jgi.p|Nanoce1779_2|571561, mRNA_1271 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571561
Unique NamemRNA_1271
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1037
Alignment locationscaffold_1:155963..157347 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571647
TrackFilteredModels2
ProteinId571561
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:155963..157347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571561gene_1271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571561mRNA_1271-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1271CDS_1271Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1271 ID=mRNA_1271|Name=jgi.p|Nanoce1779_2|571561|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp
AGTACAACATAAGAAAGGACGTGCTTGCCAGCACTGGAAAGGACCAGCTC
GGCGCTATGGCGGATTACGTCGTTCACCGGGACGGGAACAACAAGGACAA
ATATTTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCCTCCTTG
ACCGGCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTGGACCTA
GCTGAAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTGCCTCGT
GCTCACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAACAGACG
ATTCATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCAGCGGCA
ATTTTCATGAAGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGT
CAATGGCCCCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACC
TTGCTTACGCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATG
GCTATCGTACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGG
GAGGAGCAAAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCAC
GCGAGGCGGAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGA
CTCATGCCAGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTT
GGTACAGAAAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGT
TGAAGGAGGTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGAT
AGGATCGCAGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAG
TCGACTGTAACATAAAATGTGGAATTTGGGTATGAGATTAAGATTAAGAT
TAGGATTAGGATTCAGATTAAGATCGAGATTAAGATTGAGATTAAGATTG
TGCCCAGGCCATCCCTCCCTCCAGCCAAGGTGAATAAAGTAAGGCGTATC
GACATGTTGAAAAAAAGTAGTGACCATACTTGAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|571561

>mRNA_1271-protein ID=mRNA_1271-protein|Name=jgi.p|Nanoce1779_2|571561|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MADYVVHRDGNNKDKYFHEERPFPGILILLLDRHRKKNAITGAMYLDLAE
AMNRAAVDETVTCLVLTGKGDYFSSGADLTDDSWSPDSDHKMEASPAAIF
MKALSAFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAI
VPEYASSALFPLTMGRSKASELLFLGKKFTAREAESAHLISEVIASERLM
PEVLSRLEEMLAKPLVQKSIVAFKKLMKSQRLKEVDDVIKAEFRAFDDRI
AEGDVAFAIGQLLQSRL*
back to top

mRNA from alignment at scaffold_1:155963..157347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1271 ID=mRNA_1271|Name=jgi.p|Nanoce1779_2|571561|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_1:155963..157347- (Nannochloropsis oceanica)
AGTACAACATAAGAAAGGACGTGCTTGCCAGCACTGGAAAGGACCAGCTC
GGCGCTATGGCGGATTACGTCGTTCACCGGGACGGGAACAACAAGGGTAA
GAATGCTCTTCTTTCCTATCCTTCCACCCCTTTCCCTGTCCTTCACTCCT
CTCCCTGATGTGCTACATCCGCTGTAAGCGTAAACCTGTAATGCCTGCGC
ATCTTGCCCTTCCAAATTTATGGACGTTCGTAAGGGGTCTTTGCATTCCC
CAAAGAGTGCATGCCACGACAGATCGCACTATTCTCCTTCCATTCCCAAC
CCATAACCGCCAGCTCCACTCAACCATCCACCCACATACCTAGACAAATA
TTTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCCTCCTTGACC
GGCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTGGACCTAGCT
GAAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTGCCTCGTGCT
CACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAACAGACGATT
CATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCAGCGGCAATT
TTCATGAAGGTACGTGTGTGATCTTGTCTCCGTCAAATGAATCCCGCTGC
TCCTCACTCCTCACCCCTCCTCCCTTTTTCTAATCGCCCTCCCTTCCTCC
ATATCTTCAGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCA
ATGGCCCCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTT
GCTTACGCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGC
TATCGTACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGA
GGAGCAAAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGC
GAGGCGGAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACT
CATGCCAGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGG
TACAGAAAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTG
AAGGAGGTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAG
GATCGCAGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTC
GACTGTAACATAAAATGTGGAATTTGGGTATGAGATTAAGATTAAGATTA
GGATTAGGATTCAGATTAAGATCGAGATTAAGATTGAGATTAAGATTGTG
CCCAGGCCATCCCTCCCTCCAGCCAAGGTGAATAAAGTAAGGCGTATCGA
CATGTTGAAAAAAAGTAGTGACCATACTTGAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_1:155963..157347-

>mRNA_1271 ID=mRNA_1271|Name=jgi.p|Nanoce1779_2|571561|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_1:155963..157347- (Nannochloropsis oceanica)
GCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCAATGGCCCCGC
CATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTTGCTTACGCTG
CCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGCTATCGTACCT
GAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGAGGAGCAAAGC
AAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGCGAGGCGGAGA
GCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACTCATGCCAGAG
GTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGGTACAGAAAAG
CATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTGAAGGAGGTAG
ATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAGGATCGCAGAG
GGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTCGACTGTAAAC
AAATATTTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCCTCCT
TGACCGGCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTGGACC
TAGCTGAAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTGCCTC
GTGCTCACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAACAGA
CGATTCATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCAGCGG
CAATTTTCATGAAGATGGCGGATTACGTCGTTCACCGGGACGGGAACAAC
AAGGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCAATGGCC
CCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTTGCTTAC
GCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGCTATCGT
ACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGAGGAGCA
AAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGCGAGGCG
GAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACTCATGCC
AGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGGTACAGA
AAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTGAAGGAG
GTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAGGATCGC
AGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTCGACTGT
AAACAAATATTTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCC
TCCTTGACCGGCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTG
GACCTAGCTGAAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTG
CCTCGTGCTCACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAA
CAGACGATTCATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCA
GCGGCAATTTTCATGAAGATGGCGGATTACGTCGTTCACCGGGACGGGAA
CAACAAGGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCAAT
GGCCCCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTTGC
TTACGCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGCTA
TCGTACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGAGG
AGCAAAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGCGA
GGCGGAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACTCA
TGCCAGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGGTA
CAGAAAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTGAA
GGAGGTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAGGA
TCGCAGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTCGA
CTGTAAACAAATATTTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATC
CTCCTCCTTGACCGGCACCGGAAAAAGAACGCCATCACTGGTGCCATGTA
CTTGGACCTAGCTGAAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCA
CTTGCCTCGTGCTCACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGAT
CTAACAGACGATTCATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTC
ACCAGCGGCAATTTTCATGAAGATGGCGGATTACGTCGTTCACCGGGACG
GGAACAACAAGG
back to top
Synonyms
Publications