jgi.p|Nanoce1779_2|645268, mRNA_1240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|645268
Unique Name	mRNA_1240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	723
Alignment location	scaffold_1:61386..63068 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	645354
Track	FilteredModels2
ProteinId	645268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:61386..63068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|645268	gene_1240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|645268	mRNA_1240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1240	CDS_1240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:61386..63068+
coding sequence from alignment at scaffold_1:61386..63068+

mRNA sequence

>mRNA_1240 ID=mRNA_1240|Name=jgi.p|Nanoce1779_2|645268|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGGAGGAGGGAGGGGAGGAGGAGGAGGAGGGAGGGGGGGAGGGAGAGAG
GGAGGGAGGGAGGGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCT
TGAGAGGGGCGACGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATG
TGGATGGAGGCCACGACAGCGTTAGCGAAGTTTGCGGAGCGCCTTCCATT
GGAAAAGGTGGAAAAAAAGGCACCGCGGGAGACGCGGTCTTGGCAGGAAA
TGCTGGGGGCCGTCGGGGAGGGAGGAGGGGGAGAAGGAGGAGGAGGGGAG
GAGGGGGGGGGGAGGAACGGTGCGGACTCCCTCTTCCTCATGCTTCAGGG
CGGGGAGGCCTCGCGGGCGAGTGCTCGGCATCAACTGCTGCGACTCGTCT
GTCAAGCTGTGGAGAAGGCGGAAGACGGTCAAACAGCCTACTACAGGCGA
ACGGTGCAATACCTCCATCACTTCCGCGCCGCCCTCGACCAGGCCAAACG
TTTGAAGGAGGGCCCGGGGGAGGGAGGGAGGGAGGGGGGGAATGAGTTCT
GGCGGGGAGTCCAAGAGGCAGGGTTGACACTGTGTGAGGTGGATGAGGCG
GAGGCGCGGGCTTTCCTTGAGGAGGAAGATGTAAGGAAGGAGGAGGTCGT
GGCGGTGACAGGGGAGGGGGACGAGGGGGAGCAGCGTGAGGGGGAGGAAG
AGGAGGAGTTGGAGATTGAGTAG

protein sequence of jgi.p|Nanoce1779_2|645268

>mRNA_1240-protein ID=mRNA_1240-protein|Name=jgi.p|Nanoce1779_2|645268|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MEEGGEEEEEGGGEGEREGGREERKPVKLLSSSLRGATGLPPEMEREEGM
WMEATTALAKFAERLPLEKVEKKAPRETRSWQEMLGAVGEGGGGEGGGGE
EGGGRNGADSLFLMLQGGEASRASARHQLLRLVCQAVEKAEDGQTAYYRR
TVQYLHHFRAALDQAKRLKEGPGEGGREGGNEFWRGVQEAGLTLCEVDEA
EARAFLEEEDVRKEEVVAVTGEGDEGEQREGEEEEELEIE*

mRNA from alignment at scaffold_1:61386..63068+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1240 ID=mRNA_1240|Name=jgi.p|Nanoce1779_2|645268|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at scaffold_1:61386..63068+ (Nannochloropsis oceanica)
ATGGAGGAGGGAGGGGAGGAGGAGGAGGAGGGAGGGGGGGAGGGAGAGAG
GGAGGGAGGGAGGGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCT
TGAGAGGGGCGACGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATG
TGGATGGAGGCCACGGTGAGGGAGGGAGGGAGGGAAGAAGGGAGGGAGGG
AGGGGGGGGGGAGCGTGGATTTCAGCCAATGATTTCGCATTTACCGTTTC
GACTCGTTTGGATTTACCTTTTCCTCCCTCCTTCCCTCCCTCCTTCCCTT
CCTCCCTCCCTCCCTCCCTCGTCCAGACAGCGTTAGCGAAGTTTGCGGAG
CGCCTTCCATTGGAAAAGGTGGAAAAAAAGGCACCGCGGGAGACGCGGTC
TTGGCAGGAAATGCTGGGGGCCGTCGGGGAGGGAGGAGGGGGAGAAGGAG
GAGGAGGGGAGGAGGGGGGGGGGAGGAACGGTGCGGGTAGAGGGAATGAT
GAGGGAGGGGGGGGAGGAGGAGATGAAGGAGGAGGGGGAGGAAAAGAGGG
AGGGAGGAGGAGATGCGAAGCGGCAGCGGGTGGGAGAAAGGGAGGGAGGG
GAGGAGGGGGGGGGGGGAGGAAGAGGGTGTGGCAGGAGAGGGGCAAGTGC
CGACGGTGCTGGACACGACACAACTGCAGAGTGCGTGTGGAAGGGGGGGG
TGGGGAGGAGAGAGAGAGGGAGGGAGGGAGGGAAGGAGGGGGGTACTTAG
GGTGTTGTGCTACCTACTTACATGAGAGCCAGATCCTGAGACACAATAGA
GACATCTCCACCTATGCACACGTCCACACACCCACACGACCCCACAGACT
CCCTCTTCCTCATGCTTCAGGGCGGGGAGGCCTCGCGGGCGAGTGCTCGG
CATCAACTGCTGCGACTCGTCTGTCAAGCTGTGGAGAAGTAGGTGCAAGG
GAGGGAGGGAGGGAGGGAGGGGAGAGGGGATGGAAGGACATACAAATCCG
AACGAGACCATCGATACACATTCACCTCGTCCCTCCCTCCCTTCCTCCCT
CCCTCCCTCCCTCCCCTCAAGGGCGGAAGACGGTCAAACAGCCTACTACA
GGCGAACGGTGCAATACCTCCATCACTTCCGCGCCGCCCTCGACCAGGCC
AAACGGTAGGTTCCTTCCCTCCCTCATCCCCCTCCTCCCTTCCTCCCCCT
CCCTGCCTCCCTGCCTCCCTTCCTACCTACCTCTCCTCGTTTTTCCTTTC
ATTTGTCATCCATCTTTCCCTGGGGTTGTACTTGCCGTCTCGCACTAAGA
CCTCCTTCCTTCCATCCCTCTTTCCCTCGCTTGTCTTTCCAGCCCCGCGA
GCGAATGGAACACTCTCCTCCGCAGTTTGAAGGAGGGCCCGGGGGAGGGA
GGGAGGGAGGGGGGGAATGAGTTCTGGCGGGGAGTCCAAGAGGCAGGGTT
GACACTGTGTGAGGTAAGTAAGACGAGAGAGGAGGGAGGGAAGGAGGGAG
GGCGGGCTTGGTGACTTGCGGCTGATGCACCTTATTTCCTGTGTTCAGGT
GGATGAGGCGGAGGCGCGGGCTTTCCTTGAGGAGGAAGATGTAAGGAAGG
AGGAGGTCGTGGCGGTGACAGGGGAGGGGGACGAGGGGGAGCAGCGTGAG
GGGGAGGAAGAGGAGGAGTTGGAGATTGAGTAG

Coding sequence (CDS) from alignment at scaffold_1:61386..63068+

>mRNA_1240 ID=mRNA_1240|Name=jgi.p|Nanoce1779_2|645268|organism=Nannochloropsis oceanica|type=CDS|length=4338bp|location=Sequence derived from alignment at scaffold_1:61386..63068+ (Nannochloropsis oceanica)
ATGGAGGAGGGAGGGGAGGAGGAGGAGGAGGGAGGGGGGGAGGGAGAGAG
GGAGGGAGGGAGGGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCT
TGAGAGGGGCGACGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATG
TGGATGGAGGCCACGACAGCGTTAGCGAAGTTTGCGGAGCGCCTTCCATT
GGAAAAGGTGGAAAAAAAGGCACCGCGGGAGACGCGGTCTTGGCAGGAAA
TGCTGGGGGCCGTCGGGGAGGGAGGAGGGGGAGAAGGAGGAGGAGGGGAG
GAGGGGGGGGGGAGGAACGGTGCGGACTCCCTCTTCCTCATGCTTCAGGG
CGGGGAGGCCTCGCGGGCGAGTGCTCGGCATCAACTGCTGCGACTCGTCT
GTCAAGCTGTGGAGAAGGCGGAAGACGGTCAAACAGCCTACTACAGGCGA
ACGGTGCAATACCTCCATCACTTCCGCGCCGCCCTCGACCAGGCCAAACG
TTTGAAGGAGGGCCCGGGGGAGGGAGGGAGGGAGGGGGGGAATGAGTTCT
GGCGGGGAGTCCAAGAGGCAGGGTTGACACTGTGTGAGGTGGATGAGGCG
GAGGCGCGGGCTTTCCTTGAGGAGGAAGATGTAAGGAAGGAGGAGGTCGT
GGCGGTGACAGGGGAGGGGGACGAGGGGGAGCAGCGTGAGGGGGAGGAAG
AGGAGGAGTTGGAGATTGAGTAGATGGAGGAGGGAGGGGAGGAGGAGGAG
GAGGGAGGGGGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGAGCGGAAGCC
CGTGAAGTTGCTGTCGTCGTCCTTGAGAGGGGCGACGGGACTGCCCCCCG
AGATGGAGCGGGAAGAGGGGATGTGGATGGAGGCCACGACAGCGTTAGCG
AAGTTTGCGGAGCGCCTTCCATTGGAAAAGGTGGAAAAAAAGGCACCGCG
GGAGACGCGGTCTTGGCAGGAAATGCTGGGGGCCGTCGGGGAGGGAGGAG
GGGGAGAAGGAGGAGGAGGGGAGGAGGGGGGGGGGAGGAACGGTGCGGAC
TCCCTCTTCCTCATGCTTCAGGGCGGGGAGGCCTCGCGGGCGAGTGCTCG
GCATCAACTGCTGCGACTCGTCTGTCAAGCTGTGGAGAAGGCGGAAGACG
GTCAAACAGCCTACTACAGGCGAACGGTGCAATACCTCCATCACTTCCGC
GCCGCCCTCGACCAGGCCAAACGTTTGAAGGAGGGCCCGGGGGAGGGAGG
GAGGGAGGGGGGGAATGAGTTCTGGCGGGGAGTCCAAGAGGCAGGGTTGA
CACTGTGTGAGGTGGATGAGGCGGAGGCGCGGGCTTTCCTTGAGGAGGAA
GATGTAAGGAAGGAGGAGGTCGTGGCGGTGACAGGGGAGGGGGACGAGGG
GGAGCAGCGTGAGGGGGAGGAAGAGGAGGAGTTGGAGATTGAGTAGATGG
AGGAGGGAGGGGAGGAGGAGGAGGAGGGAGGGGGGGAGGGAGAGAGGGAG
GGAGGGAGGGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCTTGAG
AGGGGCGACGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATGTGGA
TGGAGGCCACGACAGCGTTAGCGAAGTTTGCGGAGCGCCTTCCATTGGAA
AAGGTGGAAAAAAAGGCACCGCGGGAGACGCGGTCTTGGCAGGAAATGCT
GGGGGCCGTCGGGGAGGGAGGAGGGGGAGAAGGAGGAGGAGGGGAGGAGG
GGGGGGGGAGGAACGGTGCGGACTCCCTCTTCCTCATGCTTCAGGGCGGG
GAGGCCTCGCGGGCGAGTGCTCGGCATCAACTGCTGCGACTCGTCTGTCA
AGCTGTGGAGAAGGCGGAAGACGGTCAAACAGCCTACTACAGGCGAACGG
TGCAATACCTCCATCACTTCCGCGCCGCCCTCGACCAGGCCAAACGTTTG
AAGGAGGGCCCGGGGGAGGGAGGGAGGGAGGGGGGGAATGAGTTCTGGCG
GGGAGTCCAAGAGGCAGGGTTGACACTGTGTGAGGTGGATGAGGCGGAGG
CGCGGGCTTTCCTTGAGGAGGAAGATGTAAGGAAGGAGGAGGTCGTGGCG
GTGACAGGGGAGGGGGACGAGGGGGAGCAGCGTGAGGGGGAGGAAGAGGA
GGAGTTGGAGATTGAGTAGATGGAGGAGGGAGGGGAGGAGGAGGAGGAGG
GAGGGGGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGAGCGGAAGCCCGTG
AAGTTGCTGTCGTCGTCCTTGAGAGGGGCGACGGGACTGCCCCCCGAGAT
GGAGCGGGAAGAGGGGATGTGGATGGAGGCCACGACAGCGTTAGCGAAGT
TTGCGGAGCGCCTTCCATTGGAAAAGGTGGAAAAAAAGGCACCGCGGGAG
ACGCGGTCTTGGCAGGAAATGCTGGGGGCCGTCGGGGAGGGAGGAGGGGG
AGAAGGAGGAGGAGGGGAGGAGGGGGGGGGGAGGAACGGTGCGGACTCCC
TCTTCCTCATGCTTCAGGGCGGGGAGGCCTCGCGGGCGAGTGCTCGGCAT
CAACTGCTGCGACTCGTCTGTCAAGCTGTGGAGAAGGCGGAAGACGGTCA
AACAGCCTACTACAGGCGAACGGTGCAATACCTCCATCACTTCCGCGCCG
CCCTCGACCAGGCCAAACGTTTGAAGGAGGGCCCGGGGGAGGGAGGGAGG
GAGGGGGGGAATGAGTTCTGGCGGGGAGTCCAAGAGGCAGGGTTGACACT
GTGTGAGGTGGATGAGGCGGAGGCGCGGGCTTTCCTTGAGGAGGAAGATG
TAAGGAAGGAGGAGGTCGTGGCGGTGACAGGGGAGGGGGACGAGGGGGAG
CAGCGTGAGGGGGAGGAAGAGGAGGAGTTGGAGATTGAGTAGATGGAGGA
GGGAGGGGAGGAGGAGGAGGAGGGAGGGGGGGAGGGAGAGAGGGAGGGAG
GGAGGGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCTTGAGAGGG
GCGACGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATGTGGATGGA
GGCCACGACAGCGTTAGCGAAGTTTGCGGAGCGCCTTCCATTGGAAAAGG
TGGAAAAAAAGGCACCGCGGGAGACGCGGTCTTGGCAGGAAATGCTGGGG
GCCGTCGGGGAGGGAGGAGGGGGAGAAGGAGGAGGAGGGGAGGAGGGGGG
GGGGAGGAACGGTGCGGACTCCCTCTTCCTCATGCTTCAGGGCGGGGAGG
CCTCGCGGGCGAGTGCTCGGCATCAACTGCTGCGACTCGTCTGTCAAGCT
GTGGAGAAGGCGGAAGACGGTCAAACAGCCTACTACAGGCGAACGGTGCA
ATACCTCCATCACTTCCGCGCCGCCCTCGACCAGGCCAAACGTTTGAAGG
AGGGCCCGGGGGAGGGAGGGAGGGAGGGGGGGAATGAGTTCTGGCGGGGA
GTCCAAGAGGCAGGGTTGACACTGTGTGAGGTGGATGAGGCGGAGGCGCG
GGCTTTCCTTGAGGAGGAAGATGTAAGGAAGGAGGAGGTCGTGGCGGTGA
CAGGGGAGGGGGACGAGGGGGAGCAGCGTGAGGGGGAGGAAGAGGAGGAG
TTGGAGATTGAGTAGATGGAGGAGGGAGGGGAGGAGGAGGAGGAGGGAGG
GGGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGAGCGGAAGCCCGTGAAGT
TGCTGTCGTCGTCCTTGAGAGGGGCGACGGGACTGCCCCCCGAGATGGAG
CGGGAAGAGGGGATGTGGATGGAGGCCACGACAGCGTTAGCGAAGTTTGC
GGAGCGCCTTCCATTGGAAAAGGTGGAAAAAAAGGCACCGCGGGAGACGC
GGTCTTGGCAGGAAATGCTGGGGGCCGTCGGGGAGGGAGGAGGGGGAGAA
GGAGGAGGAGGGGAGGAGGGGGGGGGGAGGAACGGTGCGGACTCCCTCTT
CCTCATGCTTCAGGGCGGGGAGGCCTCGCGGGCGAGTGCTCGGCATCAAC
TGCTGCGACTCGTCTGTCAAGCTGTGGAGAAGGCGGAAGACGGTCAAACA
GCCTACTACAGGCGAACGGTGCAATACCTCCATCACTTCCGCGCCGCCCT
CGACCAGGCCAAACGTTTGAAGGAGGGCCCGGGGGAGGGAGGGAGGGAGG
GGGGGAATGAGTTCTGGCGGGGAGTCCAAGAGGCAGGGTTGACACTGTGT
GAGGTGGATGAGGCGGAGGCGCGGGCTTTCCTTGAGGAGGAAGATGTAAG
GAAGGAGGAGGTCGTGGCGGTGACAGGGGAGGGGGACGAGGGGGAGCAGC
GTGAGGGGGAGGAAGAGGAGGAGTTGGAGATTGAGTAG

Synonyms

Publications