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Properties
| Property Name | Value |
|---|
| TranscriptId | 571620 |
| Track | FilteredModels2 |
| ProteinId | 571534 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:135431..137386 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1262 ID=mRNA_1262|Name=jgi.p|Nanoce1779_2|571534|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
ACAGGCATATCTTTTGCCTTCTTAGGGGGCAATCGGAGCCGCATTTGCAC
ATTTGCCATGCCTCGCTCTATCCTCCTCTGCTTGAGCTTCTGTTGCTTCT
GCGTTACCGTCGCCCAAGCCAAGCCTGCATCTGTCCGAGGGGGACTTCCT
ACATTTGACGACGCCTTCACGGCCGGTGTGGCTGTATCTGACGCGCCTAT
TGCCATTAGCGATGGCGATCCTTGGGCGCCTGTGACCAAGGCAATTAATG
ATTACCACATGACAGATTTTGCCGTGGTGGTCTCGAATGCGTCGGGCATC
CAGTACCTGTACGAGAAGGGCAATATTTCCTACACCGACACCGTCATGAA
CGTGGCCAGCACCACCAAGTGGGTCTCCGGCACCATGATCATGCGCGTCG
TAGCCTCTGGCGTCTTGAAGCTGAACGACTACTGCCATACCTACTTCCCC
TGGTGGACACGTAATCCCAATGATCCCCGCTCCCGCATCCAGCTCAAGCA
TTTGCTATCCTTTACATCGGGATATTATCAGCTCACTTACGGCTCCTCCG
TCCCGTGCTTTCGCAATTCCAGCATGGATTACGTGGCATGTGTCCGAGAG
CTGTATGAGACTGTCGACTTGCGTTGGGAGCCAGGGACAGTGTGGGACTA
CAGCTCCTTACATCTGAAAATTGCGGGAGGCATGGCAGTGGCGGCATCGG
GGAAGAGCATTCGGGTTTTGTTGGACGAGACGCTAGCGGCATTGGGGATG
ACCAAGTCGTATTACGACATGGACCAGAATCCGGAGCTGGCGGGTAGTTT
GTATACGACTGGGGAAGACTACAACAAGTTCTTGGAATCTTTGTACTTTC
ACAGAATTCTGCCCGCAGAGATTGTGAAAGAGATGGAGAGTGATCACACC
CCCTCCCCCGCAGTGAGTGCTTCATATAAAAGCTGGGGGCTGGGCATGGC
CGTCGGGCACTATTCCTACACAAACTGGTTGGAGTGCTGGGGCTCGCTGC
CGGAGCCGCAGCCGTTCCGCCCGGAATGCTACGAAAAAAGCATCCACACG
TCTCCGGGGGTATTCGGGTACTGGCCATTGATCGATCGTTTCAATAATTA
CTGGATGCAAATTGTCTACAAAGGTCCGGCAGTTATTGGCTGCATCGACG
GGTGGGTGGCCCGCGGCGTCATCAAGCCTGTGGTCGACGGAGTGATGGGC
GACGAGAAGGTAATTCCGTCGAGGAAGTTTGATGTCGAGGCAGAGAAGCA
ACGGCTCCGAGAGCTCCTTGACCTGGACCTGCTTGCGCAATGGCCAAACT
AAGACTTAACTAGAAGCATTTCAATTGGTGGAGGTAAACAGACAGACGGA
GAAATGCGGATGGGGAAATAAAGAATCGTATTGATATGTGCCAGGGTTTA
AACCTTAGGAGGAGAACGATTGCAAGCAGAAAGACGGCATTGGAATGAAA
AACAAAGAGGCACCTCTGTGCGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|571534 >mRNA_1262-protein ID=mRNA_1262-protein|Name=jgi.p|Nanoce1779_2|571534|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPRSILLCLSFCCFCVTVAQAKPASVRGGLPTFDDAFTAGVAVSDAPIAI
SDGDPWAPVTKAINDYHMTDFAVVVSNASGIQYLYEKGNISYTDTVMNVA
STTKWVSGTMIMRVVASGVLKLNDYCHTYFPWWTRNPNDPRSRIQLKHLL
SFTSGYYQLTYGSSVPCFRNSSMDYVACVRELYETVDLRWEPGTVWDYSS
LHLKIAGGMAVAASGKSIRVLLDETLAALGMTKSYYDMDQNPELAGSLYT
TGEDYNKFLESLYFHRILPAEIVKEMESDHTPSPAVSASYKSWGLGMAVG
HYSYTNWLECWGSLPEPQPFRPECYEKSIHTSPGVFGYWPLIDRFNNYWM
QIVYKGPAVIGCIDGWVARGVIKPVVDGVMGDEKVIPSRKFDVEAEKQRL
RELLDLDLLAQWPN* back to topmRNA from alignment at scaffold_1:135431..137386- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1262 ID=mRNA_1262|Name=jgi.p|Nanoce1779_2|571534|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp|location=Sequence derived from alignment at scaffold_1:135431..137386- (Nannochloropsis oceanica)
ACAGGCATATCTTTTGCCTTCTTAGGGGGCAATCGGAGCCGCATTTGCAC
ATTTGCCATGCCTCGCTCTATCCTCCTCTGCTTGAGCTTCTGTTGCTTCT
GCGTTACCGTCGCCCAAGCCAAGCCTGCATCTGTCCGAGGGGGACTTCCT
ACATTTGACGACGCCTTCACGGCCGGTGTGGCTGTATCTGACGCGCCTAT
TGCCATTAGCGATGGCGATCCTTGGGCGCCTGTGACCAAGGCAATTAATG
ATTACCACATGACAGATTTTGCCGTGGTGGTCTCGAATGCGTCGGGCATC
CAGTACCTGTACGAGAAGGGCAATATTTCCTACACCGACACCGTCATGAG
TAAGTGGGTAACATAGTTGCTTTATCTAATGTCTATATATTTCTTCTCTC
ACCGACGTTTTGGCCGCCTAACCTCCCTCCCGCTCCCCAGACGTGGCCAG
CACCACCAAGTGGGTCTCCGGCACCATGATCATGCGCGTCGTAGCCTCTG
GCGTCTTGAAGCTGAACGACTACTGCCATACCTACTTCCCCTGGTGGACA
CGTAATCCCAATGATCCCCGCTCCCGCATCCAGCTCAAGCATTTGCTATC
CTTTACATCGGGATATTATCAGCTCACTTACGGCTCCTCCGTCCCGTGCT
TTCGCAATTCCAGCATGGATTACGTGGCATGTGTCCGAGAGCTGTATGAG
ACTGTCGACTTGCGTTGGGAGCCAGGGACAGTGTGGGACTACAGCTCCTT
ACATCTGAAAATTGCGGGAGGCATGGCAGTGGCGGCATCGGGGAAGAGCA
TTCGGGTTTTGTTGGACGAGACGCTAGCGGCATTGGGGATGACCAAGTCG
TATTACGACATGGACCAGAATCCGGAGCTGGCGGGTAGTTTGTATACGAC
TGGTGTGTAGTGGGACAGAGAGCGAGATTGAAGGCCAACTGATGAAAAGG
GACGTCCGAGATCTAATTCCCGCCCGCCCGCCCTTTCCTTCCCTTGCTTC
CCTTTTTCCCCTCAGGGGAAGACTACAACAAGTTCTTGGAATCTTTGTAC
TTTCACAGAATTCTGCCCGCAGAGATTGTGAAAGAGATGGAGAGTGATCA
CACCCCCTCCCCCGCAGTGAGTGCTTCATATAAAAGCTGGGGGCTGGGCA
TGGCCGTCGGGCACTATTCCTACACAAACTGGTTGGAGTGCTGGGGCTCG
CTGCCGGAGCCGCAGCCGTTCCGCCCGGAATGCTACGAAAAAAGCATCCA
CACGTCTCCGGGGGTATTCGGTCTGTAGTAAAGGGAGGGAGGGAGGAAGT
AATAGAGGGTTTTTGGGTGAGCTTCATGAGGGCAGACAGTAGGAAATAAA
TATCTCAATGAAACTCACATTGTTTCCCCACTCTTCTATCCCTCCCCCCT
CTCATTTCCACGTTTCTCGTCAGGGTACTGGCCATTGATCGATCGTTTCA
ATAATTACTGGATGCAAATTGTCTACAAAGGTCCGGCAGTTATTGGCTGC
ATCGACGGGTGGGTGGCCCGCGGCGTCATCAAGCCTGTGGTCGACGGAGT
GATGGTGAGTGATGCAGTATGAATTTTCTTTCTTGAGCCCATCCCACCAT
TTGCGTCTTGAGCGTTTGCCATATGGTTGGTTTCTGACATTTGCTTCTTC
CCTTCCTCTCGTTTCCCAAAAAAATCAGGGCGACGAGAAGGTAATTCCGT
CGAGGAAGTTTGATGTCGAGGCAGAGAAGCAACGGCTCCGAGAGCTCCTT
GACCTGGACCTGCTTGCGCAATGGCCAAACTAAGACTTAACTAGAAGCAT
TTCAATTGGTGGAGGTAAACAGACAGACGGAGAAATGCGGATGGGGAAAT
AAAGAATCGTATTGATATGTGCCAGGGTTTAAACCTTAGGAGGAGAACGA
TTGCAAGCAGAAAGACGGCATTGGAATGAAAAACAAAGAGGCACCTCTGT
GCGTAA back to topCoding sequence (CDS) from alignment at scaffold_1:135431..137386- >mRNA_1262 ID=mRNA_1262|Name=jgi.p|Nanoce1779_2|571534|organism=Nannochloropsis oceanica|type=CDS|length=6225bp|location=Sequence derived from alignment at scaffold_1:135431..137386- (Nannochloropsis oceanica)
GGCGACGAGAAGGTAATTCCGTCGAGGAAGTTTGATGTCGAGGCAGAGAA
GCAACGGCTCCGAGAGCTCCTTGACCTGGACCTGCTTGCGCAATGGCCAA
ACTAAGGTACTGGCCATTGATCGATCGTTTCAATAATTACTGGATGCAAA
TTGTCTACAAAGGTCCGGCAGTTATTGGCTGCATCGACGGGTGGGTGGCC
CGCGGCGTCATCAAGCCTGTGGTCGACGGAGTGATGGGGAAGACTACAAC
AAGTTCTTGGAATCTTTGTACTTTCACAGAATTCTGCCCGCAGAGATTGT
GAAAGAGATGGAGAGTGATCACACCCCCTCCCCCGCAGTGAGTGCTTCAT
ATAAAAGCTGGGGGCTGGGCATGGCCGTCGGGCACTATTCCTACACAAAC
TGGTTGGAGTGCTGGGGCTCGCTGCCGGAGCCGCAGCCGTTCCGCCCGGA
ATGCTACGAAAAAAGCATCCACACGTCTCCGGGGGTATTCGACGTGGCCA
GCACCACCAAGTGGGTCTCCGGCACCATGATCATGCGCGTCGTAGCCTCT
GGCGTCTTGAAGCTGAACGACTACTGCCATACCTACTTCCCCTGGTGGAC
ACGTAATCCCAATGATCCCCGCTCCCGCATCCAGCTCAAGCATTTGCTAT
CCTTTACATCGGGATATTATCAGCTCACTTACGGCTCCTCCGTCCCGTGC
TTTCGCAATTCCAGCATGGATTACGTGGCATGTGTCCGAGAGCTGTATGA
GACTGTCGACTTGCGTTGGGAGCCAGGGACAGTGTGGGACTACAGCTCCT
TACATCTGAAAATTGCGGGAGGCATGGCAGTGGCGGCATCGGGGAAGAGC
ATTCGGGTTTTGTTGGACGAGACGCTAGCGGCATTGGGGATGACCAAGTC
GTATTACGACATGGACCAGAATCCGGAGCTGGCGGGTAGTTTGTATACGA
CTGATGCCTCGCTCTATCCTCCTCTGCTTGAGCTTCTGTTGCTTCTGCGT
TACCGTCGCCCAAGCCAAGCCTGCATCTGTCCGAGGGGGACTTCCTACAT
TTGACGACGCCTTCACGGCCGGTGTGGCTGTATCTGACGCGCCTATTGCC
ATTAGCGATGGCGATCCTTGGGCGCCTGTGACCAAGGCAATTAATGATTA
CCACATGACAGATTTTGCCGTGGTGGTCTCGAATGCGTCGGGCATCCAGT
ACCTGTACGAGAAGGGCAATATTTCCTACACCGACACCGTCATGAGGCGA
CGAGAAGGTAATTCCGTCGAGGAAGTTTGATGTCGAGGCAGAGAAGCAAC
GGCTCCGAGAGCTCCTTGACCTGGACCTGCTTGCGCAATGGCCAAACTAA
GGTACTGGCCATTGATCGATCGTTTCAATAATTACTGGATGCAAATTGTC
TACAAAGGTCCGGCAGTTATTGGCTGCATCGACGGGTGGGTGGCCCGCGG
CGTCATCAAGCCTGTGGTCGACGGAGTGATGGGGAAGACTACAACAAGTT
CTTGGAATCTTTGTACTTTCACAGAATTCTGCCCGCAGAGATTGTGAAAG
AGATGGAGAGTGATCACACCCCCTCCCCCGCAGTGAGTGCTTCATATAAA
AGCTGGGGGCTGGGCATGGCCGTCGGGCACTATTCCTACACAAACTGGTT
GGAGTGCTGGGGCTCGCTGCCGGAGCCGCAGCCGTTCCGCCCGGAATGCT
ACGAAAAAAGCATCCACACGTCTCCGGGGGTATTCGACGTGGCCAGCACC
ACCAAGTGGGTCTCCGGCACCATGATCATGCGCGTCGTAGCCTCTGGCGT
CTTGAAGCTGAACGACTACTGCCATACCTACTTCCCCTGGTGGACACGTA
ATCCCAATGATCCCCGCTCCCGCATCCAGCTCAAGCATTTGCTATCCTTT
ACATCGGGATATTATCAGCTCACTTACGGCTCCTCCGTCCCGTGCTTTCG
CAATTCCAGCATGGATTACGTGGCATGTGTCCGAGAGCTGTATGAGACTG
TCGACTTGCGTTGGGAGCCAGGGACAGTGTGGGACTACAGCTCCTTACAT
CTGAAAATTGCGGGAGGCATGGCAGTGGCGGCATCGGGGAAGAGCATTCG
GGTTTTGTTGGACGAGACGCTAGCGGCATTGGGGATGACCAAGTCGTATT
ACGACATGGACCAGAATCCGGAGCTGGCGGGTAGTTTGTATACGACTGAT
GCCTCGCTCTATCCTCCTCTGCTTGAGCTTCTGTTGCTTCTGCGTTACCG
TCGCCCAAGCCAAGCCTGCATCTGTCCGAGGGGGACTTCCTACATTTGAC
GACGCCTTCACGGCCGGTGTGGCTGTATCTGACGCGCCTATTGCCATTAG
CGATGGCGATCCTTGGGCGCCTGTGACCAAGGCAATTAATGATTACCACA
TGACAGATTTTGCCGTGGTGGTCTCGAATGCGTCGGGCATCCAGTACCTG
TACGAGAAGGGCAATATTTCCTACACCGACACCGTCATGAGGCGACGAGA
AGGTAATTCCGTCGAGGAAGTTTGATGTCGAGGCAGAGAAGCAACGGCTC
CGAGAGCTCCTTGACCTGGACCTGCTTGCGCAATGGCCAAACTAAGGTAC
TGGCCATTGATCGATCGTTTCAATAATTACTGGATGCAAATTGTCTACAA
AGGTCCGGCAGTTATTGGCTGCATCGACGGGTGGGTGGCCCGCGGCGTCA
TCAAGCCTGTGGTCGACGGAGTGATGGGGAAGACTACAACAAGTTCTTGG
AATCTTTGTACTTTCACAGAATTCTGCCCGCAGAGATTGTGAAAGAGATG
GAGAGTGATCACACCCCCTCCCCCGCAGTGAGTGCTTCATATAAAAGCTG
GGGGCTGGGCATGGCCGTCGGGCACTATTCCTACACAAACTGGTTGGAGT
GCTGGGGCTCGCTGCCGGAGCCGCAGCCGTTCCGCCCGGAATGCTACGAA
AAAAGCATCCACACGTCTCCGGGGGTATTCGACGTGGCCAGCACCACCAA
GTGGGTCTCCGGCACCATGATCATGCGCGTCGTAGCCTCTGGCGTCTTGA
AGCTGAACGACTACTGCCATACCTACTTCCCCTGGTGGACACGTAATCCC
AATGATCCCCGCTCCCGCATCCAGCTCAAGCATTTGCTATCCTTTACATC
GGGATATTATCAGCTCACTTACGGCTCCTCCGTCCCGTGCTTTCGCAATT
CCAGCATGGATTACGTGGCATGTGTCCGAGAGCTGTATGAGACTGTCGAC
TTGCGTTGGGAGCCAGGGACAGTGTGGGACTACAGCTCCTTACATCTGAA
AATTGCGGGAGGCATGGCAGTGGCGGCATCGGGGAAGAGCATTCGGGTTT
TGTTGGACGAGACGCTAGCGGCATTGGGGATGACCAAGTCGTATTACGAC
ATGGACCAGAATCCGGAGCTGGCGGGTAGTTTGTATACGACTGATGCCTC
GCTCTATCCTCCTCTGCTTGAGCTTCTGTTGCTTCTGCGTTACCGTCGCC
CAAGCCAAGCCTGCATCTGTCCGAGGGGGACTTCCTACATTTGACGACGC
CTTCACGGCCGGTGTGGCTGTATCTGACGCGCCTATTGCCATTAGCGATG
GCGATCCTTGGGCGCCTGTGACCAAGGCAATTAATGATTACCACATGACA
GATTTTGCCGTGGTGGTCTCGAATGCGTCGGGCATCCAGTACCTGTACGA
GAAGGGCAATATTTCCTACACCGACACCGTCATGAGGCGACGAGAAGGTA
ATTCCGTCGAGGAAGTTTGATGTCGAGGCAGAGAAGCAACGGCTCCGAGA
GCTCCTTGACCTGGACCTGCTTGCGCAATGGCCAAACTAAGGTACTGGCC
ATTGATCGATCGTTTCAATAATTACTGGATGCAAATTGTCTACAAAGGTC
CGGCAGTTATTGGCTGCATCGACGGGTGGGTGGCCCGCGGCGTCATCAAG
CCTGTGGTCGACGGAGTGATGGGGAAGACTACAACAAGTTCTTGGAATCT
TTGTACTTTCACAGAATTCTGCCCGCAGAGATTGTGAAAGAGATGGAGAG
TGATCACACCCCCTCCCCCGCAGTGAGTGCTTCATATAAAAGCTGGGGGC
TGGGCATGGCCGTCGGGCACTATTCCTACACAAACTGGTTGGAGTGCTGG
GGCTCGCTGCCGGAGCCGCAGCCGTTCCGCCCGGAATGCTACGAAAAAAG
CATCCACACGTCTCCGGGGGTATTCGACGTGGCCAGCACCACCAAGTGGG
TCTCCGGCACCATGATCATGCGCGTCGTAGCCTCTGGCGTCTTGAAGCTG
AACGACTACTGCCATACCTACTTCCCCTGGTGGACACGTAATCCCAATGA
TCCCCGCTCCCGCATCCAGCTCAAGCATTTGCTATCCTTTACATCGGGAT
ATTATCAGCTCACTTACGGCTCCTCCGTCCCGTGCTTTCGCAATTCCAGC
ATGGATTACGTGGCATGTGTCCGAGAGCTGTATGAGACTGTCGACTTGCG
TTGGGAGCCAGGGACAGTGTGGGACTACAGCTCCTTACATCTGAAAATTG
CGGGAGGCATGGCAGTGGCGGCATCGGGGAAGAGCATTCGGGTTTTGTTG
GACGAGACGCTAGCGGCATTGGGGATGACCAAGTCGTATTACGACATGGA
CCAGAATCCGGAGCTGGCGGGTAGTTTGTATACGACTGATGCCTCGCTCT
ATCCTCCTCTGCTTGAGCTTCTGTTGCTTCTGCGTTACCGTCGCCCAAGC
CAAGCCTGCATCTGTCCGAGGGGGACTTCCTACATTTGACGACGCCTTCA
CGGCCGGTGTGGCTGTATCTGACGCGCCTATTGCCATTAGCGATGGCGAT
CCTTGGGCGCCTGTGACCAAGGCAATTAATGATTACCACATGACAGATTT
TGCCGTGGTGGTCTCGAATGCGTCGGGCATCCAGTACCTGTACGAGAAGG
GCAATATTTCCTACACCGACACCGTCATGAGGCGACGAGAAGGTAATTCC
GTCGAGGAAGTTTGATGTCGAGGCAGAGAAGCAACGGCTCCGAGAGCTCC
TTGACCTGGACCTGCTTGCGCAATGGCCAAACTAAGGTACTGGCCATTGA
TCGATCGTTTCAATAATTACTGGATGCAAATTGTCTACAAAGGTCCGGCA
GTTATTGGCTGCATCGACGGGTGGGTGGCCCGCGGCGTCATCAAGCCTGT
GGTCGACGGAGTGATGGGGAAGACTACAACAAGTTCTTGGAATCTTTGTA
CTTTCACAGAATTCTGCCCGCAGAGATTGTGAAAGAGATGGAGAGTGATC
ACACCCCCTCCCCCGCAGTGAGTGCTTCATATAAAAGCTGGGGGCTGGGC
ATGGCCGTCGGGCACTATTCCTACACAAACTGGTTGGAGTGCTGGGGCTC
GCTGCCGGAGCCGCAGCCGTTCCGCCCGGAATGCTACGAAAAAAGCATCC
ACACGTCTCCGGGGGTATTCGACGTGGCCAGCACCACCAAGTGGGTCTCC
GGCACCATGATCATGCGCGTCGTAGCCTCTGGCGTCTTGAAGCTGAACGA
CTACTGCCATACCTACTTCCCCTGGTGGACACGTAATCCCAATGATCCCC
GCTCCCGCATCCAGCTCAAGCATTTGCTATCCTTTACATCGGGATATTAT
CAGCTCACTTACGGCTCCTCCGTCCCGTGCTTTCGCAATTCCAGCATGGA
TTACGTGGCATGTGTCCGAGAGCTGTATGAGACTGTCGACTTGCGTTGGG
AGCCAGGGACAGTGTGGGACTACAGCTCCTTACATCTGAAAATTGCGGGA
GGCATGGCAGTGGCGGCATCGGGGAAGAGCATTCGGGTTTTGTTGGACGA
GACGCTAGCGGCATTGGGGATGACCAAGTCGTATTACGACATGGACCAGA
ATCCGGAGCTGGCGGGTAGTTTGTATACGACTGATGCCTCGCTCTATCCT
CCTCTGCTTGAGCTTCTGTTGCTTCTGCGTTACCGTCGCCCAAGCCAAGC
CTGCATCTGTCCGAGGGGGACTTCCTACATTTGACGACGCCTTCACGGCC
GGTGTGGCTGTATCTGACGCGCCTATTGCCATTAGCGATGGCGATCCTTG
GGCGCCTGTGACCAAGGCAATTAATGATTACCACATGACAGATTTTGCCG
TGGTGGTCTCGAATGCGTCGGGCATCCAGTACCTGTACGAGAAGGGCAAT
ATTTCCTACACCGACACCGTCATGA back to top
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