jgi.p|Nanoce1779_2|576299, mRNA_124 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576299
Unique NamemRNA_124
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_3:328599..329898 +

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Properties
Property NameValue
TranscriptId576385
TrackFilteredModels2
ProteinId576299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:328599..329898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576299gene_124Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576299mRNA_124-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_124CDS_124Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_124 ID=mRNA_124|Name=jgi.p|Nanoce1779_2|576299|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ACAGGCGGACCACGAGGCAGCACAGGAGAAGAAAGTAACAGACGACACGA
GGCGAGATTCGAGCGAGAACAACACCAAACGCAGCCCCCCTTCACAACCA
TGATGGAGGGACACGCTCAACAAGAGGACGAATTGCAGTTTATCAGCGTG
CCCAACTCGTCCCTACCAAGTGGCATGCCAGGCCAAGCACCATATGCCCC
CATGGGCGCCGCCTCTGCCGCGGGTCCTCCCCCTCCTCCCGCTGTTGACC
CCATGTCTTTCATCAAACAGTCCAGGCACCCGGTCGCCGCGGCCTTCCAC
TTCGTTTTCAAAATCCTGGCCCTGTTTTTCTATCTCTTCGGTGGCTTCTT
CTCCTCTAACTTTGTCTTTGTCTGCGTGGTGTGCATCCTACTGTTAGCCT
TCGACTTTTGGACGGTCAAAAATGTCACAGGCCGCTTGTTGGTGGGGCTG
CGGTGGTGGAACAACGTGAGGGATGACGGGAGCAATGAGTGGGTATTTGA
GTCGATTGAAAACCCGGAAGAGATTCATCCGACGGATGCGCGGCTCTTTT
GGACTGGGTTGTACGTAACTCCCGCCTTGTGGGTGGTCTTCTTCCTGGTC
GCCTTGTTAAAGTTTTCGGTGCAATGGCTGGTGATAGTGCTTGTGGCCCT
GGTTTTGTCTGGGGCAAATATCGTGGGTTACTACAAGTGTAGTAATGACC
AGAAGAAGAAGGTGCAGAATATGGTGCAGGGTGCTGCTTTCAAGACTGCC
TTTGGCCTGGGTACCTCGGCGGTGCAGAGCTTTATTTCGACTGCCTTTGG
AGGGCAGCAACAGCAGGGGCAGCAGCAGCAACAGCAGCGAGGGGGAATTA
ATGCATAGATGGAGGGAAGGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAA
GGAAGATATGTACGAATAGCGGGAGGAGGAGGAGGAGAAGAAGACGAAGA
AGAA
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protein sequence of jgi.p|Nanoce1779_2|576299

>mRNA_124-protein ID=mRNA_124-protein|Name=jgi.p|Nanoce1779_2|576299|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MMEGHAQQEDELQFISVPNSSLPSGMPGQAPYAPMGAASAAGPPPPPAVD
PMSFIKQSRHPVAAAFHFVFKILALFFYLFGGFFSSNFVFVCVVCILLLA
FDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESIENPEEIHPTDARLF
WTGLYVTPALWVVFFLVALLKFSVQWLVIVLVALVLSGANIVGYYKCSND
QKKKVQNMVQGAAFKTAFGLGTSAVQSFISTAFGGQQQQGQQQQQQRGGI
NA*
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mRNA from alignment at scaffold_3:328599..329898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_124 ID=mRNA_124|Name=jgi.p|Nanoce1779_2|576299|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp|location=Sequence derived from alignment at scaffold_3:328599..329898+ (Nannochloropsis oceanica)
ACAGGCGGACCACGAGGCAGCACAGGAGAAGAAAGTAACAGACGACACGA
GGCGAGATTCGAGCGAGAACAACACCAAACGCAGCCCCCCTTCACAACCA
TGATGGAGGGACACGCTCAACAAGAGGACGAATTGCAGGTTTGTGTGCGA
GTGTGGTGCCTGGGTGGATTGGCAACGAGATGTTGTCAATTTCGGACGTT
GCCAAGGCGCCGTCATGCGGATCGTAGGAGACCCTCCCTCCCTCCCTGCT
CCCTGCCCGACATACCACCATCCACGCCACCGCCACTCTCCCTATAATCC
TCGTTCTGCTTTCCCTTTTTCCTCTTTCAACAGTTTATCAGCGTGCCCAA
CTCGTCCCTACCAAGTGGCATGCCAGGCCAAGCACCATATGCCCCCATGG
GCGCCGCCTCTGCCGCGGGTCCTCCCCCTCCTCCCGCTGTTGACCCCATG
TCTTTCATCAAACAGTCCAGGGTACGTGTTATTGTTGCTTGCATTACTGT
GCAAAAGTATGGGCTCGGGTGTGTGCTTTAAACTCCTCTCGCGATCTAAT
TCAAATCCTTCCTCCCTTCTCGCCCTTCATTCTTCCATTCCGACATAGCA
CCCGGTCGCCGCGGCCTTCCACTTCGTTTTCAAAATCCTGGCCCTGTTTT
TCTATCTCTTCGGTGGCTTCTTCTCCTCTAACTTTGTCTTTGTCTGCGTG
GTGTGCATCCTACTGTTAGCCTTCGACTTTTGGACGGTCAAAAATGTCAC
AGGCCGCTTGTTGGTGGGGCTGCGGTGGTGGAACAACGTGAGGGATGACG
GGAGCAATGAGTGGGTATTTGAGTCGATTGAAAACCCGGAAGAGATTCAT
CCGACGGATGCGCGGCTCTTTTGGACTGGGTTGTACGTAACTCCCGCCTT
GTGGGTGGTCTTCTTCCTGGTCGCCTTGTTAAAGTTTTCGGTGCAATGGC
TGGTGATAGTGCTTGTGGCCCTGGTTTTGTCTGGGGCAAATATCGTGGGT
TACTACAAGTGTAGTAATGACCAGAAGAAGAAGGTGCAGAATATGGTGCA
GGGTGCTGCTTTCAAGACTGCCTTTGGCCTGGGTACCTCGGCGGTGCAGA
GCTTTATTTCGACTGCCTTTGGAGGGCAGCAACAGCAGGGGCAGCAGCAG
CAACAGCAGCGAGGGGGAATTAATGCATAGATGGAGGGAAGGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGAAAGAAAAGGAA
GATATGTACGAATAGCGGGAGGAGGAGGAGGAGAAGAAGACGAAGAAGAA
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Coding sequence (CDS) from alignment at scaffold_3:328599..329898+

>mRNA_124 ID=mRNA_124|Name=jgi.p|Nanoce1779_2|576299|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_3:328599..329898+ (Nannochloropsis oceanica)
ATGATGGAGGGACACGCTCAACAAGAGGACGAATTGCAGTTTATCAGCGT
GCCCAACTCGTCCCTACCAAGTGGCATGCCAGGCCAAGCACCATATGCCC
CCATGGGCGCCGCCTCTGCCGCGGGTCCTCCCCCTCCTCCCGCTGTTGAC
CCCATGTCTTTCATCAAACAGTCCAGGCACCCGGTCGCCGCGGCCTTCCA
CTTCGTTTTCAAAATCCTGGCCCTGTTTTTCTATCTCTTCGGTGGCTTCT
TCTCCTCTAACTTTGTCTTTGTCTGCGTGGTGTGCATCCTACTGTTAGCC
TTCGACTTTTGGACGGTCAAAAATGTCACAGGCCGCTTGTTGGTGGGGCT
GCGGTGGTGGAACAACGTGAGGGATGACGGGAGCAATGAGTGGGTATTTG
AGTCGATTGAAAACCCGGAAGAGATTCATCCGACGGATGCGCGGCTCTTT
TGGACTGGGTTGTACGTAACTCCCGCCTTGTGGGTGGTCTTCTTCCTGGT
CGCCTTGTTAAAGTTTTCGGTGCAATGGCTGGTGATAGTGCTTGTGGCCC
TGGTTTTGTCTGGGGCAAATATCGTGGGTTACTACAAGTGTAGTAATGAC
CAGAAGAAGAAGGTGCAGAATATGGTGCAGGGTGCTGCTTTCAAGACTGC
CTTTGGCCTGGGTACCTCGGCGGTGCAGAGCTTTATTTCGACTGCCTTTG
GAGGGCAGCAACAGCAGGGGCAGCAGCAGCAACAGCAGCGAGGGGGAATT
AATGCATAGATGATGGAGGGACACGCTCAACAAGAGGACGAATTGCAGTT
TATCAGCGTGCCCAACTCGTCCCTACCAAGTGGCATGCCAGGCCAAGCAC
CATATGCCCCCATGGGCGCCGCCTCTGCCGCGGGTCCTCCCCCTCCTCCC
GCTGTTGACCCCATGTCTTTCATCAAACAGTCCAGGCACCCGGTCGCCGC
GGCCTTCCACTTCGTTTTCAAAATCCTGGCCCTGTTTTTCTATCTCTTCG
GTGGCTTCTTCTCCTCTAACTTTGTCTTTGTCTGCGTGGTGTGCATCCTA
CTGTTAGCCTTCGACTTTTGGACGGTCAAAAATGTCACAGGCCGCTTGTT
GGTGGGGCTGCGGTGGTGGAACAACGTGAGGGATGACGGGAGCAATGAGT
GGGTATTTGAGTCGATTGAAAACCCGGAAGAGATTCATCCGACGGATGCG
CGGCTCTTTTGGACTGGGTTGTACGTAACTCCCGCCTTGTGGGTGGTCTT
CTTCCTGGTCGCCTTGTTAAAGTTTTCGGTGCAATGGCTGGTGATAGTGC
TTGTGGCCCTGGTTTTGTCTGGGGCAAATATCGTGGGTTACTACAAGTGT
AGTAATGACCAGAAGAAGAAGGTGCAGAATATGGTGCAGGGTGCTGCTTT
CAAGACTGCCTTTGGCCTGGGTACCTCGGCGGTGCAGAGCTTTATTTCGA
CTGCCTTTGGAGGGCAGCAACAGCAGGGGCAGCAGCAGCAACAGCAGCGA
GGGGGAATTAATGCATAGATGATGGAGGGACACGCTCAACAAGAGGACGA
ATTGCAGTTTATCAGCGTGCCCAACTCGTCCCTACCAAGTGGCATGCCAG
GCCAAGCACCATATGCCCCCATGGGCGCCGCCTCTGCCGCGGGTCCTCCC
CCTCCTCCCGCTGTTGACCCCATGTCTTTCATCAAACAGTCCAGGCACCC
GGTCGCCGCGGCCTTCCACTTCGTTTTCAAAATCCTGGCCCTGTTTTTCT
ATCTCTTCGGTGGCTTCTTCTCCTCTAACTTTGTCTTTGTCTGCGTGGTG
TGCATCCTACTGTTAGCCTTCGACTTTTGGACGGTCAAAAATGTCACAGG
CCGCTTGTTGGTGGGGCTGCGGTGGTGGAACAACGTGAGGGATGACGGGA
GCAATGAGTGGGTATTTGAGTCGATTGAAAACCCGGAAGAGATTCATCCG
ACGGATGCGCGGCTCTTTTGGACTGGGTTGTACGTAACTCCCGCCTTGTG
GGTGGTCTTCTTCCTGGTCGCCTTGTTAAAGTTTTCGGTGCAATGGCTGG
TGATAGTGCTTGTGGCCCTGGTTTTGTCTGGGGCAAATATCGTGGGTTAC
TACAAGTGTAGTAATGACCAGAAGAAGAAGGTGCAGAATATGGTGCAGGG
TGCTGCTTTCAAGACTGCCTTTGGCCTGGGTACCTCGGCGGTGCAGAGCT
TTATTTCGACTGCCTTTGGAGGGCAGCAACAGCAGGGGCAGCAGCAGCAA
CAGCAGCGAGGGGGAATTAATGCATAG
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Synonyms
Publications