jgi.p|Nanoce1779_2|571540, mRNA_1263 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571540
Unique NamemRNA_1263
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1369
Alignment locationscaffold_1:137856..139224 -

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Properties
Property NameValue
TranscriptId571626
TrackFilteredModels2
ProteinId571540
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:137856..139224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571540gene_1263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571540mRNA_1263-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1263CDS_1263Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1263 ID=mRNA_1263|Name=jgi.p|Nanoce1779_2|571540|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp
AATAGTCCCACAGATGTTCTAACCAAAAAGGAAGAGGACGCAGTCATGAA
GCCCGAGCTTAATGCGCTGTCGTCGACCTCCTCCCCCCCTACCGAGCCTC
CTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAGCACAA
GCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAATTTGT
CTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTCCAAGA
ACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTCCCGTC
CCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCCCACGG
ATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCACAGATA
TAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTCCAGCC
TCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAACCCGA
ATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGGGAAAG
TTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGGGTGTG
GATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCGTGGGC
ATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGAGTTTC
GGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGATGGAAA
GGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGACGGGGG
TGTAGACTGGAAGGATGTCAGGATAAAAGGATGGAAGGAGTATGGGACGA
GTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGGTTAAG
GCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAGATGGA
TGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGTTACAA
AACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCCTCCAT
CGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAGCCACA
GGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATCTCGGA
AAAATTACGCTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTATTGATG
AACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTCAATGC
ACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAGAGAAG
AAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGGAGTAA
GGGAGGGAGTGAAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|571540

>mRNA_1263-protein ID=mRNA_1263-protein|Name=jgi.p|Nanoce1779_2|571540|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MKPELNALSSTSSPPTEPPTEPPTVEATSLSSTAQAPAPDQQEAPTKELQ
FVFPAFRPRILALRNVSKNDGKVLIKLRPPLTCPVPSPPSFSSKLWQRHA
HGSYRSYYGARRQASSTDIASAAAIIPSTIHLPPASRSNPPTDARLSLLQ
PEWFAGKDFLDIGTNTGKVAWEICLYFKPRRVVGVDIDPELIRVAKEKLA
WASRREGGRNDIEKWVEFRCQDFVGRRMLKRRRWKGDGQECIGGAAAEED
GGVDWKDVRIKGWKEYGTSESREFGEERQNTEEVKAEKKEDEKDDENEVQ
MDVEGTEKYDIISCFSVTKHIHLQGGDAALRRLLHRVHARLRPGGRFILE
PQAWRTYRKRRHASVESRKNYALLRLRPPFKDVLMNEVGFESVEDLGIPL
NAPVGYRRPMYCFVKRREEAEESVERGQKGSVGE*
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mRNA from alignment at scaffold_1:137856..139224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1263 ID=mRNA_1263|Name=jgi.p|Nanoce1779_2|571540|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_1:137856..139224- (Nannochloropsis oceanica)
AATAGTCCCACAGATGTTCTAACCAAAAAGGAAGAGGACGCAGTCATGAA
GCCCGAGCTTAATGCGCTGTCGTCGACCTCCTCCCCCCCTACCGAGCCTC
CTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAGCACAA
GCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAATTTGT
CTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTCCAAGA
ACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTCCCGTC
CCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCCCACGG
ATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCACAGATA
TAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTCCAGCC
TCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAACCCGA
ATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGGGAAAG
TTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGGGTGTG
GATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCGTGGGC
ATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGAGTTTC
GGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGATGGAAA
GGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGACGGGGG
TGTAGACTGGAAGGATGTCAGGATAAAAGGATGGAAGGAGTATGGGACGA
GTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGGTTAAG
GCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAGATGGA
TGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGTTACAA
AACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCCTCCAT
CGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAGCCACA
GGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATCTCGGA
AAAATTACGCTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTATTGATG
AACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTCAATGC
ACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAGAGAAG
AAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGGAGTAA
GGGAGGGAGTGAAGGAAGG
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Coding sequence (CDS) from alignment at scaffold_1:137856..139224-

>mRNA_1263 ID=mRNA_1263|Name=jgi.p|Nanoce1779_2|571540|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_1:137856..139224- (Nannochloropsis oceanica)
ATGAAGCCCGAGCTTAATGCGCTGTCGTCGACCTCCTCCCCCCCTACCGA
GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG
CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA
TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC
CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC
CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC
CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC
AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC
CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA
CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG
GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG
GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG
TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA
GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT
GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC
GGGGGTGTAGACTGGAAGGATGTCAGGATAAAAGGATGGAAGGAGTATGG
GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG
TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG
ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT
TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC
TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG
CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC
TCGGAAAAATTACGCTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT
TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC
AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG
AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG
AGTAA
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Synonyms
Publications