jgi.p|Nanoce1779_2|571510, mRNA_1258 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571510
Unique NamemRNA_1258
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_1:120175..121696 +

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Properties
Property NameValue
TranscriptId571596
TrackFilteredModels2
ProteinId571510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:120175..121696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571510gene_1258Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571510mRNA_1258-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1258CDS_1258Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1258 ID=mRNA_1258|Name=jgi.p|Nanoce1779_2|571510|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
CTCCAATCCCTAGTCCTTGCAGCAGCTTCGTCGCAGATCCGCCACCGCCT
TTCTTTTCTCCGCCCTGCCCTCCATCTCCCCCTCCTACGCGCACCGTGTC
AGTGTACGTCCCCACCACCCGCTTCTTGTCCACGTGCTGCTCCTCCTTCA
CCCCTTCCTTCAAGGCCTCATGTACCGTGATATTAAATAAAGAATGTTCT
CTAAGCACTCTCTCGAGCTCCACCAGCTGCATGCAACTAAACTCATCCCC
CGCCATGCTCATGCCCTTCGTCCCCTTGGCCAGCTTGTACTTGACCCATT
TCTCCATCCCTCTCAACCCCCCTCCCTCTTCTTTGCTGATGGTCTCGGTG
CGAAGCTTTACTTCAAGTCTTCCTTTTTTGCCCCGGTGCTTGAGCCCGAC
GGCGTCATTTGTCACGTGTAGGTAGGTGTCGGTGCGCTTCGGCGGGGAGG
GGGATGAATTCGGGAGGGAGGAAGGAAAGGACGAAGAGGTGAAATGCTGG
TCGATTCATCCGACTTGTCTCTCTGTCCTTCTCGATACACGAGAATGTGC
ATCCTGCCATTTCTTCATCCGCACTGACAACTTTCAATATCACAGACATC
CGGACGAAGGGAAGGTGAGACGCAAGAACAATGGGACAAGCAAACACGGG
CGTGGGTAGGCGAGATCATTAGTTAGCCCGGGCAATGCGCTGACAGCATG
TGTACGCTTACATATCGGATCGCACCCCTTTCTCTCATACCTTCACTTAC
CTCCTCCAATTCATTCCCCTGCGTCCGAGCCGCCTTGAGACTTTGGAGTA
GCGGAGGGTCGTGGAAAAATGGGAATGAAATCCCCTCAATGGCCGATTCG
AGGAAGAAAACACGCCATTCGACCACATCGCTACCTCCTCCCATAAATTT
ACTCAGTGTTGAAGCTGCTGTGGTAGTGGTACGCGCAGGAGTGGAGCGAG
GGTCAGGTGCGGGGCGGGATGGGGAGGCTAAGGAGGTCCGAATCTTGATG
GTGCAACATGTCCGTGTTCAAGTTTCTTCACTGAACAAGCATAGCCCTAA
ACAAGCTCCACAGGCAATGACAAGAATGAGGAGAAAAAGAAAAGGCCACC
CCTTTCGCTGATGCTGCCTTCACCCACGTGCTCGATCCTATGTCTTGCCA
CCGGCAGCCCCGTCAAGGAGGACCCCTCATCTTCC
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protein sequence of jgi.p|Nanoce1779_2|571510

>mRNA_1258-protein ID=mRNA_1258-protein|Name=jgi.p|Nanoce1779_2|571510|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MCTLTYRIAPLSLIPSLTSSNSFPCVRAALRLWSSGGSWKNGNEIPSMAD
SRKKTRHSTTSLPPPINLLSVEAAVVVVRAGVERGSGAGRDGEAKEVRIL
MVQHVRVQVSSLNKHSPKQAPQAMTRMRRKRKGHPFR*
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mRNA from alignment at scaffold_1:120175..121696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1258 ID=mRNA_1258|Name=jgi.p|Nanoce1779_2|571510|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at scaffold_1:120175..121696+ (Nannochloropsis oceanica)
CTCCAATCCCTAGTCCTTGCAGCAGCTTCGTCGCAGATCCGCCACCGCCT
TTCTTTTCTCCGCCCTGCCCTCCATCTCCCCCTCCTACGCGCACCGTGTC
AGTGTACGTCCCCACCACCCGCTTCTTGTCCACGTGCTGCTCCTCCTTCA
CCCCTTCCTTCAAGGCCTCATGTACCGTGATATTAAATAAAGAATGTTCT
CTAAGCACTCTCTCGAGCTCCACCAGCTGCATGCAACTAAACTCATCCCC
CGCCATGCTCATGCCCTTCGTCCCCTTGGCCAGCTTGTACTTGACCCATT
TCTCCATCCCTCTCAACCCCCCTCCCTCTTCTTTGCTGATGGTCTCGGTG
CGAAGCTTTACTTCAAGTCTTCCTTTTTTGCCCCGGTGCTTGAGCCCGAC
GGCGTCATTTGTCACGTGTAGGTAGGTGTCGGTGCGCTTCGGCGGGGAGG
GGGATGAATTCGGGAGGGAGGAAGGAAAGGACGAAGAGGTGAAATGCTGG
TCGATTCATCCGACTTGTCTCTCTGTCCTTCTCGATACACGAGAATGTGC
ATCCTGCCATTTCTTCATCCGCACTGACAACTTTCAATATCACAGACATC
CGGACGAAGGGAAGGTGAGACGCAAGAACAATGGGACAAGCAAACACGGG
CGTGGGTAGGCGAGATCATTAGTTAGCCCGGGCAATGCGCTGACAGCATG
TGTACGCTTACATATCGGATCGCACCCCTTTCTCTCATACCTTCACTTAC
CTCCTCCAATTCATTCCCCTGCGTCCGAGCCGCCTTGAGACTTTGGAGTA
GCGGAGGGTCGTGGAAAAATGGGAATGAAATCCCCTCAATGGCCGATTCG
AGGAAGAAAACACGCCATTCGACCACATCGCTACCTCCTCCCATAAATTT
ACTCAGTGTTGAAGCTGCTGTGGTAGTGGTACGCGCAGGAGTGGAGCGAG
GGTCAGGTGCGGGGCGGGATGGGGAGGCTAAGGAGGTCCGAATCTTGATG
GTGCAACATGTCCGTGTTCAAGTTTCTTCACTGAACAAGCATAGCCCTAA
ACAAGCTCCACAGGCAATGACAAGAATGAGGAGAAAAAGAAAAGGCCACC
CCTTTCGCTGATGCTGCCTGCGTGGGTGATGGTGGGTTGGTCAGGACCTA
TATGAGCGGGGTTTTGGTGTTGTTGACTGCAACTGCGAGAAGGCGCCATA
GGCCTCCCGTTTCATTCCAGTGGCCACCCCGTGCACAAAACAACACACAA
ACTACAGGCTTCGCGCAGACACGCAATATTATCGCCCGGCTTGTGGCGGT
CAGGGCCCGGCGGTTTCCTGAATGTCTTTGAGTGAGCTGATCATATGCTC
TAGACCTGCTGTACCATCACATCGAGGATCTCCTTATCCTCCCTGTCCCT
GCCCTCGTAGAGGTGGCCATGACTGTGTCGGTTCAGCACACACTCTTGAC
TTACCTTCACCCACGTGCTCGATCCTATGTCTTGCCACCGGCAGCCCCGT
CAAGGAGGACCCCTCATCTTCC
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Coding sequence (CDS) from alignment at scaffold_1:120175..121696+

>mRNA_1258 ID=mRNA_1258|Name=jgi.p|Nanoce1779_2|571510|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_1:120175..121696+ (Nannochloropsis oceanica)
ATGTGTACGCTTACATATCGGATCGCACCCCTTTCTCTCATACCTTCACT
TACCTCCTCCAATTCATTCCCCTGCGTCCGAGCCGCCTTGAGACTTTGGA
GTAGCGGAGGGTCGTGGAAAAATGGGAATGAAATCCCCTCAATGGCCGAT
TCGAGGAAGAAAACACGCCATTCGACCACATCGCTACCTCCTCCCATAAA
TTTACTCAGTGTTGAAGCTGCTGTGGTAGTGGTACGCGCAGGAGTGGAGC
GAGGGTCAGGTGCGGGGCGGGATGGGGAGGCTAAGGAGGTCCGAATCTTG
ATGGTGCAACATGTCCGTGTTCAAGTTTCTTCACTGAACAAGCATAGCCC
TAAACAAGCTCCACAGGCAATGACAAGAATGAGGAGAAAAAGAAAAGGCC
ACCCCTTTCGCTGA
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Synonyms
Publications