jgi.p|Nanoce1779_2|571496, mRNA_1254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571496
Unique NamemRNA_1254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length311
Alignment locationscaffold_1:112645..112955 +

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Properties
Property NameValue
TranscriptId571582
TrackFilteredModels2
ProteinId571496
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:112645..112955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571496gene_1254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571496mRNA_1254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1254CDS_1254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1254 ID=mRNA_1254|Name=jgi.p|Nanoce1779_2|571496|organism=Nannochloropsis oceanica|type=mRNA|length=311bp
TTTTTTTGCTTTTTATGATAGAGCACACCGCTTCGTATACACCACTTTAC
CTCTCTCTTCCTCCCTGCGTATCTCTCCGTCTATGCCTGTTTCTCTTCCC
AAAACGTCTTCCTTCGTCTCCTTTATATGGTTACTCTTTCACTTTTCGAC
CTCTCTTCATCCTCTCCTCCCTCACTTTTTGTTTTGTCTTGACTCTCCTC
TCTCTTTCTCCGTGTAATTTAATCCAAGGGTAAAGCGTCCGGGAGAATTG
AGCGAAGAGCAAGACGGATAGCGACTGCCAGGCGACTCCCCCTACCTGCC
CCCCTCTATTG
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protein sequence of jgi.p|Nanoce1779_2|571496

>mRNA_1254-protein ID=mRNA_1254-protein|Name=jgi.p|Nanoce1779_2|571496|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MIEHTASYTPLYLSLPPCVSLRLCLFLFPKRLPSSPLYGYSFTFRPLFIL
SSLTFCFVLTLLSLSPCNLIQG*
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mRNA from alignment at scaffold_1:112645..112955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1254 ID=mRNA_1254|Name=jgi.p|Nanoce1779_2|571496|organism=Nannochloropsis oceanica|type=mRNA|length=311bp|location=Sequence derived from alignment at scaffold_1:112645..112955+ (Nannochloropsis oceanica)
TTTTTTTGCTTTTTATGATAGAGCACACCGCTTCGTATACACCACTTTAC
CTCTCTCTTCCTCCCTGCGTATCTCTCCGTCTATGCCTGTTTCTCTTCCC
AAAACGTCTTCCTTCGTCTCCTTTATATGGTTACTCTTTCACTTTTCGAC
CTCTCTTCATCCTCTCCTCCCTCACTTTTTGTTTTGTCTTGACTCTCCTC
TCTCTTTCTCCGTGTAATTTAATCCAAGGGTAAAGCGTCCGGGAGAATTG
AGCGAAGAGCAAGACGGATAGCGACTGCCAGGCGACTCCCCCTACCTGCC
CCCCTCTATTG
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Coding sequence (CDS) from alignment at scaffold_1:112645..112955+

>mRNA_1254 ID=mRNA_1254|Name=jgi.p|Nanoce1779_2|571496|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_1:112645..112955+ (Nannochloropsis oceanica)
ATGATAGAGCACACCGCTTCGTATACACCACTTTACCTCTCTCTTCCTCC
CTGCGTATCTCTCCGTCTATGCCTGTTTCTCTTCCCAAAACGTCTTCCTT
CGTCTCCTTTATATGGTTACTCTTTCACTTTTCGACCTCTCTTCATCCTC
TCCTCCCTCACTTTTTGTTTTGTCTTGACTCTCCTCTCTCTTTCTCCGTG
TAATTTAATCCAAGGGTAA
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Synonyms
Publications