jgi.p|Nanoce1779_2|772, mRNA_1243 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|772
Unique NamemRNA_1243
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length765
Alignment locationscaffold_1:75633..76636 +

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Properties
Property NameValue
TranscriptId858
TrackFilteredModels2
ProteinId772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:75633..76636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|772gene_1243Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|772mRNA_1243-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1243CDS_1243Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1243 ID=mRNA_1243|Name=jgi.p|Nanoce1779_2|772|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
GTCCTGATTTGATAGAGAGACGGACAGGCCTGAGGTGGCACACACTCCTT
CGCCGTCGTGACGAACTTCTTGTGACCGTTGCCCCACCCTCTGCGCACTT
CCTTACCCCCATTGCTCCTCCACCCAAAGTCACCCTAGCTACCCACACAC
AGTACATGCAGCATGACCACTCGACCATCGACTACTTCGTTTTACGAAAT
CCTAGGTGTCTCACCTTCGGCCTCCCCCGCCACCATTAAACGCGCCTACC
AACAAGCGGCGCTTGCCACCCACCCTGACAAAACTCGCCCGGTCCTACAG
CCCATCAGACCTATTCCGACGGGCATGGACAGTGACTCGCTCCCTACCTA
TCCCTCGTTTCTTGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCA
CCACCCGCGACGCCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAG
CAGGGAGGGGGTTTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGA
GGAAGGGGGGGAGCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGAT
GCGGGGACGGTTTCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGG
AGGGGCATAGTGGTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACA
TAGATAGCGAGTAGAGAGAGGGAGGAAGAGAGGAACAGAAGAAAAGGGAT
AGCTGTATTTGTAGTGTCTTCATTTACGTGTAAAAAGCAGAAGAAAAAAA
CATGTGACTTGACGA
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protein sequence of jgi.p|Nanoce1779_2|772

>mRNA_1243-protein ID=mRNA_1243-protein|Name=jgi.p|Nanoce1779_2|772|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MTTRPSTTSFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRP
IPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGG
FVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIV
VPCDGCSLRIRVHR*
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mRNA from alignment at scaffold_1:75633..76636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1243 ID=mRNA_1243|Name=jgi.p|Nanoce1779_2|772|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp|location=Sequence derived from alignment at scaffold_1:75633..76636+ (Nannochloropsis oceanica)
GTCCTGATTTGATAGAGAGACGGACAGGCCTGAGGTGGCACACACTCCTT
CGCCGTCGTGACGAACTTCTTGTGACCGTTGCCCCACCCTCTGCGCACTT
CCTTACCCCCATTGCTCCTCCACCCAAAGGTAACCTCCATCAGACAATCG
TCTCCAAGTCCTGCGCTGATGCGGGGATAAAATGACCAGAACGGAACTCT
CACGGCCACACGCAGTAGCTTCTCCTCTTAAACCTCCCCACCCCGAAAAC
ATCCAGTCACCCTAGCTACCCACACACAGTACATGCAGCATGACCACTCG
ACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTCACCTTCGGCCT
CCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGCTTGCCACCCAC
CCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCTATTCCGACGGG
CATGGACAGTGACTCGCTCCCTACCTAGTAAGCATAAGCTCTACGAAAAG
TACAGTGCCTCCTTTATACCGCAACCGTGTTACTGGTCATTGCATTTCCT
AAGCTCAATCCCATCCCATTTGTTTCCTCCCTTTCTTAGTCCCTCGTTTC
TTGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCGAC
GCCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGGGG
TTTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGGGG
AGCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACGGT
TTCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATAGT
GGTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAGCGAG
TAGAGAGAGGGAGGAAGAGAGGAACAGAAGAAAAGGGATAGCTGTATTTG
TAGTGTCTTCATTTACGTGTAAAAAGCAGAAGAAAAAAACATGTGACTTG
ACGA
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Coding sequence (CDS) from alignment at scaffold_1:75633..76636+

>mRNA_1243 ID=mRNA_1243|Name=jgi.p|Nanoce1779_2|772|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_1:75633..76636+ (Nannochloropsis oceanica)
ATGACCACTCGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTC
ACCTTCGGCCTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGC
TTGCCACCCACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCT
ATTCCGACGGGCATGGACAGTGACTCGCTCCCTACCTATCCCTCGTTTCT
TGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCGACG
CCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGGGGT
TTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGGGGA
GCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACGGTT
TCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATAGTG
GTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAGATGAC
CACTCGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTCACCTT
CGGCCTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGCTTGCC
ACCCACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCTATTCC
GACGGGCATGGACAGTGACTCGCTCCCTACCTATCCCTCGTTTCTTGACG
TGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCGACGCCTAC
GACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGGGGTTTCGT
CGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGGGGAGCACG
GGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACGGTTTCCGA
GTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATAGTGGTGCC
TTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAG
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Synonyms
Publications