jgi.p|Nanoce1779_2|571543, mRNA_1264 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571543
Unique Name	mRNA_1264
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2961
Alignment location	scaffold_1:139376..142609 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571629
Track	FilteredModels2
ProteinId	571543

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:139376..142609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571543	gene_1264	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571543	mRNA_1264-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1264	CDS_1264	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:139376..142609+
coding sequence from alignment at scaffold_1:139376..142609+

mRNA sequence

>mRNA_1264 ID=mRNA_1264|Name=jgi.p|Nanoce1779_2|571543|organism=Nannochloropsis oceanica|type=mRNA|length=2961bp
ACAGGGGCAGAAAGAGTGCACGGCGACAAGAAATAAGAGGGCTACTTAGA
GCGTATGGGCTGGCTCGAGCGGTACCATGCATCGCCGCACCAGCAATCGA
TCAACACGGCCCTAATGCTTGCGGGCATCCTCTCCATCTCTATGCCTCTG
GTCGTCGAGGGGGTTCAATTTATTCTACGCTTGCGACGTCGCAAAGACCA
AGACACGACGTCCTTCCAAACCTCGACCAATGAAGTCTATCGCGTCGTTC
TCACTGGCGGCCCTTGCTCCGGCAAAACCTCCTCTTTGGCGCACGTTCGT
GCGGCATGCAAGCAAGCAGGATTCGAGGCGCTGGTGGTGCCTGAGGTCCC
TACTATTTTGATGGAGGGTGGGGCGACTTACCCTGGATTGGAGGCAGGGC
ATCGTCTGATTGCGTTTGAAGCGGCCCTGATTCGATTACAACTTCAGATA
GAAGAGTCTTTTGTGACGATTGCCCGATCGTTAGGGAAGCCGACGGTTGT
TTTAATGGATCGAGGAAGTGTAGACATTTGTGCATATTTAATGCCCAAGG
ATTGGCTGGCAACGTTGTCAGCGTTGGGAGGGTTGACAACTTCGGATTTG
ATCTCGCGGTATCACCAGGTGATCCATCTCGTGACCGCAGCGGATGGAGC
AGAGTCGTTTTACCAATTGAGCAACAACACCGCCCGCACCGAGTCCCCCA
AAGATGCTAGGGTCATCGATCGACGCATCCAGGCCGCCTGGTCGCAGCAC
CCACACCTTGTAGTCTTATGCAATGACACAGATTTTGCCGGCAAGTTGGA
CAAAGCCACCAATGCTGTCTTAACAGGGGCAAGGGAGTTTTTTAGGGCAG
GAGCTGGGAGCGGTACTCCTGCTGTAGGAGATGTTGGGAAGGGCAAAGGG
GAGGGAGGACAAGACGCCAGGGGGAGATAACAATAGAAGGGTGGAGGACT
GGCATACACTTTTCAGGGTCGCACAAGACTTTAGGTGGCTCAAGAACTCA
AGACCTGAGCACACAGCCCATGGAGGTATTCTGCACGGTACAATGTTGGC
CTGCTTCGGCACGCCTTATGTAAAGCCCTCTCGAGGGTGCACTCAAAAGA
AGCAAGTCGTGTTAATTTATTTGAAATCGTTCCTGTACTTTTGAGCACAC
AATGAGCCGCGTGCGCTACCCTTGAAATAAACTAGGAAAGACTGAAGAAG
TCATGAAGGAGCAAGCCAAAGAAAATGTGTCCTGAGTCTATAGCTCTGAG
TCCTCGTAGCGCGTCAGAGCGAATCTCAGGGCGTTTCATCTTTTCGCAGC
ATCCATGTTGCCCAACGAGCTCGAAAGTATGCCACACACACCGTCACATG
AATTCACTTTCTCACAAAAAGACGCCAAAACACACCCAACACGAGCCTTA
GAATGGGCCAGCTCGAAACGTCCTCTTGTACTATTTGTTCGAGGGGAGCC
TTCCAATCACACATTTTGCCGGTAAGAACACGTAGGGCATGGGACATAGG
GGCACATGCACTTACTCCTTGTGTGCTTTCAATCAGTGAAGGGCGAGGTA
TGAGTGGGAAAGAGGTAACCAAGGACCCCCCCGGGGACTATATCCGCCCT
ACGGCATGATGTCGGTTTACGCGGTTCACCGCCTTCTTTTCCCTCCTCTT
TCTGTCTCGTTCGACGGTGCTCCTCGTCCGGCCTTCACGACAAATGCCCT
GTATATCTCGCCCTTTGACTCATGCGCACACCAAGCACCACGAATCCACT
GGGCATGGCACTGACCACGCTCTTTCCTATATCCCTTTTTCCGGACGCAG
TTCACAGGCAAGCCACGGAAGCAAGCGTTCTTCTTCCACCTCTAGCACGC
AGCACTCTTCCACCAGTGGTAGTGCCCTCCTCCCTTGCTTCGACAACAAT
TTGCTCCTCAGCCTGCGGCTGCATTTGTATTTGTGAGTAGAACTAGAAGA
CGATAATGTCGTCTTTGATGCCACGAGGGGGCGGTGGCGATAATGGTGGA
GGGATCTCTAAGAGCGGCTGCGAGTATGGAATGCAGGTACCGCAGCCTCC
CACCGCTCATCACGGTACAAGTCCCATGCCTAGTGAATACGAGGACGAGG
AAGAGGATATGGATCGTCCTCGGACCTTTGCTGATTTGGAAGAGGAAAAC
GATGCTTTCCGTATCGAAGTCCACAAGTTGCGGAGGCAAGTACGCGAGCA
GGAAGTAGCGCATGCGAAAGAGGTCAAGGATCTGTTGTACCGATTGTTAA
AAGCAGAAAAGCGCGCGGCAGCTGCAGCTGTAGCGGCCGTAGCAAAGGGG
GCGAGTGTCAAGGCGGTGAGGGGAGGAATTAGCGATTCCGAGATGGAGGA
GGTCGAGGGGGAGGAGGATGAGGAAGAAGCAGCTGTAGCGGCGGGTAGAG
CAGCACCTGGGCAGAAGAGGGAAAAGAAGGGGGACAAGTCGAAGGAGGAA
GGGGGAGAAGGAAAAGAAGTGGGACAGGCAACGGAAGGAGTGATGGAGAG
CGAGGCGAAAAGAACAACGCGGGCTGCTGCCTCGGGCTCTGCTTCAATTC
CTCCTTCCCCTGCCCGTGCTGCTCGTGCTGCACCTGGGGCGGCTGCTGCG
CGCCTTCCTCCCTCCTCCCCGCGTTCCAAGGCATCCACCCTGAAGGCAGC
ACGCAAGACGCAAGAGTCCCGATTGTTACGCGAGCTGAAGCAGATCGGAG
CCGTGGATGAGGAGGCGACGAATGTGAGGGAAGACCTGGACGTTAAGAGG
TTGGTCGGGCTGGGCATGTGGAAGTGGTTCCCGGCAGACAGAGGGGGAGG
GGGTGGAGGGGGTGGAGGGGCAGCAAGGTCGAAGATGCTGCAATTCCTGG
GCGTGTTTACTAAGACTAGTGGGGGCGGGAAGGAGGGAGGGAAGGAGAGG
AGGGTTTGCGTGGAGTATAAGCACTCGGGGGAAGAGGAGTGGTGGACAAG
TGGGGAGTTGG

protein sequence of jgi.p|Nanoce1779_2|571543

>mRNA_1264-protein ID=mRNA_1264-protein|Name=jgi.p|Nanoce1779_2|571543|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MGWLERYHASPHQQSINTALMLAGILSISMPLVVEGVQFILRLRRRKDQD
TTSFQTSTNEVYRVVLTGGPCSGKTSSLAHVRAACKQAGFEALVVPEVPT
ILMEGGATYPGLEAGHRLIAFEAALIRLQLQIEESFVTIARSLGKPTVVL
MDRGSVDICAYLMPKDWLATLSALGGLTTSDLISRYHQVIHLVTAADGAE
SFYQLSNNTARTESPKDARVIDRRIQAAWSQHPHLVVLCNDTDFAGKLDK
ATNAVLTGAREFFRAGAGSGTPAVGDVGKGKGEGGQDARGR*

mRNA from alignment at scaffold_1:139376..142609+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1264 ID=mRNA_1264|Name=jgi.p|Nanoce1779_2|571543|organism=Nannochloropsis oceanica|type=mRNA|length=3234bp|location=Sequence derived from alignment at scaffold_1:139376..142609+ (Nannochloropsis oceanica)
ACAGGGGCAGAAAGAGTGCACGGCGACAAGAAATAAGAGGGCTACTTAGA
GCGTATGGGCTGGCTCGAGCGGTACCATGCATCGCCGCACCAGCAATCGA
TCAACACGGCCCTAATGCTTGCGGGCATCCTCTCCATCTCTATGCCTCTG
GTCGTCGAGGGGGTTCAATTTATTCTACGCTTGCGACGTCGCAAAGGTAA
GAGGGGCTCTGGCTGGGTTTCTTGTCTGGGCAGTCTGGTCTCATCCAAAG
GCTCGAATCCTCCACGCGCAGTGTTACCCTTTCCCAACCCTCTCTCTCCT
ACCCTAGACCAAGACACGACGTCCTTCCAAACCTCGACCAATGAAGTCTA
TCGCGTCGTTCTCACTGGCGGCCCTTGCTCCGGCAAAACCTCCTCTTTGG
CGCACGTTCGTGCGGCATGCAAGCAAGCAGGATTCGAGGCGCTGGTGGTG
CCTGAGGTCCCTACTATTTTGATGGAGGGTGGGGCGACTTACCCTGGATT
GGAGGCAGGGCATCGTCTGATTGCGTTTGAAGCGGCCCTGATTCGATTAC
AACTTCAGATAGAAGAGTCTTTTGTGACGATTGCCCGATCGTTAGGGAAG
CCGACGGTTGTTTTAATGGATCGAGGAAGTGTAGACATTTGTGCATATTT
AATGCCCAAGGATTGGCTGGCAACGTTGTCAGCGTTGGGAGGGTTGACAA
CTTCGGATTTGATCTCGCGGTATCACCAGGTGATCCATCTCGTGACCGCA
GCGGATGGAGCAGAGTCGTTTTACCAATTGAGGTATTTGTAGTGTGTGTG
CATGCGCATGTTTCTCCCTTTTCTGTTTTCTCCGTTCCTCCCCTATCCCG
CACCAAAGCAGACCATCCATCTTATGATAAGGAGATATGTACCGTTTAAT
TTTGCCCTCCTTCTCTCCGATTTCCCACCTTCTTTCCCTCACAGCAACAA
CACCGCCCGCACCGAGTCCCCCAAAGATGCTAGGGTCATCGATCGACGCA
TCCAGGCCGCCTGGTCGCAGCACCCACACCTTGTAGTCTTATGCAATGAC
ACAGATTTTGCCGGCAAGTTGGACAAAGCCACCAATGCTGTCTTAACAGG
GGCAAGGGAGTTTTTTAGGGCAGGAGCTGGGAGCGGTACTCCTGCTGTAG
GAGATGTTGGGAAGGGCAAAGGGGAGGGAGGACAAGACGCCAGGGGGAGA
TAACAATAGAAGGGTGGAGGACTGGCATACACTTTTCAGGGTCGCACAAG
ACTTTAGGTGGCTCAAGAACTCAAGACCTGAGCACACAGCCCATGGAGGT
ATTCTGCACGGTACAATGTTGGCCTGCTTCGGCACGCCTTATGTAAAGCC
CTCTCGAGGGTGCACTCAAAAGAAGCAAGTCGTGTTAATTTATTTGAAAT
CGTTCCTGTACTTTTGAGCACACAATGAGCCGCGTGCGCTACCCTTGAAA
TAAACTAGGAAAGACTGAAGAAGTCATGAAGGAGCAAGCCAAAGAAAATG
TGTCCTGAGTCTATAGCTCTGAGTCCTCGTAGCGCGTCAGAGCGAATCTC
AGGGCGTTTCATCTTTTCGCAGCATCCATGTTGCCCAACGAGCTCGAAAG
TATGCCACACACACCGTCACATGAATTCACTTTCTCACAAAAAGACGCCA
AAACACACCCAACACGAGCCTTAGAATGGGCCAGCTCGAAACGTCCTCTT
GTACTATTTGTTCGAGGGGAGCCTTCCAATCACACATTTTGCCGGTAAGA
ACACGTAGGGCATGGGACATAGGGGCACATGCACTTACTCCTTGTGTGCT
TTCAATCAGTGAAGGGCGAGGTATGAGTGGGAAAGAGGTAACCAAGGACC
CCCCCGGGGACTATATCCGCCCTACGGCATGATGTCGGTTTACGCGGTTC
ACCGCCTTCTTTTCCCTCCTCTTTCTGTCTCGTTCGACGGTGCTCCTCGT
CCGGCCTTCACGACAAATGCCCTGTATATCTCGCCCTTTGACTCATGCGC
ACACCAAGCACCACGAATCCACTGGGCATGGCACTGACCACGCTCTTTCC
TATATCCCTTTTTCCGGACGCAGTTCACAGGCAAGCCACGGAAGCAAGCG
TTCTTCTTCCACCTCTAGCACGCAGCACTCTTCCACCAGTGGTAGTGCCC
TCCTCCCTTGCTTCGACAACAATTTGCTCCTCAGCCTGCGGCTGCATTTG
TATTTGTGAGTAGAACTAGAAGACGATAATGTCGTCTTTGATGCCACGAG
GGGGCGGTGGCGATAATGGTGGAGGGATCTCTAAGAGCGGCTGCGAGTAT
GGAATGCAGGTACCGCAGCCTCCCACCGCTCATCACGGTACAAGTCCCAT
GCCTAGTGAATACGAGGACGAGGAAGAGGATATGGATCGTCCTCGGACCT
TTGCTGATTTGGAAGAGGAAAACGATGCTTTCCGTATCGAAGTCCACAAG
TTGCGGAGGCAAGTACGCGAGCAGGAAGTAGCGCATGCGAAAGAGGTCAA
GGATCTGTTGTACCGATTGTTAAAAGCAGAAAAGCGCGCGGCAGCTGCAG
CTGTAGCGGCCGTAGCAAAGGGGGCGAGTGTCAAGGCGGTGAGGGGAGGA
ATTAGCGATTCCGAGATGGAGGAGGTCGAGGGGGAGGAGGATGAGGAAGA
AGCAGCTGTAGCGGCGGGTAGAGCAGCACCTGGGCAGAAGAGGGAAAAGA
AGGGGGACAAGTCGAAGGAGGAAGGGGGAGAAGGAAAAGAAGTGGGACAG
GCAACGGAAGGAGTGATGGAGAGCGAGGCGAAAAGAACAACGCGGGCTGC
TGCCTCGGGCTCTGCTTCAATTCCTCCTTCCCCTGCCCGTGCTGCTCGTG
CTGCACCTGGGGCGGCTGCTGCGCGCCTTCCTCCCTCCTCCCCGCGTTCC
AAGGCATCCACCCTGAAGGCAGCACGCAAGACGCAAGAGTCCCGATTGTT
ACGCGAGCTGAAGCAGATCGGAGCCGTGGATGAGGAGGCGACGAATGTGA
GGGAAGACCTGGACGTTAAGAGGTTGGTCGGGCTGGGCATGTGGAAGTGG
TTCCCGGCAGACAGAGGGGGAGGGGGTGGAGGGGGTGGAGGGGCAGCAAG
GTCGAAGATGCTGCAATTCCTGGGCGTGTTTACTAAGACTAGTGGGGGCG
GGAAGGAGGGAGGGAAGGAGAGGAGGGTTTGCGTGGAGTATAAGCACTCG
GGGGAAGAGGAGTGGTGGACAAGTGGGGAGTTGG

Coding sequence (CDS) from alignment at scaffold_1:139376..142609+

>mRNA_1264 ID=mRNA_1264|Name=jgi.p|Nanoce1779_2|571543|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_1:139376..142609+ (Nannochloropsis oceanica)
ATGGGCTGGCTCGAGCGGTACCATGCATCGCCGCACCAGCAATCGATCAA
CACGGCCCTAATGCTTGCGGGCATCCTCTCCATCTCTATGCCTCTGGTCG
TCGAGGGGGTTCAATTTATTCTACGCTTGCGACGTCGCAAAGACCAAGAC
ACGACGTCCTTCCAAACCTCGACCAATGAAGTCTATCGCGTCGTTCTCAC
TGGCGGCCCTTGCTCCGGCAAAACCTCCTCTTTGGCGCACGTTCGTGCGG
CATGCAAGCAAGCAGGATTCGAGGCGCTGGTGGTGCCTGAGGTCCCTACT
ATTTTGATGGAGGGTGGGGCGACTTACCCTGGATTGGAGGCAGGGCATCG
TCTGATTGCGTTTGAAGCGGCCCTGATTCGATTACAACTTCAGATAGAAG
AGTCTTTTGTGACGATTGCCCGATCGTTAGGGAAGCCGACGGTTGTTTTA
ATGGATCGAGGAAGTGTAGACATTTGTGCATATTTAATGCCCAAGGATTG
GCTGGCAACGTTGTCAGCGTTGGGAGGGTTGACAACTTCGGATTTGATCT
CGCGGTATCACCAGGTGATCCATCTCGTGACCGCAGCGGATGGAGCAGAG
TCGTTTTACCAATTGAGCAACAACACCGCCCGCACCGAGTCCCCCAAAGA
TGCTAGGGTCATCGATCGACGCATCCAGGCCGCCTGGTCGCAGCACCCAC
ACCTTGTAGTCTTATGCAATGACACAGATTTTGCCGGCAAGTTGGACAAA
GCCACCAATGCTGTCTTAACAGGGGCAAGGGAGTTTTTTAGGGCAGGAGC
TGGGAGCGGTACTCCTGCTGTAGGAGATGTTGGGAAGGGCAAAGGGGAGG
GAGGACAAGACGCCAGGGGGAGATAAATGGGCTGGCTCGAGCGGTACCAT
GCATCGCCGCACCAGCAATCGATCAACACGGCCCTAATGCTTGCGGGCAT
CCTCTCCATCTCTATGCCTCTGGTCGTCGAGGGGGTTCAATTTATTCTAC
GCTTGCGACGTCGCAAAGACCAAGACACGACGTCCTTCCAAACCTCGACC
AATGAAGTCTATCGCGTCGTTCTCACTGGCGGCCCTTGCTCCGGCAAAAC
CTCCTCTTTGGCGCACGTTCGTGCGGCATGCAAGCAAGCAGGATTCGAGG
CGCTGGTGGTGCCTGAGGTCCCTACTATTTTGATGGAGGGTGGGGCGACT
TACCCTGGATTGGAGGCAGGGCATCGTCTGATTGCGTTTGAAGCGGCCCT
GATTCGATTACAACTTCAGATAGAAGAGTCTTTTGTGACGATTGCCCGAT
CGTTAGGGAAGCCGACGGTTGTTTTAATGGATCGAGGAAGTGTAGACATT
TGTGCATATTTAATGCCCAAGGATTGGCTGGCAACGTTGTCAGCGTTGGG
AGGGTTGACAACTTCGGATTTGATCTCGCGGTATCACCAGGTGATCCATC
TCGTGACCGCAGCGGATGGAGCAGAGTCGTTTTACCAATTGAGCAACAAC
ACCGCCCGCACCGAGTCCCCCAAAGATGCTAGGGTCATCGATCGACGCAT
CCAGGCCGCCTGGTCGCAGCACCCACACCTTGTAGTCTTATGCAATGACA
CAGATTTTGCCGGCAAGTTGGACAAAGCCACCAATGCTGTCTTAACAGGG
GCAAGGGAGTTTTTTAGGGCAGGAGCTGGGAGCGGTACTCCTGCTGTAGG
AGATGTTGGGAAGGGCAAAGGGGAGGGAGGACAAGACGCCAGGGGGAGAT
AAATGGGCTGGCTCGAGCGGTACCATGCATCGCCGCACCAGCAATCGATC
AACACGGCCCTAATGCTTGCGGGCATCCTCTCCATCTCTATGCCTCTGGT
CGTCGAGGGGGTTCAATTTATTCTACGCTTGCGACGTCGCAAAGACCAAG
ACACGACGTCCTTCCAAACCTCGACCAATGAAGTCTATCGCGTCGTTCTC
ACTGGCGGCCCTTGCTCCGGCAAAACCTCCTCTTTGGCGCACGTTCGTGC
GGCATGCAAGCAAGCAGGATTCGAGGCGCTGGTGGTGCCTGAGGTCCCTA
CTATTTTGATGGAGGGTGGGGCGACTTACCCTGGATTGGAGGCAGGGCAT
CGTCTGATTGCGTTTGAAGCGGCCCTGATTCGATTACAACTTCAGATAGA
AGAGTCTTTTGTGACGATTGCCCGATCGTTAGGGAAGCCGACGGTTGTTT
TAATGGATCGAGGAAGTGTAGACATTTGTGCATATTTAATGCCCAAGGAT
TGGCTGGCAACGTTGTCAGCGTTGGGAGGGTTGACAACTTCGGATTTGAT
CTCGCGGTATCACCAGGTGATCCATCTCGTGACCGCAGCGGATGGAGCAG
AGTCGTTTTACCAATTGAGCAACAACACCGCCCGCACCGAGTCCCCCAAA
GATGCTAGGGTCATCGATCGACGCATCCAGGCCGCCTGGTCGCAGCACCC
ACACCTTGTAGTCTTATGCAATGACACAGATTTTGCCGGCAAGTTGGACA
AAGCCACCAATGCTGTCTTAACAGGGGCAAGGGAGTTTTTTAGGGCAGGA
GCTGGGAGCGGTACTCCTGCTGTAGGAGATGTTGGGAAGGGCAAAGGGGA
GGGAGGACAAGACGCCAGGGGGAGATAA

Synonyms

Publications