jgi.p|Nanoce1779_2|627645, mRNA_125 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627645
Unique NamemRNA_125
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length736
Alignment locationscaffold_3:330338..331879 -

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Properties
Property NameValue
TranscriptId627731
TrackFilteredModels2
ProteinId627645
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:330338..331879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627645gene_125Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627645mRNA_125-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_125CDS_125Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_125 ID=mRNA_125|Name=jgi.p|Nanoce1779_2|627645|organism=Nannochloropsis oceanica|type=mRNA|length=736bp
GGAGGAAGGGGTTGGCCATGCCCAGGACCAGCAGCAGCAGCAGCAGTTGA
AAATGAAGCAGGCAGCGGAAGAGGAGAGACAGCAACAGCATCAGCAGCAG
CAATTGGAAAAAAAACAGGCGGAGGCAGCAGGATTGCGGAAGAAATGCCG
CAATTACCTCGAGGCAATGAATGGAGTGATGGACGAGCTCGAGAGGATGA
AGAAAATGCAGCAACAGCAGCAACAAGAGCGACAACAACAAGAGCGAAAC
ACCACGAACAGCCGCAGTAGCAAAGACTTGCTTCTCGCGCGGCAGGCTCT
GGACAAGGCGGAGAAGCGGTGTCATGCGTTGGCCAAAGAAACGGAGGGAG
CCCGCCGACGGATCCAAGTCGAACAAGACAAAGCCCGCGAGTTAGAGGCG
GCGGTCTCTGAAGCAGCCGAGAGGATCGTCGCTTACGAGGAGGAGATGGA
GGGGACGAGGGTGGAAATGAGGGCGACTGCACGACAGTTACAGGAGTTGC
AGGTGACACTGAAGCAGCATCAGGAGCAAGAGCAGGAGCAGCGGCAGACG
AGGAAGGGGGGGAAAATGACGACGATGGCCATGAATGGCGGAGTTGTAAA
TGGAGGAAAAGAAGTAATGGGAGGAGGACCAGGCAAACAGGACCAGTTGA
CTGAAGTCTTAATGAGGACAGCCAAACAGCTCCAGCGGGCCACCCGCAAG
ACACACACGCTTTTTGATTCTGTTAATGAAAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|627645

>mRNA_125-protein ID=mRNA_125-protein|Name=jgi.p|Nanoce1779_2|627645|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKQAAEEERQQQHQQQQLEKKQAEAAGLRKKCRNYLEAMNGVMDELERMK
KMQQQQQQERQQQERNTTNSRSSKDLLLARQALDKAEKRCHALAKETEGA
RRRIQVEQDKARELEAAVSEAAERIVAYEEEMEGTRVEMRATARQLQELQ
VTLKQHQEQEQEQRQTRKGGKMTTMAMNGGVVNGGKEVMGGGPGKQDQLT
EVLMRTAKQLQRATRKTHTLFDSVNEK*
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mRNA from alignment at scaffold_3:330338..331879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_125 ID=mRNA_125|Name=jgi.p|Nanoce1779_2|627645|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_3:330338..331879- (Nannochloropsis oceanica)
GGAGGAAGGGGTTGGCCATGCCCAGGACCAGCAGCAGCAGCAGCAGTTGA
AAATGAAGCAGGCAGCGGAAGAGGAGAGACAGCAACAGCATCAGCAGCAG
CAATTGGAAAAAAAACAGGCGGAGGCAGCAGGATTGCGGAAGAAATGCCG
CAATTACCTCGAGGCAATGAATGGAGTGATGGACGAGCTCGAGAGGATGA
AGAAAATGCAGCAACAGCAGCAACAAGAGCGACAACAACAAGAGCGAAAC
ACCACGAACAGCCGCAGTAGCAAAGACTTGCTTCTCGCGCGGCAGGCTCT
GGACAAGGCGGAGAAGCGGTGTCATGCGTTGGCCAAAGAAACGGAGGGAG
CCCGCCGACGGATCCAAGTCGAACAAGACAAAGCCCGCGAGTTAGAGGCG
GCGGTCTCTGAAGCAGCCGAGAGGATCGTCGCTTACGAGGAGGAGATGGA
GGGGACGAGGGTGGAAATGAGGGCGACTGCACGACAGTTACAGGAGTTGC
AGGTGACACTGAAGCAGCATCAGGAGCAAGAGCAGGAGCAGCGGCAGACG
AGGAAGGGGGGGAAAATGACGACGATGGCCATGAATGGCGGAGTTGTAAA
TGGAGGAAAAGAAGTAATGGGAGGAGGACCAGGCAAACAGGACCAGTTGA
CTGAAGTCTTAATGAGGACAGCCAAACAGCTCCAGCGGGCCACCCGCAAG
ACACACACGCTTTTTGATTCTGTTAATGGTGCTAATGATGCCCCTTCTAT
AATCAACCCTTATTCTTCTGTTGCTCCATTAGCCCCTTCCTCCTCCATGT
CATCTTCCTCCTCGGCTTTACACGCCTTCCATAAATTGCGGAACCAGATT
CAACGCTCCCAGAGACAACGTCCAATTCAAATGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCAGCAGCAGCGGCAGCAGGCCACACGTGGAG
ATGGAGGAGAAAAATATGAATGGGTGGTTGATGAGTGGGTAGAGGAGGAA
GAAACGAGGGAGGAGGACGGAGGTTTGGAGGGGAAAGCGGTCACTCAGTC
GTTAAACGATATTTTGCAAAGGTGTCGTTCGTTGAAGGCGGAATTATTGA
CAGCAGTGGCTGAGGAAGAGGAGGAAGAAGGAGAAGAAGGAGAAGCAGAC
CGACGAGAAGTAACGCTAGAGCGACAGCCGCAGGAGTCGCAACCGCGACC
AAAGAGCCGGCGGAAGGGTTAGGGAGAGGAGAAAATCCAAACCCACAAAT
GTGACAAGAAGAAAATGAAAGGCTCAAAAATACCTCCCTTGGTGTGCACG
TATGTATGTATGTACGTACGTATGTATGTATGTATGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGTGTGTGTTTGTATGAG
TAAAAACGACGGAAAAGCCTCCCGATATGCAGCTGCGGCAAAGGCCCAAA
CAAGTAAAGTAAAGTACATTGACCCCCTTTAAAGAAAAGTGA
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Coding sequence (CDS) from alignment at scaffold_3:330338..331879-

>mRNA_125 ID=mRNA_125|Name=jgi.p|Nanoce1779_2|627645|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_3:330338..331879- (Nannochloropsis oceanica)
AAAAGTGAATGAAGCAGGCAGCGGAAGAGGAGAGACAGCAACAGCATCAG
CAGCAGCAATTGGAAAAAAAACAGGCGGAGGCAGCAGGATTGCGGAAGAA
ATGCCGCAATTACCTCGAGGCAATGAATGGAGTGATGGACGAGCTCGAGA
GGATGAAGAAAATGCAGCAACAGCAGCAACAAGAGCGACAACAACAAGAG
CGAAACACCACGAACAGCCGCAGTAGCAAAGACTTGCTTCTCGCGCGGCA
GGCTCTGGACAAGGCGGAGAAGCGGTGTCATGCGTTGGCCAAAGAAACGG
AGGGAGCCCGCCGACGGATCCAAGTCGAACAAGACAAAGCCCGCGAGTTA
GAGGCGGCGGTCTCTGAAGCAGCCGAGAGGATCGTCGCTTACGAGGAGGA
GATGGAGGGGACGAGGGTGGAAATGAGGGCGACTGCACGACAGTTACAGG
AGTTGCAGGTGACACTGAAGCAGCATCAGGAGCAAGAGCAGGAGCAGCGG
CAGACGAGGAAGGGGGGGAAAATGACGACGATGGCCATGAATGGCGGAGT
TGTAAATGGAGGAAAAGAAGTAATGGGAGGAGGACCAGGCAAACAGGACC
AGTTGACTGAAGTCTTAATGAGGACAGCCAAACAGCTCCAGCGGGCCACC
CGCAAGACACACACGCTTTTTGATTCTGTTAATGAAAAGTGAATGAAGCA
GGCAGCGGAAGAGGAGAGACAGCAACAGCATCAGCAGCAGCAATTGGAAA
AAAAACAGGCGGAGGCAGCAGGATTGCGGAAGAAATGCCGCAATTACCTC
GAGGCAATGAATGGAGTGATGGACGAGCTCGAGAGGATGAAGAAAATGCA
GCAACAGCAGCAACAAGAGCGACAACAACAAGAGCGAAACACCACGAACA
GCCGCAGTAGCAAAGACTTGCTTCTCGCGCGGCAGGCTCTGGACAAGGCG
GAGAAGCGGTGTCATGCGTTGGCCAAAGAAACGGAGGGAGCCCGCCGACG
GATCCAAGTCGAACAAGACAAAGCCCGCGAGTTAGAGGCGGCGGTCTCTG
AAGCAGCCGAGAGGATCGTCGCTTACGAGGAGGAGATGGAGGGGACGAGG
GTGGAAATGAGGGCGACTGCACGACAGTTACAGGAGTTGCAGGTGACACT
GAAGCAGCATCAGGAGCAAGAGCAGGAGCAGCGGCAGACGAGGAAGGGGG
GGAAAATGACGACGATGGCCATGAATGGCGGAGTTGTAAATGGAGGAAAA
GAAGTAATGGGAGGAGGACCAGGCAAACAGGACCAGTTGACTGAAGTCTT
AATGAGGACAGCCAAACAGCTCCAGCGGGCCACCCGCAAGACACACACGC
TTTTTGATTCTGTTAATG
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Synonyms
Publications