jgi.p|Nanoce1779_2|925, mRNA_1246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|925
Unique NamemRNA_1246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length818
Alignment locationscaffold_1:81057..82997 -

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Properties
Property NameValue
TranscriptId1011
TrackFilteredModels2
ProteinId925
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:81057..82997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|925gene_1246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|925mRNA_1246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1246CDS_1246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1246 ID=mRNA_1246|Name=jgi.p|Nanoce1779_2|925|organism=Nannochloropsis oceanica|type=mRNA|length=818bp
AGCACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGC
CCTCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTA
CCTTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGATCCAGCT
CCAAGGAGACTCCCTCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGC
TCTACACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAG
CACCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGG
ACAGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAG
TCATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCC
ACCTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCCTGTTTCGA
GCAGCCCAAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGT
CTCTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTG
CTCGACGAGGACATGTACAACGTCATCCAGAGCAAGTACGCCGCCATTGA
AGAGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGGTGGTTTGGCAT
TTGTAGCGGTAGGTTGAAATGAATTGTGGGATTGATTTGTATTAGAAAGA
ATGATTTTGGGATTGATTTGTATTAGAAAGAATGATTGTGATGAAGAGAA
TGTAGAAGAAGAAGAAGAAGGGAAAAGAAAAAGAACTCACACATCAACGA
GTGAGTGACTTGATCGCT
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protein sequence of jgi.p|Nanoce1779_2|925

>mRNA_1246-protein ID=mRNA_1246-protein|Name=jgi.p|Nanoce1779_2|925|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MKRGLLYTCCVEHNYNKLILAQHLDDVIESLFMSLMHNGQTRTMKAHYTG
ERGVRVIRPLIYTREGETKAFATSNRLPIINENCPACFEQPKERARMKKM
LSKEESLMPRMYSNLRRGIIPLLDEDMYNVIQSKYAAIEERIKHRKANKA
VGGLAFVAVG*
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mRNA from alignment at scaffold_1:81057..82997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1246 ID=mRNA_1246|Name=jgi.p|Nanoce1779_2|925|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_1:81057..82997- (Nannochloropsis oceanica)
AGCACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGC
CCTCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTA
CCTTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGGTACACCC
TCCCTCCCTCCTTCCCTTTCTCCTTCCTTTGCTTCCCTTCCCCCCTTTCC
CGCAGCCGTCATCGTCTTTTTTCCTTCTTTCTTGACTCTTCTTTCTTCTC
CCTCCTCTATCCCTCTCCCTCCCTCCCTTCCTCTTTCCCTTCCTCCTTTC
ACTTTTTCTCTTCCCTCCCTCCCCTCCCTTCACCCTCACTCCCTCCCTTC
CTCTTGTTCTCTCTCCTCTATCCCTCTCCCCCCTCCCTTCCTCTTTCCCT
CCCTCCTTTCACTTTTTCTCTTCCCTCCCTCCCCCCCCTTTCCCCCCCCT
CCCTCCCTCCCTCCCTCAGATCCAGCTCCAAGGAGACTCCCTCTGCTCTT
TCTGCAGCAGAATGAAGAGGGGCTTGCTCTACACTTGCTGTGTAGAGCAT
AATTACAATAAGCTGATCCTCGCCCAGCACCTGGACGACGTCATCGAGTC
CTTGTTCATGTCCCTCATGCACAACGGACAGGTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAGGTCGGCAGCGCCATCCACCCTGCGATCTA
CATGCCACGCGAGGAGGATCAAACTGGTCTCTTGTCCCTCCCTCCTTCCC
CTCCTCCTTCCGCAGACCCGTACGATGAAGGCGCACTACACCGGCGAGCG
TGGAGTCCGAGTCATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCA
AAGCCTTTGCCACCTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCT
GCCTGTTTCGAGCAGCCCAAGGTAAGGATGAGGCTTGGGGCCCCTCCCTC
CCTCCCTCCACTTCCCCCTACCCGCTCTTTTTTCTTCTTTCCCCCCTCCG
GTTTCTCCTTGTCCGGCCGCGTTGTCTCCTCGTCTCTCTTTTTCTCCTTG
ACCATAAATTGATTCCCCCCTCCCTGCCCCCCTCCCCCCCCTCCCTCCCT
TCCTCCCTCCCTCCCAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAG
GAGGAGTCTCTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCAT
CCCACTGCTCGACGAGGACATGTACAACGTCATCCAGGCACGTACCCTCC
CTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCCT
CCAACTGTCCGTGCACTCTGCGCGTTCTGTCCCGCTGGCCTAGACCTCCT
CATTCCCTCTCTCGTTTCCCCCCCTCGTTTCCCCCCCTCCCTCGCAGAGC
AAGTACGCCGCCATTGAAGAGCGGATCAAGCACCGGAAGGCCAACAAGGC
AGTTGTGGCTACCAAAGGAAAAAAGAAGGAGGGAGAGGGGGAGAGGGAGG
AGGGGGAGGAAGAGAAGGAGGGAGGGGAGGGGAAGGAGGTAGGGAGAGGG
GGGAGGGAGGGAGGGAGGGAGGGGACGAGGGAGGACGCGATGGGGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGATTGAAAGGGACGGGATGTGAGGGTGGGGTGTGCTTGGGAATGATG
GTGGACGAGGAGAGTGGGCAGAGGGTTTAGAGGGGGAGGGGCAGGTAAGG
AGGGAAGGAGGGTGGTTTGGCATTTGTAGCGGTAGGTTGAAATGAATTGT
GGGATTGATTTGTATTAGAAAGAATGATTTTGGGATTGATTTGTATTAGA
AAGAATGATTGTGATGAAGAGAATGTAGAAGAAGAAGAAGAAGGGAAAAG
AAAAAGAACTCACACATCAACGAGTGAGTGACTTGATCGCT
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Coding sequence (CDS) from alignment at scaffold_1:81057..82997-

>mRNA_1246 ID=mRNA_1246|Name=jgi.p|Nanoce1779_2|925|organism=Nannochloropsis oceanica|type=CDS|length=2415bp|location=Sequence derived from alignment at scaffold_1:81057..82997- (Nannochloropsis oceanica)
GGTGGTTTGGCATTTGTAGCGGTAGGTTGAAGCAAGTACGCCGCCATTGA
AGAGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGAGCGAGCCCGAA
TGAAGAAAATGCTGAGCAAGGAGGAGTCTCTCATGCCACGGATGTACTCC
AACCTCCGCCGGGGCATCATCCCACTGCTCGACGAGGACATGTACAACGT
CATCCAGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCC
GAGTCATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTT
GCCACCTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCCTGTTT
CGAGCAGCCCAAGATGAAGAGGGGCTTGCTCTACACTTGCTGTGTAGAGC
ATAATTACAATAAGCTGATCCTCGCCCAGCACCTGGACGACGTCATCGAG
TCCTTGTTCATGTCCCTCATGCACAACGGACAGGGTGGTTTGGCATTTGT
AGCGGTAGGTTGAAGCAAGTACGCCGCCATTGAAGAGCGGATCAAGCACC
GGAAGGCCAACAAGGCAGTTGAGCGAGCCCGAATGAAGAAAATGCTGAGC
AAGGAGGAGTCTCTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCAT
CATCCCACTGCTCGACGAGGACATGTACAACGTCATCCAGACCCGTACGA
TGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTCATTCGGCCCCTC
ATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCACCTCCAATCGCCT
GCCCATCATCAACGAAAATTGTCCTGCCTGTTTCGAGCAGCCCAAGATGA
AGAGGGGCTTGCTCTACACTTGCTGTGTAGAGCATAATTACAATAAGCTG
ATCCTCGCCCAGCACCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCT
CATGCACAACGGACAGGGTGGTTTGGCATTTGTAGCGGTAGGTTGAAGCA
AGTACGCCGCCATTGAAGAGCGGATCAAGCACCGGAAGGCCAACAAGGCA
GTTGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGTCTCTCAT
GCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTGCTCGACG
AGGACATGTACAACGTCATCCAGACCCGTACGATGAAGGCGCACTACACC
GGCGAGCGTGGAGTCCGAGTCATTCGGCCCCTCATCTACACCCGCGAAGG
CGAGACCAAAGCCTTTGCCACCTCCAATCGCCTGCCCATCATCAACGAAA
ATTGTCCTGCCTGTTTCGAGCAGCCCAAGATGAAGAGGGGCTTGCTCTAC
ACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCACCT
GGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGACAGG
GTGGTTTGGCATTTGTAGCGGTAGGTTGAAGCAAGTACGCCGCCATTGAA
GAGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGAGCGAGCCCGAAT
GAAGAAAATGCTGAGCAAGGAGGAGTCTCTCATGCCACGGATGTACTCCA
ACCTCCGCCGGGGCATCATCCCACTGCTCGACGAGGACATGTACAACGTC
ATCCAGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCG
AGTCATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTG
CCACCTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCCTGTTTC
GAGCAGCCCAAGATGAAGAGGGGCTTGCTCTACACTTGCTGTGTAGAGCA
TAATTACAATAAGCTGATCCTCGCCCAGCACCTGGACGACGTCATCGAGT
CCTTGTTCATGTCCCTCATGCACAACGGACAGGGTGGTTTGGCATTTGTA
GCGGTAGGTTGAAGCAAGTACGCCGCCATTGAAGAGCGGATCAAGCACCG
GAAGGCCAACAAGGCAGTTGAGCGAGCCCGAATGAAGAAAATGCTGAGCA
AGGAGGAGTCTCTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATC
ATCCCACTGCTCGACGAGGACATGTACAACGTCATCCAGACCCGTACGAT
GAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTCATTCGGCCCCTCA
TCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCACCTCCAATCGCCTG
CCCATCATCAACGAAAATTGTCCTGCCTGTTTCGAGCAGCCCAAGATGAA
GAGGGGCTTGCTCTACACTTGCTGTGTAGAGCATAATTACAATAAGCTGA
TCCTCGCCCAGCACCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTC
ATGCACAACGGACAG
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Synonyms
Publications