jgi.p|Nanoce1779_2|571555, mRNA_1269 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571555
Unique NamemRNA_1269
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length783
Alignment locationscaffold_1:151545..153117 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571641
TrackFilteredModels2
ProteinId571555
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:151545..153117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571555gene_1269Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571555mRNA_1269-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1269CDS_1269Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Nanoce1779_2|571555|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
GTCTGGTTGAAGAAGAAGGACAATGTGTGGACAATCCAATTCTGTCCGAT
GTTGCGTTGGCGGGTGAAATTTAAAAGCTGGGATCGAACTTTACTTTTTG
ATAAGGTGGAAACCCCCGCGGACGAAGAGCCCGTGATGCGTGAGTTTCGA
ATGAAGGTACCCTTCCCCGATGGGCCGTCCGTGACGGGCATCCTTGACAG
GGTCGACGCCGACAAGGAGAGTGGGGAGTGGATTGTGGTTGATTACAAAA
CAGGCAAGGCTCCGGCACTCAAGTACTCTCCCGCCGTGAATGAACGCATC
ATCGCCGACAAATTCTTCCAGCTCAAAATTTATGCCTTACTGCTGGAACA
GGTCAAGGACCGAGTGCCCACGCGCCTCAAGCTTATTTACTTGGACGGTC
CCACTGTCATGTCAATGAAACTCCAAGAAGGTGATTTGGAGGAAGCGAGG
GAGGAGCTGCTATCCCTGTGGAAAGGGATCGTGGACGCCTGGGAGAACGA
CGCCTTTCCCGCCAAGCCAGGCAAGCTATGTGAATGGTGTTCGTTTAAAA
CGATTTGTCCTGCTTGGAATTTCGCGAGGGAGGAGGAGGAGGGGGAGCAG
AGGGGAGAGGAGGGAAGGAGGGAGGAGTGGCAGCTGTGACGGCTGTGACG
GCCACGACGGGGCTAGAGGGAGGAGAAGGGGGGAAAGGAGGACGGATTTA
ATGTGCTGTAGGTAGTGGTGAGTGATATAATTCGATAGTGACCGAAAAGC
ATGATTGACAAAGAAAATGTGAAAACCCCAGCT
back to top

protein sequence of jgi.p|Nanoce1779_2|571555

>mRNA_1269-protein ID=mRNA_1269-protein|Name=jgi.p|Nanoce1779_2|571555|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MLRWRVKFKSWDRTLLFDKVETPADEEPVMREFRMKVPFPDGPSVTGILD
RVDADKESGEWIVVDYKTGKAPALKYSPAVNERIIADKFFQLKIYALLLE
QVKDRVPTRLKLIYLDGPTVMSMKLQEGDLEEAREELLSLWKGIVDAWEN
DAFPAKPGKLCEWCSFKTICPAWNFAREEEEGEQRGEEGRREEWQL*
back to top

mRNA from alignment at scaffold_1:151545..153117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Nanoce1779_2|571555|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_1:151545..153117- (Nannochloropsis oceanica)
GTCTGGTTGAAGAAGAAGGACAAGTACGTGAAGGAATTGTTTCCGACGGT
GGAGAGCCAGCGGGCGTTCGGCTTGGCGGGGCTTAAGCTCCTATCGAACT
ACTTCAAGGTATGTGTCGAATGTGTTTCTTTGCTCTTATCTTGGCCTATC
CCTCCCTCCCTCCCTCCCTTCCTTCCTTCCCCGTTTATTTTAGTGTGTGG
ACAATCCAATTCTGTCCGATGTTGCGTTGGCGGGTGAAATTTAAAAGCTG
GGATCGAACTTTACTTTTTGATAAGGTACCAGTGCGCTTTGTCCAACCCA
TCATTCCTTCTCCCCTCCCTCATTCCTTTCCTCCCTCCTCCTTCTTCGTT
TCGGTCGGCGTCGTAGCTTTTGACAGATTGACCTCTCCCTCACCATCCCC
TCCCTCCGTCCCTTCCTCCCGCCCCTAGGTGGAAACCCCCGCGGACGAAG
AGCCCGTGATGCGTGAGTTTCGAATGAAGGTACCCTTCCCCGATGGGCCG
TCCGTGACGGGCATCCTTGACAGGGTCGACGCCGACAAGGAGAGTGGGGA
GTGGATTGTGGTTGATTACAAAACAGGTATGGGAGGGGCCGAAGGAGGGA
AGCAGGAAGGGAGGAAGGGCGGGAGGGAGGGAGGACGCGACTGAATCCAG
CTTCGTGAGAAATGCGATATGTACTCAGTAGTCCGACTTCTCACGTTTCT
ACTCATCCAGTCCTCCCTCCCTCTCAACCCCCCTCCCTTCCACCCACCTT
CAGGCAAGGCTCCGGCACTCAAGTACTCTCCCGCCGTGAATGAACGCATC
ATCGCCGACAAATTCTTCCAGCTCAAAATTTATGCCTTACTGCTGGAACA
GGTCAAGGACCGAGTGCCCACGCGCCTCAAGCTTATTTACTTGGGTATGA
CCCTCCTCCTCCCTCCTTCCCTCCTTCGTGCCCTCCCTCCCTTCTTCCCT
CTCTCCATTTTGCGAGCTACCCGTCTGTATGGTGGCCATAGCTAGTCAAG
AACAAGGCTAATCCCTACCCTTCGCCTATCCGCCATAGTCAGACCCCTCC
CCTCCCTCCTTCGCGCCCTACCCACTTTCAACTCCGTCCCTTTCTTCGTC
CCTCCTTCTTTCCCGTGCCCACCATCCCTTCCCTCCCATTTCCCCCTTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCAGACGGTCCCACTGTCAT
GTCAATGAAACTCCAAGAAGGTGATTTGGAGGAAGCGAGGGAGGAGCTGC
TATCCCTGTGGAAAGGGATCGTGGACGCCTGGGAGAACGACGCCTTTCCC
GCCAAGCCAGGCAAGCTATGTGAATGGTGTTCGTTTAAAACGATTTGTCC
TGCTTGGAATTTCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGGGGAGAGG
AGGGAAGGAGGGAGGAGTGGCAGCTGTGACGGCTGTGACGGCCACGACGG
GGCTAGAGGGAGGAGAAGGGGGGAAAGGAGGACGGATTTAATGTGCTGTA
GGTAGTGGTGAGTGATATAATTCGATAGTGACCGAAAAGCATGATTGACA
AAGAAAATGTGAAAACCCCAGCT
back to top

Coding sequence (CDS) from alignment at scaffold_1:151545..153117-

>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Nanoce1779_2|571555|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_1:151545..153117- (Nannochloropsis oceanica)
ACGGTCCCACTGTCATGTCAATGAAACTCCAAGAAGGTGATTTGGAGGAA
GCGAGGGAGGAGCTGCTATCCCTGTGGAAAGGGATCGTGGACGCCTGGGA
GAACGACGCCTTTCCCGCCAAGCCAGGCAAGCTATGTGAATGGTGTTCGT
TTAAAACGATTTGTCCTGCTTGGAATTTCGCGAGGGAGGAGGAGGAGGGG
GAGCAGAGGGGAGAGGAGGGAAGGAGGGAGGAGTGGCAGCTGTGAGCAAG
GCTCCGGCACTCAAGTACTCTCCCGCCGTGAATGAACGCATCATCGCCGA
CAAATTCTTCCAGCTCAAAATTTATGCCTTACTGCTGGAACAGGTCAAGG
ACCGAGTGCCCACGCGCCTCAAGCTTATTTACTTGGGTGGAAACCCCCGC
GGACGAAGAGCCCGTGATGCGTGAGTTTCGAATGAAGGTACCCTTCCCCG
ATGGGCCGTCCGTGACGGGCATCCTTGACAGGGTCGACGCCGACAAGGAG
AGTGGGGAGTGGATTGTGGTTGATTACAAAACAGATGTTGCGTTGGCGGG
TGAAATTTAAAAGCTGGGATCGAACTTTACTTTTTGATAAGACGGTCCCA
CTGTCATGTCAATGAAACTCCAAGAAGGTGATTTGGAGGAAGCGAGGGAG
GAGCTGCTATCCCTGTGGAAAGGGATCGTGGACGCCTGGGAGAACGACGC
CTTTCCCGCCAAGCCAGGCAAGCTATGTGAATGGTGTTCGTTTAAAACGA
TTTGTCCTGCTTGGAATTTCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGG
GGAGAGGAGGGAAGGAGGGAGGAGTGGCAGCTGTGAGCAAGGCTCCGGCA
CTCAAGTACTCTCCCGCCGTGAATGAACGCATCATCGCCGACAAATTCTT
CCAGCTCAAAATTTATGCCTTACTGCTGGAACAGGTCAAGGACCGAGTGC
CCACGCGCCTCAAGCTTATTTACTTGGGTGGAAACCCCCGCGGACGAAGA
GCCCGTGATGCGTGAGTTTCGAATGAAGGTACCCTTCCCCGATGGGCCGT
CCGTGACGGGCATCCTTGACAGGGTCGACGCCGACAAGGAGAGTGGGGAG
TGGATTGTGGTTGATTACAAAACAGATGTTGCGTTGGCGGGTGAAATTTA
AAAGCTGGGATCGAACTTTACTTTTTGATAAGACGGTCCCACTGTCATGT
CAATGAAACTCCAAGAAGGTGATTTGGAGGAAGCGAGGGAGGAGCTGCTA
TCCCTGTGGAAAGGGATCGTGGACGCCTGGGAGAACGACGCCTTTCCCGC
CAAGCCAGGCAAGCTATGTGAATGGTGTTCGTTTAAAACGATTTGTCCTG
CTTGGAATTTCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGGGGAGAGGAG
GGAAGGAGGGAGGAGTGGCAGCTGTGAGCAAGGCTCCGGCACTCAAGTAC
TCTCCCGCCGTGAATGAACGCATCATCGCCGACAAATTCTTCCAGCTCAA
AATTTATGCCTTACTGCTGGAACAGGTCAAGGACCGAGTGCCCACGCGCC
TCAAGCTTATTTACTTGGGTGGAAACCCCCGCGGACGAAGAGCCCGTGAT
GCGTGAGTTTCGAATGAAGGTACCCTTCCCCGATGGGCCGTCCGTGACGG
GCATCCTTGACAGGGTCGACGCCGACAAGGAGAGTGGGGAGTGGATTGTG
GTTGATTACAAAACAGATGTTGCGTTGGCGGGTGAAATTTAAAAGCTGGG
ATCGAACTTTACTTTTTGATAAGACGGTCCCACTGTCATGTCAATGAAAC
TCCAAGAAGGTGATTTGGAGGAAGCGAGGGAGGAGCTGCTATCCCTGTGG
AAAGGGATCGTGGACGCCTGGGAGAACGACGCCTTTCCCGCCAAGCCAGG
CAAGCTATGTGAATGGTGTTCGTTTAAAACGATTTGTCCTGCTTGGAATT
TCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGGGGAGAGGAGGGAAGGAGG
GAGGAGTGGCAGCTGTGAGCAAGGCTCCGGCACTCAAGTACTCTCCCGCC
GTGAATGAACGCATCATCGCCGACAAATTCTTCCAGCTCAAAATTTATGC
CTTACTGCTGGAACAGGTCAAGGACCGAGTGCCCACGCGCCTCAAGCTTA
TTTACTTGGGTGGAAACCCCCGCGGACGAAGAGCCCGTGATGCGTGAGTT
TCGAATGAAGGTACCCTTCCCCGATGGGCCGTCCGTGACGGGCATCCTTG
ACAGGGTCGACGCCGACAAGGAGAGTGGGGAGTGGATTGTGGTTGATTAC
AAAACAGATGTTGCGTTGGCGGGTGAAATTTAAAAGCTGGGATCGAACTT
TACTTTTTGATAAG
back to top
Synonyms
Publications