jgi.p|Nanoce1779_2|571464, mRNA_1245 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571464
Unique NamemRNA_1245
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_1:79700..82363 +

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Properties
Property NameValue
TranscriptId571550
TrackFilteredModels2
ProteinId571464
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:79700..82363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571464gene_1245Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571464mRNA_1245-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1245CDS_1245Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1245 ID=mRNA_1245|Name=jgi.p|Nanoce1779_2|571464|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
TCTTTAGACTCCTTTATATCAAGGTAAATTTGCGGACAAGGGAAGGGGTG
TGATAGTAATGATGTCTTTGTGCGACCCTACTCAAACGGCGGACGGCAAT
CTCTCTCCTATTCCTTCTGAACGCCCACCACACAACCTCGTACACACAGC
CCTCCTTCTTGCTCCTCCTCCTCTCCCAATTCCGTCACCGGCAGCATCAC
CGCAATGAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAGCTG
CACGGCTCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCTCCTCCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCCCCA
CCTTACGGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGCCCC
CTCGGCAAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTATCTT
GACTCGTCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGCCCG
TGCCTTCACCACCAATCCCGCTAACTTCAAGGTGACCATGCAGGTGTCGA
TGAAGGACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTTACGCTGCCTG
GTGGGCAGCCGTTACAACCCTGGCCGTAGAGACGTTACGCTGGTTTCAAA
TCGTTTCATGAATCGTGACCACAACAAGCAGTACCTCATCTACTTGCTCG
AGAACCTCGTCAGTGAGGCTCAGGGGAAAGGGAACGCCAACGCCAGCGTG
TGAGAGAGGAGAGGGAGGGAGGGAAAGAAGAAGTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|571464

>mRNA_1245-protein ID=mRNA_1245-protein|Name=jgi.p|Nanoce1779_2|571464|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSIRCYSSVSCRATAARLMTSSSSSSSSSSSSSPPSGFWGGLPPGVTPHL
TDNDSSPSSSVPLLPPRQVPDAVLRFTTVAYLDSSAYIPYPHKDGIDARA
FTTNPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNR
FMNRDHNKQYLIYLLENLVSEAQGKGNANASV*
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mRNA from alignment at scaffold_1:79700..82363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1245 ID=mRNA_1245|Name=jgi.p|Nanoce1779_2|571464|organism=Nannochloropsis oceanica|type=mRNA|length=2664bp|location=Sequence derived from alignment at scaffold_1:79700..82363+ (Nannochloropsis oceanica)
TCTTTAGACTCCTTTATATCAAGGTAAATTTGCGGACAAGGGAAGGGGTG
TGATAGTAATGATGTCTTTGTGCGACCCTACTCAAACGGCGGACGGCAAT
CTCTCTCCTATTCCTTCTGAACGCCCACCACACAACCTCGTACACACAGC
CCTCCTTCTTGCTCCTCCTCCTCTCCCAATTCCGTCACCGGCAGCATCAC
CGCAATGAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAGCTG
CACGGCTCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCTCCTCCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCCCCA
CCTTACGGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGCCCC
CTCGGCAAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTATCTT
GACTCGTCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGCCCG
TGCCTTCACCACCAATCCCGCTAACTTCAAGGTAGCGGTCTTTTGATTTT
TAATTGCAATTTTCAATTGTGGTGTTGCTGTGCCAAGATCTTGTGGGGGT
GGGAGAGAGAGTGGCGTGGGATGTTTCTGCGAATTGTCTGCGCATTTGCA
TCCAACCGTTTCCCACCCTCCCTCTTTCCCTCTCTTCTTTCTCTGTGGTC
ACTCACCTCTTTCCCTCCCCAATTTCCTCTCGCCCTCCCTTCATGCCTCA
GGTGACCATGCAGGTGTCGATGAAGGACCTGGGCCTCTCGGAACGGGAGC
AAAAACGCTTACGCTGCCTGGTACGTATGCTAGTGCTTTCTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTCCCTGTCTCTTTTTTGTT
CCTTCGTCATAACTTCACGCTATTTTCGAACTTGCGCTCACCCTTCTGTC
CTTCCTTCCTCCCCCTACTCCTCCTCACAGGTGGGCAGCCGTTACAACCC
TGGCCGTAGAGACGTTACGCTGGTTTCAAATCGTTTCATGAATCGTGACC
ACAACAAGCAGTACCTCATCTACTTGCTCGAGAACCTCGTCAGTGAGGCT
CAGGGGAAAGGGAACGCCAACGCCAGCGTGTGAGAGAGGAGAGGGAGGGA
GGGAAAGAAGAAGGGAGGGAGGGCGGGGTGTGCGGTGCATTGGGAAACAA
TAGGAGGGGGTAAGGTACACGAATCGAGGAGAACGGCCACGACCAAATTT
AAGACGAAGAAGAAAATCAACAATAAGTACAAACACAACCTCAAGAAGAT
GATGACGAAGAAGCGAGGAACATCCAAGCAGTCAGGGTGAGTGAAATCTC
AACCGAGAGCGATCAAGTCACTCACTCGTTGATGTGTGAGTTCTTTTTCT
TTTCCCTTCTTCTTCTTCTTCTACATTCTCTTCATCACAATCATTCTTTC
TAATACAAATCAATCCCAAAATCATTCTTTCTAATACAAATCAATCCCAC
AATTCATTTCAACCTACCGCTACAAATGCCAAACCACCCTCCTTCCCTCC
TTACCTGCCCCTCCCCCTCTAAACCCTCTGCCCACTCTCCTCGTCCACCA
TCATTCCCAAGCACACCCCACCCTCACATCCCGTCCCTTTCAATCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCCCCATCGCGTCCTCCCTCGTCCCCTCCCTCCCTCCCTCCCTCCCCC
CTCTCCCTACCTCCTTCCCCTCCCCTCCCTCCTTCTCTTCCTCCCCCTCC
TCCCTCTCCCCCTCTCCCTCCTTCTTTTTTCCTTTGGTAGCCACAACTGC
CTTGTTGGCCTTCCGGTGCTTGATCCGCTCTTCAATGGCGGCGTACTTGC
TCTGCGAGGGAGGGGGGGAAACGAGGGGGGGAAACGAGAGAGGGAATGAG
GAGGTCTAGGCCAGCGGGACAGAACGCGCAGAGTGCACGGACAGTTGGAG
GGAAGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGAAGGGAGGG
AGGGTACGTGCCTGGATGACGTTGTACATGTCCTCGTCGAGCAGTGGGAT
GATGCCCCGGCGGAGGTTGGAGTACATCCGTGGCATGAGAGACTCCTCCT
TGCTCAGCATTTTCTTCATTCGGGCTCGCTCCTGGGAGGGAGGGAGGAAG
GGAGGGAGGGGGGGGAGGGGGGCAGGGAGGGGGGAATCAATTTATGGTCA
AGGAGAAAAAGAGAGACGAGGAGACAACGCGGCCGGACAAGGAGAAACCG
GAGGGGGGAAAGAAGAAAAAAGAGCGGGTAGGGGGAAGTGGAGGGAGGGA
GGGAGGGGCCCCAAGCCTCATCCTTACCTTGGGCTGCTCGAAACAGGCAG
GACAATTTTCGTTGATGATGGGCAGGCGATTGGAGGTGGCAAAGGCTTTG
GTCTCGCCTTCGCGGGTGTAGATGAGGGGCCGAATGACTCGGACTCCACG
CTCGCCGGTGTAGTGCGCCTTCATCGTACGGGTCTGCGGAAGGAGGAGGG
GAAGGAGGGAGGGACAAGAGACCAGTTTGATCCTCCTCGCGTGGCATGTA
GATCGCAGGGTGGATGGCGCTGCCGACCTCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_1:79700..82363+

>mRNA_1245 ID=mRNA_1245|Name=jgi.p|Nanoce1779_2|571464|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_1:79700..82363+ (Nannochloropsis oceanica)
ATGAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAGCTGCACG
GCTCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTC
CTCCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCCCCACCTT
ACGGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCG
GCAAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTATCTTGACT
CGTCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGCCCGTGCC
TTCACCACCAATCCCGCTAACTTCAAGGTGACCATGCAGGTGTCGATGAA
GGACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTTACGCTGCCTGGTGG
GCAGCCGTTACAACCCTGGCCGTAGAGACGTTACGCTGGTTTCAAATCGT
TTCATGAATCGTGACCACAACAAGCAGTACCTCATCTACTTGCTCGAGAA
CCTCGTCAGTGAGGCTCAGGGGAAAGGGAACGCCAACGCCAGCGTGTGAA
TGAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAGCTGCACGG
CTCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTCC
TCCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCCCCACCTTA
CGGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCGG
CAAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTATCTTGACTC
GTCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGCCCGTGCCT
TCACCACCAATCCCGCTAACTTCAAGGTGACCATGCAGGTGTCGATGAAG
GACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTTACGCTGCCTGGTGGG
CAGCCGTTACAACCCTGGCCGTAGAGACGTTACGCTGGTTTCAAATCGTT
TCATGAATCGTGACCACAACAAGCAGTACCTCATCTACTTGCTCGAGAAC
CTCGTCAGTGAGGCTCAGGGGAAAGGGAACGCCAACGCCAGCGTGTGAAT
GAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAGCTGCACGGC
TCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTCCT
CCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCCCCACCTTAC
GGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCGGC
AAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTATCTTGACTCG
TCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGCCCGTGCCTT
CACCACCAATCCCGCTAACTTCAAGGTGACCATGCAGGTGTCGATGAAGG
ACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTTACGCTGCCTGGTGGGC
AGCCGTTACAACCCTGGCCGTAGAGACGTTACGCTGGTTTCAAATCGTTT
CATGAATCGTGACCACAACAAGCAGTACCTCATCTACTTGCTCGAGAACC
TCGTCAGTGAGGCTCAGGGGAAAGGGAACGCCAACGCCAGCGTGTGA
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Synonyms
Publications