jgi.p|Nanoce1779_2|548831, mRNA_1249 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|548831
Unique Name	mRNA_1249
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1409
Alignment location	scaffold_1:93032..94466 +

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Properties


Property Name	Value
TranscriptId	548917
Track	FilteredModels2
ProteinId	548831

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:93032..94466 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548831	gene_1249	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548831	mRNA_1249-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1249	CDS_1249	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:93032..94466+
coding sequence from alignment at scaffold_1:93032..94466+

mRNA sequence

>mRNA_1249 ID=mRNA_1249|Name=jgi.p|Nanoce1779_2|548831|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
TCTCTTTTTGATTAATTTTTACGTGCATATTTCCTGACAAAAATATCTTT
TCGGTGTAGGCTATCTCAAAGCACCTCTTTTTTTCCTCCTTGCTCGTTCG
CCATTCCATCGCACTGTCTTTCCACTTCCTTGCATGCACACAATGCTTTT
ATCACAGCTACTTCAAGCTCTCATCCTGACACCCAATTATTGAGCTCCTA
TCAATTAAACATGCAAACATGAAAATAAACACACGGACGATGATGGGCAG
GCTGTTGAAGGCATGTGACGAGCGCCTTATGAGGCAGTACCTCGTGGAAG
GAGGGGGCTTTTTTCGTGACACCGATGCCCTAGAAGATGACGAAGGGCTC
GAAGAAAAAGGTGTTGACTTAGAATTTGTAGAAGATGGGATGGTGGAGGA
GGGGGAGTACAACTACTCTGGATTCGACGAGCTAGCCGTTCGAATGGCGG
TGCTTTCCCGTCAGACCTGCCCAGAGGACTATGCCTGTCCCGTCGCTCAC
CCCTATCACCCTCTGAACATGAGTTTGTACGATCGCACCGCTGTGTTTGG
CGTGGGGACAGCCCCGCACCTGTTTGGGAACAGCGTCATGCACCTGGACC
GGGAGCGGCTGAGACGTGTGTTGGACATCCACCGATACCGAAATATGGGC
CGGGAGCCTTCGCAGACCTTGCTGAGGGAGCAGGATTTGGGACAGGGGTC
GTTTGGGTGGGTGTTCAAGGTGGGGAAGAAGCAGCAATATTGCCAAGAGG
TGGCTGTGAAGGCGGCACCGCTCGCAAATACCTCGTGGACGGAGGAGGCT
TTCTTTGATACGGAGGGCATCGTCTGGGCAGGGGTAATGGAGATGATGGC
ATTGAAACGCGCCCTTCTGCACAACGTTTCGGCCGTTGTCAAGATTTTGG
GCGTGGCGGTAGAGGAGGGGTACCTTTTGATTGCGCTTGAATTTGCACCC
AACGGGACGATGGGCAGGCTAGTGAAGGCTTGTAACGAGCGCCTCGTGAG
GCAGTACGGCCTTCAGATGCTAAAAATCGTGGAAGATCTTAACGCAAGCG
GAATCGTCCACAGGGACATGAAGCCTGAAAACTTTCTTTTGGACGAAAGT
TGGCGAGCCGTAGCGGCTGATTTCGGCCTCGCGCACGTCAACAAGGAGGA
AGGGCACCAGAGCTGGACGGAAAGACTGTACACACGTACATATCCGACCT
GGCTTGTAGGGAAAACGATGGTTGCCTTAACGTTGAGCCATGAGCATGTA
GATTTGACCCGAGAGGTGATAATTCGCAAGCTAATTGGGTCGTCGTGGTC
ACAAGGGAGGCAGGAGGTAATGTGACAGAAGGTGGAGCGGGGGAAGCTTA
GCCACCCTACGCCCCCACCACCATTTCTTCTACCCAATCCACTTTTTCTG
GCAGCACCC

protein sequence of jgi.p|Nanoce1779_2|548831

>mRNA_1249-protein ID=mRNA_1249-protein|Name=jgi.p|Nanoce1779_2|548831|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MKINTRTMMGRLLKACDERLMRQYLVEGGGFFRDTDALEDDEGLEEKGVD
LEFVEDGMVEEGEYNYSGFDELAVRMAVLSRQTCPEDYACPVAHPYHPLN
MSLYDRTAVFGVGTAPHLFGNSVMHLDRERLRRVLDIHRYRNMGREPSQT
LLREQDLGQGSFGWVFKVGKKQQYCQEVAVKAAPLANTSWTEEAFFDTEG
IVWAGVMEMMALKRALLHNVSAVVKILGVAVEEGYLLIALEFAPNGTMGR
LVKACNERLVRQYGLQMLKIVEDLNASGIVHRDMKPENFLLDESWRAVAA
DFGLAHVNKEEGHQSWTERLYTRTYPTWLVGKTMVALTLSHEHVDLTREV
IIRKLIGSSWSQGRQEVM*

mRNA from alignment at scaffold_1:93032..94466+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1249 ID=mRNA_1249|Name=jgi.p|Nanoce1779_2|548831|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at scaffold_1:93032..94466+ (Nannochloropsis oceanica)
TCTCTTTTTGATTAATTTTTACGTGCATATTTCCTGACAAAAATATCTTT
TCGGTGTAGGCTATCTCAAAGCACCTCTTTTTTTCCTCCTTGCTCGTTCG
CCATTCCATCGCACTGTCTTTCCACTTCCTTGCATGCACACAATGCTTTT
ATCACAGCTACTTCAAGCTCTCATCCTGACACCCAATTATTGAGCTCCTA
TCAATTAAACATGCAAACATGAAAATAAACACACGGACGATGATGGGCAG
GCTGTTGAAGGCATGTGACGAGCGCCTTATGAGGCAGTACCTCGTGGAAG
GAGGGGGCTTTTTTCGTGACACCGATGCCCTAGAAGATGACGAAGGGCTC
GAAGAAAAAGGTGTTGACTTAGAATTTGTAGAAGATGGGATGGTGGAGGA
GGGGGAGTACAACTACTCTGGATTCGACGAGCTAGCCGTTCGAATGGCGG
TGCTTTCCCGTCAGACCTGCCCAGAGGACTATGCCTGTCCCGTCGCTCAC
CCCTATCACCCTCTGAACATGAGTTTGTACGATCGCACCGCTGTGTTTGG
CGTGGGGACAGCCCCGCACCTGTTTGGGAACAGCGTCATGCACCTGGACC
GGGAGCGGCTGAGACGTGTGTTGGACATCCACCGATACCGAAATATGGGC
CGGGAGCCTTCGCAGACCTTGCTGAGGGAGCAGGATTTGGGACAGGGGTC
GTTTGGGTGGGTGTTCAAGGTGGGGAAGAAGCAGCAATATTGCCAAGAGG
TGGCTGTGAAGGCGGCACCGCTCGCAAATACCTCGTGGACGGAGGAGGCT
TTCTTTGATACGGAGGGCATCGTCTGGGCAGGGGTAATGGAGATGATGGC
ATTGAAACGCGCCCTTCTGCACAACGTTTCGGCCGTTGTCAAGATTTTGG
GCGTGGCGGTAGAGGAGGGGTACCTTTTGATTGCGCTTGAATTTGCACCC
AACGGGACGATGGGCAGGCTAGTGAAGGCTTGTAACGAGCGCCTCGTGAG
GCAGTACGGCCTTCAGATGCTAAAAATCGTGGAAGATCTTAACGCAAGCG
GAATCGTCCACAGGGACATGAAGCCTGAAAACTTTCTTTTGGACGAAAGT
TGGCGAGCCGTAGCGGCTGATTTCGGCCTCGCGCACGTCAACAAGGAGGA
AGGACAAGGCGCGCACGGAGAGGTCGAGGGCACCAGAGCTGGACGGAAAG
ACTGTACACACGTACATATCCGACCTGGCTTGTAGGGAAAACGATGGTTG
CCTTAACGTTGAGCCATGAGCATGTAGATTTGACCCGAGAGGTGATAATT
CGCAAGCTAATTGGGTCGTCGTGGTCACAAGGGAGGCAGGAGGTAATGTG
ACAGAAGGTGGAGCGGGGGAAGCTTAGCCACCCTACGCCCCCACCACCAT
TTCTTCTACCCAATCCACTTTTTCTGGCAGCACCC

Coding sequence (CDS) from alignment at scaffold_1:93032..94466+

>mRNA_1249 ID=mRNA_1249|Name=jgi.p|Nanoce1779_2|548831|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_1:93032..94466+ (Nannochloropsis oceanica)
ATGAAAATAAACACACGGACGATGATGGGCAGGCTGTTGAAGGCATGTGA
CGAGCGCCTTATGAGGCAGTACCTCGTGGAAGGAGGGGGCTTTTTTCGTG
ACACCGATGCCCTAGAAGATGACGAAGGGCTCGAAGAAAAAGGTGTTGAC
TTAGAATTTGTAGAAGATGGGATGGTGGAGGAGGGGGAGTACAACTACTC
TGGATTCGACGAGCTAGCCGTTCGAATGGCGGTGCTTTCCCGTCAGACCT
GCCCAGAGGACTATGCCTGTCCCGTCGCTCACCCCTATCACCCTCTGAAC
ATGAGTTTGTACGATCGCACCGCTGTGTTTGGCGTGGGGACAGCCCCGCA
CCTGTTTGGGAACAGCGTCATGCACCTGGACCGGGAGCGGCTGAGACGTG
TGTTGGACATCCACCGATACCGAAATATGGGCCGGGAGCCTTCGCAGACC
TTGCTGAGGGAGCAGGATTTGGGACAGGGGTCGTTTGGGTGGGTGTTCAA
GGTGGGGAAGAAGCAGCAATATTGCCAAGAGGTGGCTGTGAAGGCGGCAC
CGCTCGCAAATACCTCGTGGACGGAGGAGGCTTTCTTTGATACGGAGGGC
ATCGTCTGGGCAGGGGTAATGGAGATGATGGCATTGAAACGCGCCCTTCT
GCACAACGTTTCGGCCGTTGTCAAGATTTTGGGCGTGGCGGTAGAGGAGG
GGTACCTTTTGATTGCGCTTGAATTTGCACCCAACGGGACGATGGGCAGG
CTAGTGAAGGCTTGTAACGAGCGCCTCGTGAGGCAGTACGGCCTTCAGAT
GCTAAAAATCGTGGAAGATCTTAACGCAAGCGGAATCGTCCACAGGGACA
TGAAGCCTGAAAACTTTCTTTTGGACGAAAGTTGGCGAGCCGTAGCGGCT
GATTTCGGCCTCGCGCACGTCAACAAGGAGGAAGGGCACCAGAGCTGGAC
GGAAAGACTGTACACACGTACATATCCGACCTGGCTTGTAGGGAAAACGA
TGGTTGCCTTAACGTTGAGCCATGAGCATGTAGATTTGACCCGAGAGGTG
ATAATTCGCAAGCTAATTGGGTCGTCGTGGTCACAAGGGAGGCAGGAGGT
AATGTGAATGAAAATAAACACACGGACGATGATGGGCAGGCTGTTGAAGG
CATGTGACGAGCGCCTTATGAGGCAGTACCTCGTGGAAGGAGGGGGCTTT
TTTCGTGACACCGATGCCCTAGAAGATGACGAAGGGCTCGAAGAAAAAGG
TGTTGACTTAGAATTTGTAGAAGATGGGATGGTGGAGGAGGGGGAGTACA
ACTACTCTGGATTCGACGAGCTAGCCGTTCGAATGGCGGTGCTTTCCCGT
CAGACCTGCCCAGAGGACTATGCCTGTCCCGTCGCTCACCCCTATCACCC
TCTGAACATGAGTTTGTACGATCGCACCGCTGTGTTTGGCGTGGGGACAG
CCCCGCACCTGTTTGGGAACAGCGTCATGCACCTGGACCGGGAGCGGCTG
AGACGTGTGTTGGACATCCACCGATACCGAAATATGGGCCGGGAGCCTTC
GCAGACCTTGCTGAGGGAGCAGGATTTGGGACAGGGGTCGTTTGGGTGGG
TGTTCAAGGTGGGGAAGAAGCAGCAATATTGCCAAGAGGTGGCTGTGAAG
GCGGCACCGCTCGCAAATACCTCGTGGACGGAGGAGGCTTTCTTTGATAC
GGAGGGCATCGTCTGGGCAGGGGTAATGGAGATGATGGCATTGAAACGCG
CCCTTCTGCACAACGTTTCGGCCGTTGTCAAGATTTTGGGCGTGGCGGTA
GAGGAGGGGTACCTTTTGATTGCGCTTGAATTTGCACCCAACGGGACGAT
GGGCAGGCTAGTGAAGGCTTGTAACGAGCGCCTCGTGAGGCAGTACGGCC
TTCAGATGCTAAAAATCGTGGAAGATCTTAACGCAAGCGGAATCGTCCAC
AGGGACATGAAGCCTGAAAACTTTCTTTTGGACGAAAGTTGGCGAGCCGT
AGCGGCTGATTTCGGCCTCGCGCACGTCAACAAGGAGGAAGGGCACCAGA
GCTGGACGGAAAGACTGTACACACGTACATATCCGACCTGGCTTGTAGGG
AAAACGATGGTTGCCTTAACGTTGAGCCATGAGCATGTAGATTTGACCCG
AGAGGTGATAATTCGCAAGCTAATTGGGTCGTCGTGGTCACAAGGGAGGC
AGGAGGTAATGTGA

Synonyms

Publications