jgi.p|Nanoce1779_2|571521, mRNA_1259 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571521
Unique Name	mRNA_1259
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	881
Alignment location	scaffold_1:124654..125534 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571607
Track	FilteredModels2
ProteinId	571521

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:124654..125534 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571521	gene_1259	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571521	mRNA_1259-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1259	CDS_1259	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:124654..125534-
coding sequence from alignment at scaffold_1:124654..125534-

mRNA sequence

>mRNA_1259 ID=mRNA_1259|Name=jgi.p|Nanoce1779_2|571521|organism=Nannochloropsis oceanica|type=mRNA|length=881bp
CCGACGAGTGCGCCTCCCTCTCCTCCTCCTCCCCTCCCCCTCCTCCTGCT
CCTGCTCCTCTCTCTGCTTCTTATTCTCTTCAATGCTGTAGCTATTCAGC
TCCCACCAGCGCAAGGACACATCGTGATTGCATGCCGTCACCACAACCGT
TACCTCTTTCTCCTTCCCATCCTCCCTTCCTTCTTCCTCCTCCTCCGGGG
AAGGCTTCAAAGCCAGCAACGCCACATCACAGCATTCATCCAACCTATGT
CGTCCCGACAACCCCAACACGTCGTCCTCCTCCTCATACTCCTCATACTC
CTTCTTCTCCTCCGCCTCACCTTGATCCTCTTCACCATTTACCTCCTCCT
CCTCCTCCATTTTTGGCCTCCCTCTCTCTACCCGCCGACGCGGTGCTCCC
TTCGAAAAAGCGCTCGTCAATGGCAACACCGGCACCTCAGTCTTTTCTGA
CCCTAATCCTCCCCTCCCCCCGCCCTCCTCCTCCACCTCTTCTTCCTCCT
CTTCCTCTTCTTTCTCTTCATCGTCTTCAGCTGACCACAAAAAGAGGCGA
TCAGGACAAGAGGCGGCAACAAAGGATTTGGGGCCCGTGGCTGTTAGAAA
CACACAAGCCGGGTGAGAGACAGGTAGGGAGTACAAGTGGTGGAAGACCG
AGGGGGGGTTAGGGAGAAACGAAGAGGGGGAGGAGGAGGAACTTGTGGAG
GGTGGGATGAGCATAAGGCGTTGAGAGCCATGGAGGAGCATGAAGGAACC
ATTGCCAAAGCCAATCACAAGACGGGCACGGATTTCCTCCTCGTCCTCCT
TCCCTCCCTCAGGTGTGAGGCGGAAAGACTGCTTGTAGCTACCTGTTGTC
ATACCCCTCCTACTGCTGCTGCTGCTGCTAC

protein sequence of jgi.p|Nanoce1779_2|571521

>mRNA_1259-protein ID=mRNA_1259-protein|Name=jgi.p|Nanoce1779_2|571521|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MPSPQPLPLSPSHPPFLLPPPPGKASKPATPHHSIHPTYVVPTTPTRRPP
PHTPHTPSSPPPHLDPLHHLPPPPPPFLASLSLPADAVLPSKKRSSMATP
APQSFLTLILPSPRPPPPPLLPPLPLLSLHRLQLTTKRGDQDKRRQQRIW
GPWLLETHKPGERQVGSTSGGRPRGG*

mRNA from alignment at scaffold_1:124654..125534-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1259 ID=mRNA_1259|Name=jgi.p|Nanoce1779_2|571521|organism=Nannochloropsis oceanica|type=mRNA|length=881bp|location=Sequence derived from alignment at scaffold_1:124654..125534- (Nannochloropsis oceanica)
CCGACGAGTGCGCCTCCCTCTCCTCCTCCTCCCCTCCCCCTCCTCCTGCT
CCTGCTCCTCTCTCTGCTTCTTATTCTCTTCAATGCTGTAGCTATTCAGC
TCCCACCAGCGCAAGGACACATCGTGATTGCATGCCGTCACCACAACCGT
TACCTCTTTCTCCTTCCCATCCTCCCTTCCTTCTTCCTCCTCCTCCGGGG
AAGGCTTCAAAGCCAGCAACGCCACATCACAGCATTCATCCAACCTATGT
CGTCCCGACAACCCCAACACGTCGTCCTCCTCCTCATACTCCTCATACTC
CTTCTTCTCCTCCGCCTCACCTTGATCCTCTTCACCATTTACCTCCTCCT
CCTCCTCCATTTTTGGCCTCCCTCTCTCTACCCGCCGACGCGGTGCTCCC
TTCGAAAAAGCGCTCGTCAATGGCAACACCGGCACCTCAGTCTTTTCTGA
CCCTAATCCTCCCCTCCCCCCGCCCTCCTCCTCCACCTCTTCTTCCTCCT
CTTCCTCTTCTTTCTCTTCATCGTCTTCAGCTGACCACAAAAAGAGGCGA
TCAGGACAAGAGGCGGCAACAAAGGATTTGGGGCCCGTGGCTGTTAGAAA
CACACAAGCCGGGTGAGAGACAGGTAGGGAGTACAAGTGGTGGAAGACCG
AGGGGGGGTTAGGGAGAAACGAAGAGGGGGAGGAGGAGGAACTTGTGGAG
GGTGGGATGAGCATAAGGCGTTGAGAGCCATGGAGGAGCATGAAGGAACC
ATTGCCAAAGCCAATCACAAGACGGGCACGGATTTCCTCCTCGTCCTCCT
TCCCTCCCTCAGGTGTGAGGCGGAAAGACTGCTTGTAGCTACCTGTTGTC
ATACCCCTCCTACTGCTGCTGCTGCTGCTAC

Coding sequence (CDS) from alignment at scaffold_1:124654..125534-

>mRNA_1259 ID=mRNA_1259|Name=jgi.p|Nanoce1779_2|571521|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_1:124654..125534- (Nannochloropsis oceanica)
ATGCCGTCACCACAACCGTTACCTCTTTCTCCTTCCCATCCTCCCTTCCT
TCTTCCTCCTCCTCCGGGGAAGGCTTCAAAGCCAGCAACGCCACATCACA
GCATTCATCCAACCTATGTCGTCCCGACAACCCCAACACGTCGTCCTCCT
CCTCATACTCCTCATACTCCTTCTTCTCCTCCGCCTCACCTTGATCCTCT
TCACCATTTACCTCCTCCTCCTCCTCCATTTTTGGCCTCCCTCTCTCTAC
CCGCCGACGCGGTGCTCCCTTCGAAAAAGCGCTCGTCAATGGCAACACCG
GCACCTCAGTCTTTTCTGACCCTAATCCTCCCCTCCCCCCGCCCTCCTCC
TCCACCTCTTCTTCCTCCTCTTCCTCTTCTTTCTCTTCATCGTCTTCAGC
TGACCACAAAAAGAGGCGATCAGGACAAGAGGCGGCAACAAAGGATTTGG
GGCCCGTGGCTGTTAGAAACACACAAGCCGGGTGAGAGACAGGTAGGGAG
TACAAGTGGTGGAAGACCGAGGGGGGGTTAG

Synonyms

Publications