanoce1779_2|571571|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_1:157523..158683+ (Nannochloropsis oceanica)
ATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAGCCAT
GGATTTCGTCAAGAAAACTCTCCAAGCCCACAAAGTGGTCGTCTTTTCGA
AAACCTACTGCCCCTTTGCCTCCAGGGCCAAGCAAACCCTGCAATCAGAA
GGCGCCGTCTTCCACGTCGTAGAGCTGGACCAACGTAACGATGGAGGGGA
GATTCAGGCGGCCCTTGCGGACATGACCGGCCGGCGAACGGTCCCAAACG
TATTCTTGGACAGCAAGAGTATCGGAGGGGGGGATGACACGGTGGCTTTG
GCGCGGTCTGGGAGGTTAAGGGAAATGCTCTTGGCGTTGGGGGCGCTGAA
GTAAATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAG
CCATGGATTTCGTCAAGAAAACTCTCCAAGCCCACAAAGTGGTCGTCTTT
TCGAAAACCTACTGCCCCTTTGCCTCCAGGGCCAAGCAAACCCTGCAATC
AGAAGGCGCCGTCTTCCACGTCGTAGAGCTGGACCAACGTAACGATGGAG
GGGAGATTCAGGCGGCCCTTGCGGACATGACCGGCCGGCGAACGGTCCCA
AACGTATTCTTGGACAGCAAGAGTATCGGAGGGGGGGATGACACGGTGGC
TTTGGCGCGGTCTGGGAGGTTAAGGGAAATGCTCTTGGCGTTGGGGGCGC
TGAAGTAA
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Synonyms
Publications