|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 1433 |
| Track | FilteredModels2 |
| ProteinId | 1347 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:112981..115564 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1255 ID=mRNA_1255|Name=jgi.p|Nanoce1779_2|1347|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp
CATAAACAGAGGGGATTTGGAGTGCTGGCCCATCCTACTCGCTCGTCAAA
GAGGAGCGGAACTGGGCACGCGCGCAGCGGGGCGGGGCGGCGGGGAGGGG
TGTGAGATGGATGCTGTGAAGGATGGTGGGCCCCCCGGCTGGGCAATGGT
GGGGGAACTGGGGCCGGCACCCGGTTTGGAGCATCTCGAGCACTGTCGGC
TAGCGGCCACGACGTTTGGGTACATTGCATATCGGCTGCGAAAGATTGGG
CAAATTCAACACTACAAAACACTGGCCCTTCTAAACCACTCCCTCCTCTT
CCTTCACTCACTCCTCCCCTTCAACACTTCCTGTCCCCCTTTCTCCCTTC
CTCTCTCCCTCCCTCTACCCGTCCATCCATCCTCCTTCAATCACCCATCC
ACAGCCGTGCTTGGGACGTTTACTCCTTTCGTAAAAAAATCGACATCACC
TGCGGTGCTGTGGGTGCACTTTTTCGTGTTCTTGCCATGCCTATCCCAAA
GGAGATTCAGATATGCACGCAGGAACAGGTAGAGGAAGACTTGGCTCTGC
AGCACGACCGGCCGTTGGAAGATTTGTTGGCGTTACATAACATGCCGCTG
TATGTGCAGAGATTGATGGAGGAGGGGCAGAGGCAGGGAAGCGCCATGTG
TGGGTATACGTATGCGAATGGTCATTATCAATTGTGGACCGACCGGGTGT
TTGCAGAGAAGTATTTTGATGCGGTAGAGGCAAATGCCCGATTTGAGAGC
CTGGCCGTGTTGCCTTGTTATTTGTTCGGGTGTTTGATGAGTCCGAGGGA
CCGGCCGTGTTTTTATGAGTTGCTGATTGAGTACATGCTGACGGACAGTA
GGGAGGATCGGAACGTGTCTTTACAAGCCGAGGTAAAGGGGAAGGATGGA
AATGTCGAGGTGTGCTTAGTCCGTGCCAGGCACCGCGTGCTGAATGGCGG
GCAGTATATGGCGTTTGCCTTGAGCATCTTACCCCTCCCCCATGGCACGC
AAGACATGTGTACCGTCCGCCACCTTCGTAAGTGTAATGCAGGGAATGTC
GAGCACATTCATCTTGCAGCTTCAGAGAAGGAGAGGGAGAAGGACCGAAT
GGCCGCAGCCTCGCCAAGTGCTGGTCGACCGGTATCAACTTACAAGGGGA
GGACAGGCAGGGAGGAAGGAGAGGTAGGGGAGGGGAGTGGCACGGACAGG
ACAGGGGGGGAGATGGGTGGAAAAGGAGGTAAGGGAGGAGGAGGAGTTGA
ATCTCGCCCGCGGGGTGGTGGGCGTCGGCGGGGACAAGGTGGACACAGAG
TGTCCCTCCCTGCAGAACCAGATCCGTACTCTTCAGAGTTGATCGGCGCT
TCGTCTGCTTATGACGTGCCCCACGACCCGAAGCAGCAGCAACAGCAGCA
TCAGCAGCAGCAACAACAACAACAACAGCAACAACACCAACAGCTGCTGG
GCTGGGGAGAAGCGCCGTGGATGAGTGCACCTGGAGGAGGAAAAGAGGGA
GGGGGAGGGGGGAGAGGGGGTTATCCTTATCAATACCCCAGGAAAGCTAA
CCTTTTCTCTGACCCCGGCCCACAGCCGCCTGCTTTGCTTTTCCAATCAC
ATGATCAACAGACGCGAGGATCCTCCTATAATCCGGACTACCATATCTAC
CTTCAGCAGGAGGAGGAGGAAAAGAAGCAGCAGCAGCAGCAGCACGTCCA
CCACAGCAACAGCAGTCCCCCTATAGCAGCTATCCTTCCCTTCCCTCCCA
CCCTCACCAATCCAGCGCCACATTCGGGGTAGTTGTGGCCGGCAGTGGGG
AAGGAGAAGGAGGGGGGGGAGGAGAAGGAGGAAGAAGAGAAGGAGGAAAG
GGGGGAGGAGCAATGCAACCACCTCGTGATCCACGCTTGATGAGTCATTT
GAGCTCAGGTGCTGATGCGGACGCCGGAGGGAGGGGCATTTTCGATCCCT
CCACAGGTCCGGCTGGGCCGGCCAGGGGGGAGGCTCCTCAACGACAGATG
ATGCCTTTGCACGGTCCTCCGCCGCAAGAGCAGCAACAGTATCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAATACCAGCGGCAGCAGCAGCAACAGC
TGCAGCGACAGCAAGAGGAGGAAGAGAAGGAGGAGCAGCAGCAGCAGCAG
CAACAGGAGGAGAGAGCGGAAGAGGATGACAATATGTTTGCGCATACGGC
GGCTCTCAATGAGCTGGCGGAGTATTTGCGCACGGAAAGAAGCCCGGAAG
AGGAAGGAGGGGCAGA back to topprotein sequence of jgi.p|Nanoce1779_2|1347 >mRNA_1255-protein ID=mRNA_1255-protein|Name=jgi.p|Nanoce1779_2|1347|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MPIPKEIQICTQEQVEEDLALQHDRPLEDLLALHNMPLYVQRLMEEGQRQ
GSAMCGYTYANGHYQLWTDRVFAEKYFDAVEANARFESLAVLPCYLFGCL
MSPRDRPCFYELLIEYMLTDSREDRNVSLQAEVKGKDGNVEVCLVRARHR
VLNGGQYMAFALSILPLPHGTQDMCTVRHLRKCNAGNVEHIHLAASEKER
EKDRMAAASPSAGRPVSTYKGRTGREEGEVGEGSGTDRTGGEMGGKGGKG
GGGVESRPRGGGRRRGQGGHRVSLPAEPDPYSSELIGASSAYDVPHDPKQ
QQQQHQQQQQQQQQQQHQQLLGWGEAPWMSAPGGGKEGGGGGRGGYPYQY
PRKANLFSDPGPQPPALLFQSHDQQTRGSSYNPDYHIYLQQEEEEKKQQQ
QQHVHHSNSSPPIAAILPFPPTLTNPAPHSG* back to topmRNA from alignment at scaffold_1:112981..115564- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1255 ID=mRNA_1255|Name=jgi.p|Nanoce1779_2|1347|organism=Nannochloropsis oceanica|type=mRNA|length=2584bp|location=Sequence derived from alignment at scaffold_1:112981..115564- (Nannochloropsis oceanica)
CATAAACAGAGGGGATTTGGAGTGCTGGCCCATCCTACTCGCTCGTCAAA
GAGGAGCGGAACTGGGCACGCGCGCAGCGGGGCGGGGCGGCGGGGAGGGG
TGTGAGATGGATGCTGTGAAGGATGGTGGGCCCCCCGGCTGGGCAATGGT
GGGGGAACTGGGGCCGGCACCCGGTTTGGAGCATCTCGAGCACTGTCGGC
TAGCGGCCACGACGTTTGGGTACATTGCATATCGGCTGCGAAAGATTGGG
CAAATTCAACACTACAAAACACTGGCCCTTCTGTAAGTCGGTGAAGAGGG
GGATGGGGTTGTCTGCGGTTTAATACAGTAATTATTATACTCTCTCTTCT
CTCCGAGCGGGATTACGGATTGGGGACAGACGGTCTTGCTTTGTGCCTGC
TGCGGCACAGTGCTCAGCACTGATGTCCTCGATAAATTTCCCCCAACATG
TCATACCAACACTGCGCTTGCTCCTCCCGTCCTTCCACAACCAGAAACCA
CTCCCTCCTCTTCCTTCACTCACTCCTCCCCTTCAACACTTCCTGTCCCC
CTTTCTCCCTTCCTCTCTCCCTCCCTCTACCCGTCCATCCATCCTCCTTC
AATCACCCATCCACAGCCGTGCTTGGGACGTTTACTCCTTTCGTAAAAAA
ATCGACATCACCTGCGGTGCTGTGGGTGCACTTTTTCGTGTTCTTGCCAT
GCCTATCCCAAAGGAGATTCAGATATGCACGCAGGAACAGGTAGAGGAAG
ACTTGGCTCTGCAGCACGACCGGCCGTTGGAAGATTTGTTGGCGTTACAT
AACATGCCGCTGTATGTGCAGAGATTGATGGAGGAGGGGCAGAGGCAGGG
AAGCGCCATGTGTGGGTATACGTATGCGAATGGTCATTATCAATTGTGGA
CCGACCGGGTGTTTGCAGAGAAGTATTTTGATGCGGTAGAGGCAAATGCC
CGATTTGAGAGCCTGGCCGTGTTGCCTTGTTATTTGTTCGGGTGTTTGAT
GAGTCCGAGGGACCGGCCGTGTTTTTATGAGTTGCTGATTGAGTACATGC
TGACGGACAGTAGGGAGGATCGGAACGTGTCTTTACAAGCCGAGGTAAAG
GGGAAGGATGGAAATGTCGAGGTGTGCTTAGTCCGTGCCAGGCACCGCGT
GCTGAATGGCGGGCAGTATATGGCGTTTGCCTTGAGCATCTTACCCCTCC
CCCATGGCACGCAAGACATGTGTACCGTCCGCCACCTTCGTAAGTGTAAT
GCAGGGAATGTCGAGCACATTCATCTTGCAGCTTCAGAGAAGGAGAGGGA
GAAGGACCGAATGGCCGCAGCCTCGCCAAGTGCTGGTCGACCGGTATCAA
CTTACAAGGGGAGGACAGGCAGGGAGGAAGGAGAGGTAGGGGAGGGGAGT
GGCACGGACAGGACAGGGGGGGAGATGGGTGGAAAAGGAGGTAAGGGAGG
AGGAGGAGTTGAATCTCGCCCGCGGGGTGGTGGGCGTCGGCGGGGACAAG
GTGGACACAGAGTGTCCCTCCCTGCAGAACCAGATCCGTACTCTTCAGAG
TTGATCGGCGCTTCGTCTGCTTATGACGTGCCCCACGACCCGAAGCAGCA
GCAACAGCAGCATCAGCAGCAGCAACAACAACAACAACAGCAACAACACC
AACAGCTGCTGGGCTGGGGAGAAGCGCCGTGGATGAGTGCACCTGGAGGA
GGAAAAGAGGGAGGGGGAGGGGGGAGAGGGGGTTATCCTTATCAATACCC
CAGGAAAGCTAACCTTTTCTCTGACCCCGGCCCACAGCCGCCTGCTTTGC
TTTTCCAATCACATGATCAACAGACGCGAGGATCCTCCTATAATCCGGAC
TACCATATCTACCTTCAGCAGGAGGAGGAGGAAAAGAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATATCACC
ACCAACAATACTTTCATCCCCACACCCGGCAAAAGCAACATCAGCAGCAG
CAGCAGCAGCAGCGTCCACCACAGCAACAGCAGTCCCCCTATAGCAGCTA
TCCTTCCCTTCCCTCCCACCCTCACCAATCCAGCGCCACATTCGGGGTAG
TTGTGGCCGGCAGTGGGGAAGGAGAAGGAGGGGGGGGAGGAGAAGGAGGA
AGAAGAGAAGGAGGAAAGGGGGGAGGAGCAATGCAACCACCTCGTGATCC
ACGCTTGATGAGTCATTTGAGCTCAGGTGCTGATGCGGACGCCGGAGGGA
GGGGCATTTTCGATCCCTCCACAGGTCCGGCTGGGCCGGCCAGGGGGGAG
GCTCCTCAACGACAGATGATGCCTTTGCACGGTCCTCCGCCGCAAGAGCA
GCAACAGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAATACCAGC
GGCAGCAGCAGCAACAGCTGCAGCGACAGCAAGAGGAGGAAGAGAAGGAG
GAGCAGCAGCAGCAGCAGCAACAGGAGGAGAGAGCGGAAGAGGATGACAA
TATGTTTGCGCATACGGCGGCTCTCAATGAGCTGGCGGAGTATTTGCGCA
CGGAAAGAAGCCCGGAAGAGGAAGGAGGGGCAGA back to topCoding sequence (CDS) from alignment at scaffold_1:112981..115564- >mRNA_1255 ID=mRNA_1255|Name=jgi.p|Nanoce1779_2|1347|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_1:112981..115564- (Nannochloropsis oceanica)
CGTCCACCACAGCAACAGCAGTCCCCCTATAGCAGCTATCCTTCCCTTCC
CTCCCACCCTCACCAATCCAGCGCCACATTCGGGGTAGATGCCTATCCCA
AAGGAGATTCAGATATGCACGCAGGAACAGGTAGAGGAAGACTTGGCTCT
GCAGCACGACCGGCCGTTGGAAGATTTGTTGGCGTTACATAACATGCCGC
TGTATGTGCAGAGATTGATGGAGGAGGGGCAGAGGCAGGGAAGCGCCATG
TGTGGGTATACGTATGCGAATGGTCATTATCAATTGTGGACCGACCGGGT
GTTTGCAGAGAAGTATTTTGATGCGGTAGAGGCAAATGCCCGATTTGAGA
GCCTGGCCGTGTTGCCTTGTTATTTGTTCGGGTGTTTGATGAGTCCGAGG
GACCGGCCGTGTTTTTATGAGTTGCTGATTGAGTACATGCTGACGGACAG
TAGGGAGGATCGGAACGTGTCTTTACAAGCCGAGGTAAAGGGGAAGGATG
GAAATGTCGAGGTGTGCTTAGTCCGTGCCAGGCACCGCGTGCTGAATGGC
GGGCAGTATATGGCGTTTGCCTTGAGCATCTTACCCCTCCCCCATGGCAC
GCAAGACATGTGTACCGTCCGCCACCTTCGTAAGTGTAATGCAGGGAATG
TCGAGCACATTCATCTTGCAGCTTCAGAGAAGGAGAGGGAGAAGGACCGA
ATGGCCGCAGCCTCGCCAAGTGCTGGTCGACCGGTATCAACTTACAAGGG
GAGGACAGGCAGGGAGGAAGGAGAGGTAGGGGAGGGGAGTGGCACGGACA
GGACAGGGGGGGAGATGGGTGGAAAAGGAGGTAAGGGAGGAGGAGGAGTT
GAATCTCGCCCGCGGGGTGGTGGGCGTCGGCGGGGACAAGGTGGACACAG
AGTGTCCCTCCCTGCAGAACCAGATCCGTACTCTTCAGAGTTGATCGGCG
CTTCGTCTGCTTATGACGTGCCCCACGACCCGAAGCAGCAGCAACAGCAG
CATCAGCAGCAGCAACAACAACAACAACAGCAACAACACCAACAGCTGCT
GGGCTGGGGAGAAGCGCCGTGGATGAGTGCACCTGGAGGAGGAAAAGAGG
GAGGGGGAGGGGGGAGAGGGGGTTATCCTTATCAATACCCCAGGAAAGCT
AACCTTTTCTCTGACCCCGGCCCACAGCCGCCTGCTTTGCTTTTCCAATC
ACATGATCAACAGACGCGAGGATCCTCCTATAATCCGGACTACCATATCT
ACCTTCAGCAGGAGGAGGAGGAAAAGAAGCAGCAGCAGCAGCAGCACGTC
CACCACAGCAACAGCAGTCCCCCTATAGCAGCTATCCTTCCCTTCCCTCC
CACCCTCACCAATCCAGCGCCACATTCGGGGTAGATGCCTATCCCAAAGG
AGATTCAGATATGCACGCAGGAACAGGTAGAGGAAGACTTGGCTCTGCAG
CACGACCGGCCGTTGGAAGATTTGTTGGCGTTACATAACATGCCGCTGTA
TGTGCAGAGATTGATGGAGGAGGGGCAGAGGCAGGGAAGCGCCATGTGTG
GGTATACGTATGCGAATGGTCATTATCAATTGTGGACCGACCGGGTGTTT
GCAGAGAAGTATTTTGATGCGGTAGAGGCAAATGCCCGATTTGAGAGCCT
GGCCGTGTTGCCTTGTTATTTGTTCGGGTGTTTGATGAGTCCGAGGGACC
GGCCGTGTTTTTATGAGTTGCTGATTGAGTACATGCTGACGGACAGTAGG
GAGGATCGGAACGTGTCTTTACAAGCCGAGGTAAAGGGGAAGGATGGAAA
TGTCGAGGTGTGCTTAGTCCGTGCCAGGCACCGCGTGCTGAATGGCGGGC
AGTATATGGCGTTTGCCTTGAGCATCTTACCCCTCCCCCATGGCACGCAA
GACATGTGTACCGTCCGCCACCTTCGTAAGTGTAATGCAGGGAATGTCGA
GCACATTCATCTTGCAGCTTCAGAGAAGGAGAGGGAGAAGGACCGAATGG
CCGCAGCCTCGCCAAGTGCTGGTCGACCGGTATCAACTTACAAGGGGAGG
ACAGGCAGGGAGGAAGGAGAGGTAGGGGAGGGGAGTGGCACGGACAGGAC
AGGGGGGGAGATGGGTGGAAAAGGAGGTAAGGGAGGAGGAGGAGTTGAAT
CTCGCCCGCGGGGTGGTGGGCGTCGGCGGGGACAAGGTGGACACAGAGTG
TCCCTCCCTGCAGAACCAGATCCGTACTCTTCAGAGTTGATCGGCGCTTC
GTCTGCTTATGACGTGCCCCACGACCCGAAGCAGCAGCAACAGCAGCATC
AGCAGCAGCAACAACAACAACAACAGCAACAACACCAACAGCTGCTGGGC
TGGGGAGAAGCGCCGTGGATGAGTGCACCTGGAGGAGGAAAAGAGGGAGG
GGGAGGGGGGAGAGGGGGTTATCCTTATCAATACCCCAGGAAAGCTAACC
TTTTCTCTGACCCCGGCCCACAGCCGCCTGCTTTGCTTTTCCAATCACAT
GATCAACAGACGCGAGGATCCTCCTATAATCCGGACTACCATATCTACCT
TCAGCAGGAGGAGGAGGAAAAGAAGCAGCAGCAGCAGCAGCA back to top
|