jgi.p|Nanoce1779_2|571500, mRNA_1256 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571500
Unique Name	mRNA_1256
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3323
Alignment location	scaffold_1:115493..118815 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571586
Track	FilteredModels2
ProteinId	571500

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:115493..118815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571500	gene_1256	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571500	mRNA_1256-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1256	CDS_1256	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:115493..118815+
coding sequence from alignment at scaffold_1:115493..118815+

mRNA sequence

>mRNA_1256 ID=mRNA_1256|Name=jgi.p|Nanoce1779_2|571500|organism=Nannochloropsis oceanica|type=mRNA|length=3323bp
CGCGTGCCCAGTTCCGCTCCTCTTTGACGAGCGAGTAGGATGGGCCAGCA
CTCCAAATCCCCTCTGTTTATGAGGTGGAGAGAGGGAAGGGAGGGTGATT
ATGGCATATCAGGCACCAACTAGCCACGGCTGAAATGGCAAGGATTAGAG
GATAGATCTCGGGCCACCGCCCAGGCCGTGCGGGGAGAGAACCAGTCATC
ATCAAACACGGGAAGATGGAAAGTTTCAGGCCGCCGACGGTAAAGCCCAT
GTGGTGTTTAAGGCCACCCGCAATAAGCTTCCTGCATGTAGGGGGTCATC
TCAGAGAACTACGCAATAGCAGAAAGAGATGTCGACACTTGGCCAAAGCT
TTTTGCTCCGACATCTCTATTCCATTCTCCTTTTCACCTCGCATATTGAG
GGATGGGAGGGTGATCACGATGTTGCAAGAAATTTATTTCGCCCGGTCCC
CCCAGAATGCAGGAAAAAGCTTGAACATCTTTTGCGCCGGGTGCGAAAAT
GTGTGATATGAATTGCATGGGTTAAATTGTGAGCCAAAAAGCTTACCAAA
AAAAACTCAAGGCGAAACATTACACTTCGTGCAGGAGAAGTGTAGAGTTC
GGCCCGTTGAGGGCGGCGGAACAAATGTGTGCAAGGAAAAGGTCGGTGAA
AGTCGAGAGTGTTGAGAAAGGAGGGAGCTTTCAGAGGCCAGCAGGGCATC
TAGGAACCGTTTAAGCGCTAGATAGATTTTTATACATATACTGAGAAGGT
AGTCAACAATTGGGGTTGTTTGCGGCTCTGCAAAGCGCGCATCAAGGCTC
CGGTGTGAGAAGGAAAAAAAAACATCATCGGCGCGTGGATGCGTGATGGA
TACTCTAGTACTTCCCCGGCTTGGGAATAAATGATGGGAAAGTAAAAGCA
AAACAAGTTTAAACCCATACAAAACAAGATTCCACCCCTATGAACTTGAT
ATGTAACCTACAGTCAGAGATATTGTACTCCGTGTTGCGGTCTGTATAAT
TTTAGAGACGGACAAGTAGGGGACAGAAGGGATCGCGGCCCCTCGGCGCT
TCGAGTTTACGCTGATGACACGTCACTCTTGACAAGCCGAAACGACATTA
AGGACTCGAATTGTTCTGGTTGTTTCAGAGAATGTACCCACCCACATGGA
TGATAATCAACATGCTCGTTTATATTGATCTCCATCCTTGTTAACATACA
TCCTTAGTGTCAGGAGATCGTGGGCTCGGGTGAGGCATGTCAGACGTGGG
TGCCATAATTGCCTCGTCGGGATGCGCCGAGGTACGTCTTGGTGCCTTGG
CTTGGGTTTGTTCGCTCGATCGATAGCATGGGTGGTAGAGAGCGGATCTG
TGCCCATTCAGGTTGTCACCTCCCCCTGCGATTTAGAGGGTGGGGGCGGA
ATGACACGTGGTGTCTCCCCCATGGCTTGCTCTATGATCACGTTTGTGCC
TGTGCCAGTGTGCGACCTGGGCACAAGGAAGGGCACATTTGCTACCCCAA
AGAGATGGCAATGAGATAGGGGTGGAGTTGGGCTCTTCTTCCCCATACCA
ATTAGTCGGTCAAGATCACCCATACCGCAGAACAACTCCACCCATCCGCC
ACGCTTGTACAGGAGTATTTTGCCCTGGAGGACTGTTTGGGGGAGCATGA
CCGTGATTTCCGACAGTGCAAGACTACGATGGACATGCTGAAGAAATGTA
GCAAGGAACAACGGCTCAAGAAGGTGCAGGCCGCAGCGGCACTGGCGGCT
GGTGGCAAACCTGCTCTTGCTGTAGGCAAGCAGCAGAAATGAGGCTTTCT
CTATTGTGGAATAGTAAATTTGACATCTTGGTCGGGGCAAGAGCGCTAGC
ATGCGACTAGGATTAGTAGGGCCTTACACCTTTCTTTCTCCACGGCCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACAGCACTAGT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCTGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAGGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGCAAAAGCAGGAGCAGC
AGCAGATACAGAAAGCGCAGCAGTTGCCGCAGCGGCAAGATGGCAGCGAC
AGCAGCGAGGTACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGACGTC
CTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCTGAT
TGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCTCCT
CTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGTTGC
GGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACACTG
TCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTCTCG
CGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCCGCA
CGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCGTCG
ACCGAGGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGTTGG
TGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTGACA
AACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTTTAG
GGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTGCGA
CGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTATTG
GGGGGAGGAAATGGAGAAGGTTTATACGACGTGCTGCATGAAGAGGAGGG
GGGGCAGTTGGCGACAAGGGGAATGGCGGTGCCTGCATCGTTTGTAGTGG
CGCGCCGAAGAAATAATTAACGATGGAAGAAATATACGTTGGTTGAAAAA
CGGACAGAGAAAGAGCAACGGCTACATATACAGCAGTCGTACAGCAGTCA
AGAGCAATGACTACATATACAGCAGTCTTAAAAAAAATAAAGGGAAAGAA
CAAAATATAAGGCACTACTTTGA

protein sequence of jgi.p|Nanoce1779_2|571500

>mRNA_1256-protein ID=mRNA_1256-protein|Name=jgi.p|Nanoce1779_2|571500|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRLGLVGPYTFLSPRPATSSSSLRRVVRLFHNHQQQASIDKEDEDHHSTS
LPPQDSYHARLVAQGHRPPLVLDVSPREMFARHQQQLRRLPNILAVSVPL
AELSSRLYELPPPHEAVLEVGGQGKADVGIAKHLLESAGWRCNVAFQDHG
AELDLYVTAAAAKAGAAADTESAAVAAAARWQRQQRGTSIAVMRDRAGDV
LHLRPNPFLHMAALELIDWKALFLSSSASSSPSSFSSAFSSPLVMIDLGC
GSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLAA
RGGVDNILECVRMDLRRPRVSKDLLERQPKPSLVHAARFLERRLLVEWLT
NPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRVL
GGGNGEGLYDVLHEEEGGQLATRGMAVPASFVVARRRNN*

mRNA from alignment at scaffold_1:115493..118815+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1256 ID=mRNA_1256|Name=jgi.p|Nanoce1779_2|571500|organism=Nannochloropsis oceanica|type=mRNA|length=3323bp|location=Sequence derived from alignment at scaffold_1:115493..118815+ (Nannochloropsis oceanica)
CGCGTGCCCAGTTCCGCTCCTCTTTGACGAGCGAGTAGGATGGGCCAGCA
CTCCAAATCCCCTCTGTTTATGAGGTGGAGAGAGGGAAGGGAGGGTGATT
ATGGCATATCAGGCACCAACTAGCCACGGCTGAAATGGCAAGGATTAGAG
GATAGATCTCGGGCCACCGCCCAGGCCGTGCGGGGAGAGAACCAGTCATC
ATCAAACACGGGAAGATGGAAAGTTTCAGGCCGCCGACGGTAAAGCCCAT
GTGGTGTTTAAGGCCACCCGCAATAAGCTTCCTGCATGTAGGGGGTCATC
TCAGAGAACTACGCAATAGCAGAAAGAGATGTCGACACTTGGCCAAAGCT
TTTTGCTCCGACATCTCTATTCCATTCTCCTTTTCACCTCGCATATTGAG
GGATGGGAGGGTGATCACGATGTTGCAAGAAATTTATTTCGCCCGGTCCC
CCCAGAATGCAGGAAAAAGCTTGAACATCTTTTGCGCCGGGTGCGAAAAT
GTGTGATATGAATTGCATGGGTTAAATTGTGAGCCAAAAAGCTTACCAAA
AAAAACTCAAGGCGAAACATTACACTTCGTGCAGGAGAAGTGTAGAGTTC
GGCCCGTTGAGGGCGGCGGAACAAATGTGTGCAAGGAAAAGGTCGGTGAA
AGTCGAGAGTGTTGAGAAAGGAGGGAGCTTTCAGAGGCCAGCAGGGCATC
TAGGAACCGTTTAAGCGCTAGATAGATTTTTATACATATACTGAGAAGGT
AGTCAACAATTGGGGTTGTTTGCGGCTCTGCAAAGCGCGCATCAAGGCTC
CGGTGTGAGAAGGAAAAAAAAACATCATCGGCGCGTGGATGCGTGATGGA
TACTCTAGTACTTCCCCGGCTTGGGAATAAATGATGGGAAAGTAAAAGCA
AAACAAGTTTAAACCCATACAAAACAAGATTCCACCCCTATGAACTTGAT
ATGTAACCTACAGTCAGAGATATTGTACTCCGTGTTGCGGTCTGTATAAT
TTTAGAGACGGACAAGTAGGGGACAGAAGGGATCGCGGCCCCTCGGCGCT
TCGAGTTTACGCTGATGACACGTCACTCTTGACAAGCCGAAACGACATTA
AGGACTCGAATTGTTCTGGTTGTTTCAGAGAATGTACCCACCCACATGGA
TGATAATCAACATGCTCGTTTATATTGATCTCCATCCTTGTTAACATACA
TCCTTAGTGTCAGGAGATCGTGGGCTCGGGTGAGGCATGTCAGACGTGGG
TGCCATAATTGCCTCGTCGGGATGCGCCGAGGTACGTCTTGGTGCCTTGG
CTTGGGTTTGTTCGCTCGATCGATAGCATGGGTGGTAGAGAGCGGATCTG
TGCCCATTCAGGTTGTCACCTCCCCCTGCGATTTAGAGGGTGGGGGCGGA
ATGACACGTGGTGTCTCCCCCATGGCTTGCTCTATGATCACGTTTGTGCC
TGTGCCAGTGTGCGACCTGGGCACAAGGAAGGGCACATTTGCTACCCCAA
AGAGATGGCAATGAGATAGGGGTGGAGTTGGGCTCTTCTTCCCCATACCA
ATTAGTCGGTCAAGATCACCCATACCGCAGAACAACTCCACCCATCCGCC
ACGCTTGTACAGGAGTATTTTGCCCTGGAGGACTGTTTGGGGGAGCATGA
CCGTGATTTCCGACAGTGCAAGACTACGATGGACATGCTGAAGAAATGTA
GCAAGGAACAACGGCTCAAGAAGGTGCAGGCCGCAGCGGCACTGGCGGCT
GGTGGCAAACCTGCTCTTGCTGTAGGCAAGCAGCAGAAATGAGGCTTTCT
CTATTGTGGAATAGTAAATTTGACATCTTGGTCGGGGCAAGAGCGCTAGC
ATGCGACTAGGATTAGTAGGGCCTTACACCTTTCTTTCTCCACGGCCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACAGCACTAGT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCTGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAGGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGCAAAAGCAGGAGCAGC
AGCAGATACAGAAAGCGCAGCAGTTGCCGCAGCGGCAAGATGGCAGCGAC
AGCAGCGAGGTACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGACGTC
CTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCTGAT
TGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCTCCT
CTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGTTGC
GGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACACTG
TCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTCTCG
CGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCCGCA
CGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCGTCG
ACCGAGGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGTTGG
TGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTGACA
AACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTTTAG
GGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTGCGA
CGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTATTG
GGGGGAGGAAATGGAGAAGGTTTATACGACGTGCTGCATGAAGAGGAGGG
GGGGCAGTTGGCGACAAGGGGAATGGCGGTGCCTGCATCGTTTGTAGTGG
CGCGCCGAAGAAATAATTAACGATGGAAGAAATATACGTTGGTTGAAAAA
CGGACAGAGAAAGAGCAACGGCTACATATACAGCAGTCGTACAGCAGTCA
AGAGCAATGACTACATATACAGCAGTCTTAAAAAAAATAAAGGGAAAGAA
CAAAATATAAGGCACTACTTTGA

Coding sequence (CDS) from alignment at scaffold_1:115493..118815+

>mRNA_1256 ID=mRNA_1256|Name=jgi.p|Nanoce1779_2|571500|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_1:115493..118815+ (Nannochloropsis oceanica)
ATGCGACTAGGATTAGTAGGGCCTTACACCTTTCTTTCTCCACGGCCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACAGCACTAGT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCTGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAGGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGCAAAAGCAGGAGCAGC
AGCAGATACAGAAAGCGCAGCAGTTGCCGCAGCGGCAAGATGGCAGCGAC
AGCAGCGAGGTACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGACGTC
CTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCTGAT
TGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCTCCT
CTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGTTGC
GGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACACTG
TCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTCTCG
CGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCCGCA
CGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCGTCG
ACCGAGGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGTTGG
TGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTGACA
AACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTTTAG
GGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTGCGA
CGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTATTG
GGGGGAGGAAATGGAGAAGGTTTATACGACGTGCTGCATGAAGAGGAGGG
GGGGCAGTTGGCGACAAGGGGAATGGCGGTGCCTGCATCGTTTGTAGTGG
CGCGCCGAAGAAATAATTAA

Synonyms

Publications