jgi.p|Nanoce1779_2|571524, mRNA_1260 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571524
Unique Name	mRNA_1260
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2220
Alignment location	scaffold_1:126942..129387 -

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Properties


Property Name	Value
TranscriptId	571610
Track	FilteredModels2
ProteinId	571524

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:126942..129387 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571524	gene_1260	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571524	mRNA_1260-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1260	CDS_1260	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:126942..129387-
coding sequence from alignment at scaffold_1:126942..129387-

mRNA sequence

>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
GTGGACGGGCACGACGAGCTGCTCTGTCGGTGACCGCCGCGCCATCCTCC
CGATCAGTATGGCGGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGCCGTT
GCTGCTGCTGTTGCTGCCGCTGCTGTTGCTGCTGTTGCTGCTTTTCCTGT
CCCTACTAGCACGATCACTGCCACAGCTCTCGGAAGAGCGGCGCTTTCCC
AGCCGTGCACCGCCCGCTACGAGAGAGCCTTGGAACATGCTTCCTCCTGT
TGCCGCAGAGGCGTTGCTGTAAGTGCTTTGCTGACCACTATCGCTACTAT
TGTTGCCGTTGTTGCTGTTGCTGCTATTTGAAGCAGCTGACATGGTGGAA
AAGACTAGAGGCTCTCTCGCTTCGCCGCTCGAAGAAGAGGAGGAGGAATT
GGAGGAGGAGGGGGTGGAGGGGGAGGAGGAAGGGGAGGAGTATGACAACG
CGCGTTGCTGCTGTCCTCGCTGTTCTTGATTATGGTGCTGCTGCTGTTGG
TGCGAGAGTGAATGCAGGTTCTTTATCGCCGGACTGTTATTAATGCTGGA
GGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGTAGACGTAG
TTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGGCCTCTTCT
CCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGCTGCAAGGT
TGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTG
GCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTCGTGCCCCA
TCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGACCGCTGCGA
GGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGACGACGAAT
CACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGCCGTACGAA
TCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCTTGGTTCAG
CACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACCATCCCTTC
CTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCGTTTCCGTC
AGCATATACTGTACCAACAACTGATAGAACTTCACCCTGCTGGCGGGGGC
CACGATCAGCCCAAACAAATAGGAGGGCAAAACTGCCGTCGCCGCAAACC
GGGCATTGGCCTCCTCCGTATCAAAATACTCCGAGGCAAAGTTATCGTCC
GCCCACAGCCGAAACACACCATTGGCATAGACAAAACCGCACACCGCCGC
AATGCCTCCTTCCTGCAACCCTGCCACGTACGCGGGCATGAATGCAGGGT
CTAGCAACTCGTCCATAGGGCGACAAGCGAGGGAAGGGTCCTCCTGCACC
TTCACTTGAGGCGCAAGCACCACCCCTTCAGGACCAGGAAAGGCAAGGAC
ACGAAGGAGGCTGCTGGTGGCGCCGCAGGTGATGTCAACCTTGTGTCGGT
AGCAGTACATGTCCCAAGTGCGGCTGGGGTGTAGGGGGAGACAGAGATGG
AGGGGGGAGGGGTTGGAAAGGGTAGCAGGAAGTGTGAGTAAAAGAGCGTG
TGGAAAAGAACGGGGCTCCTGTCAACTGCAGAGGCGTTGTCGACATTGTG
CCGGTAGCTGTTTAACCTCGCATATGGGACTGGATGACGGTGTGATAATT
GCTAAGGCCTTAAACTGTTGCAGTTCTCCGGTCGCCTTTAAACGCGAGGC
TATCTGCCCAAATATCCGCGCCGCTGTCTCGCAGTGTTCATACTGTTGCA
GTCCAGGCGGGGCGGCAAGCTCACCCAGCATGGCCCATCCAGGAGGACCA
ACCTCGCCTGATGCGGAGGCAGGCGTGGGGGTCACAGACATGCTGCTTCC
CGCGGCGCAGGATGGGGCAGGACTGAGGGTAGAGGAGGAGGCAGCGGAGG
AGGAGGGAGAGGAAGAAGAGGAGGAGGACGTGGGATCCCCTCGGTTGCTT
GAATTGCTACTTTCCATTGCACCGGCGCCTGGCTTGGGAGGAACCACACG
GTAGATTGTGGAAAAGGCGGACGAGGGTGCACAGGTGGCCATGCCTACGG
CGAGGCCTGATTTATCAGATGACGAGTTCACGTCGGCTGCTGCAGAGCCT
GCCCCAGCAGCACCTAATGGAGGCGCTGCAAGGCCTTTTCCCATGTGCAT
CATGGGGCCTGGCCTGTCCT

protein sequence of jgi.p|Nanoce1779_2|571524

>mRNA_1260-protein ID=mRNA_1260-protein|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MLEGAEEKEEDEEDEEVDVVFFSLTSPAAVSGAASSPVAPSRQSPCMAGC
CKVVVVVVVVAVAAAAAAAGAGAGAIPTPAARARAPSRAVDEGEKEKDLD
RCEACIGRNNDARPKEDDESPAETAPAARGAVKPYESSGRRFIAKHAYCP
WFSTTCLTRNSLATIPPSLPTVSVTMDMVVVPFVSVSIYCTNN*

mRNA from alignment at scaffold_1:126942..129387-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at scaffold_1:126942..129387- (Nannochloropsis oceanica)
GTGGACGGGCACGACGAGCTGCTCTGTCGGTGACCGCCGCGCCATCCTCC
CGATCAGTATGGCGGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGCCGTT
GCTGCTGCTGTTGCTGCCGCTGCTGTTGCTGCTGTTGCTGCTTTTCCTGT
CCCTACTAGCACGATCACTGCCACAGCTCTCGGAAGAGCGGCGCTTTCCC
AGCCGTGCACCGCCCGCTACGAGAGAGCCTTGGAACATGCTTCCTCCTGT
TGCCGCAGAGGCGTTGCTGTAAGTGCTTTGCTGACCACTATCGCTACTAT
TGTTGCCGTTGTTGCTGTTGCTGCTATTTGAAGCAGCTGACATGGTGGAA
AAGACTAGAGGCTCTCTCGCTTCGCCGCTCGAAGAAGAGGAGGAGGAATT
GGAGGAGGAGGGGGTGGAGGGGGAGGAGGAAGGGGAGGAGTATGACAACG
CGCGTTGCTGCTGTCCTCGCTGTTCTTGATTATGGTGCTGCTGCTGTTGG
TGCGAGAGTGAATGCAGGTTCTTTATCGCCGGACTGTTATTAATGCTGGA
GGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGTAGACGTAG
TTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGGCCTCTTCT
CCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGCTGCAAGGT
TGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTG
GCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTCGTGCCCCA
TCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGACCGCTGCGA
GGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGACGACGAAT
CACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGCCGTACGAA
TCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCTTGGTTCAG
CACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACCATCCCTTC
CTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCGTTTCCGTC
AGCATATACTGTACCAACAACTGATAGAACTTCACCCTGCTGGCGGGGGC
CACGATCAGCCCAAACAAATAGGAGGGCAAAACTGCCGTCGCCGCAAACC
GGGCATTGGCCTCCTCCGTATCAAAATACTCCGAGGCAAAGTTATCGTCC
GCCCACAGCCGAAACACACCATTGGCATAGACAAAACCGCACACCGCCGC
AATGCCTCCTTCCTGCAACCCTGCCACGTACGCGGGCATGAATGCAGGGT
CTAGCAACTCGTCCATAGGGCGACAAGCGAGGGAAGGGTCCTCCTGCACC
TTCACTTGAGGCGCAAGCACCACCCCTTCAGGACCAGGAAAGGCAAGGAC
ACGAAGGAGGCTGCTGGTGGCGCCGCAGGTGATGTCAACCTTGTGTCGGT
AGCAGTACATGTCCCAAGTGCGGCTGGGGTGTAGGGGGAGACAGAGATGG
AGGGGGGAGGGGTTGGAAAGGGTAGCAGGAAGTGTGAGTAAAAGAGCGTG
TGGAAAAGAACGGGGCTCCTGTCAACTGCAGAGGCGTTGTCGACATTGTG
CCGGTAGCTGTTTAACCTCGCATATGGGACTGGATGACGGTGTGCTAGGG
GTGGTAGGGAGGGGTGGCAGGGGAGAGACGGCTGAATTGTTTGTGTTGGG
ACGCGAAATGGAGGCTGATAGGAAAGAGATGGCTTTGTGACATACATGGG
GGGACTTACGAATGACAAGAAGGAAAAAGAGTGCATAGCCACAGTTGGCA
CGCCCACACAATCAACTTGAAACGTCCCACACATCCATGCCCACTAACGA
CCACCCCTCTCTCTACTTACATAATTGCTAAGGCCTTAAACTGTTGCAGT
TCTCCGGTCGCCTTTAAACGCGAGGCTATCTGCCCAAATATCCGCGCCGC
TGTCTCGCAGTGTTCATACTGTTGCAGTCCAGGCGGGGCGGCAAGCTCAC
CCAGCATGGCCCATCCAGGAGGACCAACCTCGCCTGATGCGGAGGCAGGC
GTGGGGGTCACAGACATGCTGCTTCCCGCGGCGCAGGATGGGGCAGGACT
GAGGGTAGAGGAGGAGGCAGCGGAGGAGGAGGGAGAGGAAGAAGAGGAGG
AGGACGTGGGATCCCCTCGGTTGCTTGAATTGCTACTTTCCATTGCACCG
GCGCCTGGCTTGGGAGGAACCACACGGTAGATTGTGGAAAAGGCGGACGA
GGGTGCACAGGTGGCCATGCCTACGGCGAGGCCTGATTTATCAGATGACG
AGTTCACGTCGGCTGCTGCAGAGCCTGCCCCAGCAGCACCTAATGGAGGC
GCTGCAAGGCCTTTTCCCATGTGCATCATGGGGCCTGGCCTGTCCT

Coding sequence (CDS) from alignment at scaffold_1:126942..129387-

>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_1:126942..129387- (Nannochloropsis oceanica)
ATGCTGGAGGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGT
AGACGTAGTTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGG
CCTCTTCTCCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGC
TGCAAGGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGC
TGCTGCTGGCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTC
GTGCCCCATCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGAC
CGCTGCGAGGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGA
CGACGAATCACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGC
CGTACGAATCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCT
TGGTTCAGCACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACC
ATCCCTTCCTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCG
TTTCCGTCAGCATATACTGTACCAACAACTGA

Synonyms

Publications