jgi.p|Nanoce1779_2|571554, mRNA_1268 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571554
Unique NamemRNA_1268
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_1:150727..151302 +

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Properties
Property NameValue
TranscriptId571640
TrackFilteredModels2
ProteinId571554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:150727..151302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571554gene_1268Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571554mRNA_1268-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1268CDS_1268Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1268 ID=mRNA_1268|Name=jgi.p|Nanoce1779_2|571554|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
AGTGGACGCCATTCTGGCCGCCGAGGACCGTGTACCCGTCGTTTTTAACA
CCACAGCCGCATCCCTAGGGTTCCTGGACCCTGCTTGTAAAGAGGAAGAC
TTGCCCGCTCGGTCTCGAGTGGAGCTTCCGCTCTGGCTAGCCCAATCCCT
CGAAGCCAAAAATATGGTGCGTCTCGAGCTACCCAAGCATTACTCCGCGC
GCTTCCGTGAAGATCTTTTAGCTGGGCCCGAGGCCGTCGACATTCGTGAT
CGGAGCGTCTTCTTCTACGAGACGGGCACGGCACTCGCCAGGATTAAACG
GGACGAGCACCTGCAACGGACCATGCGGATGGTATTTTCCGGACAGCGTT
TTCGAGACATTTTGGACGCAAGTTTGAACAGTGGCGGGGATGACATGACT
GATTTTCTGAAGGACTTGCCGCATGCGGAGCGGATTTTGTTTGATTCTGG
ATTTGTGGGGTCGAGGGAATATGAGGCGTATAAAAAGGGGACACACGCTC
AGATCGGAATGGCGGAGGTGTTGAAGGTGAGTAGTGCCATAAGTGGAGGG
GGAAAAGAGGGGGAAAAATGAGGCGG
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protein sequence of jgi.p|Nanoce1779_2|571554

>mRNA_1268-protein ID=mRNA_1268-protein|Name=jgi.p|Nanoce1779_2|571554|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEHL
QRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGS
REYEAYKKGTHAQIGMAEVLKVSSAISGGGKEGEK*
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mRNA from alignment at scaffold_1:150727..151302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1268 ID=mRNA_1268|Name=jgi.p|Nanoce1779_2|571554|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at scaffold_1:150727..151302+ (Nannochloropsis oceanica)
AGTGGACGCCATTCTGGCCGCCGAGGACCGTGTACCCGTCGTTTTTAACA
CCACAGCCGCATCCCTAGGGTTCCTGGACCCTGCTTGTAAAGAGGAAGAC
TTGCCCGCTCGGTCTCGAGTGGAGCTTCCGCTCTGGCTAGCCCAATCCCT
CGAAGCCAAAAATATGGTGCGTCTCGAGCTACCCAAGCATTACTCCGCGC
GCTTCCGTGAAGATCTTTTAGCTGGGCCCGAGGCCGTCGACATTCGTGAT
CGGAGCGTCTTCTTCTACGAGACGGGCACGGCACTCGCCAGGATTAAACG
GGACGAGCACCTGCAACGGACCATGCGGATGGTATTTTCCGGACAGCGTT
TTCGAGACATTTTGGACGCAAGTTTGAACAGTGGCGGGGATGACATGACT
GATTTTCTGAAGGACTTGCCGCATGCGGAGCGGATTTTGTTTGATTCTGG
ATTTGTGGGGTCGAGGGAATATGAGGCGTATAAAAAGGGGACACACGCTC
AGATCGGAATGGCGGAGGTGTTGAAGGTGAGTAGTGCCATAAGTGGAGGG
GGAAAAGAGGGGGAAAAATGAGGCGG
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Coding sequence (CDS) from alignment at scaffold_1:150727..151302+

>mRNA_1268 ID=mRNA_1268|Name=jgi.p|Nanoce1779_2|571554|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_1:150727..151302+ (Nannochloropsis oceanica)
ATGGTGCGTCTCGAGCTACCCAAGCATTACTCCGCGCGCTTCCGTGAAGA
TCTTTTAGCTGGGCCCGAGGCCGTCGACATTCGTGATCGGAGCGTCTTCT
TCTACGAGACGGGCACGGCACTCGCCAGGATTAAACGGGACGAGCACCTG
CAACGGACCATGCGGATGGTATTTTCCGGACAGCGTTTTCGAGACATTTT
GGACGCAAGTTTGAACAGTGGCGGGGATGACATGACTGATTTTCTGAAGG
ACTTGCCGCATGCGGAGCGGATTTTGTTTGATTCTGGATTTGTGGGGTCG
AGGGAATATGAGGCGTATAAAAAGGGGACACACGCTCAGATCGGAATGGC
GGAGGTGTTGAAGGTGAGTAGTGCCATAAGTGGAGGGGGAAAAGAGGGGG
AAAAATGA
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Synonyms
Publications