jgi.p|Nanoce1779_2|645266, mRNA_1239 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|645266
Unique NamemRNA_1239
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1113
Alignment locationscaffold_1:60266..61378 +

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Properties
Property NameValue
TranscriptId645352
TrackFilteredModels2
ProteinId645266
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:60266..61378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645266gene_1239Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645266mRNA_1239-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1239CDS_1239Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1239 ID=mRNA_1239|Name=jgi.p|Nanoce1779_2|645266|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
GCAACAGCCGCAACAGAATCCGAGGTCGACCATATCCGCCGTGAGAACTA
CGCCATGGTCTCCTCCATCATCACCTGCCTCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCC
TCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTTACATCT
CTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCAACATGC
CTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTCTCTGCC
CTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCGACACGA
CCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGGAGGAAG
GGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGGGAGATG
GTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTCGACGGC
GGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGGGAGGGG
GGGAGGGGGGGAGCGGGACGGTGGTTGAGATGCGGGTGCTAGGTACACTG
CCGTCGGTGGTGGTGCCGAGGCATCACGCCATGGGGATTGCGTCGGCGGT
GAAACCACACAAAGACGAACCGGAGGGGGGGAGGGCAGCCTCCCTCCTTC
TAGTGCTGGGGGAAGCTTTGAGGGAGGGGAGGAAGGTGGCGCTCGTGCGC
TATGTGAAGAGGGAGGGAGGGGATCCCGAGGTCGGCCTGTTGACACCCCC
GAGTGTGTGGGCGAATCCCAGGGAGGGCATAGGGTGGTGGGGGAGGGAGG
GAGAGGGATGGCCGCCTTTTTTGGTGTATAATAAGTTGCCGTTTCAGGAG
GACTTACGGTCGTATGGATTTCGGAGTTTGAGTGATCCGCAGGGGAGGCA
CTTTCCGACGGAGGAAGAGAGGGAGGCGGGTCTGGCGGTGGTGGATGCTC
TGACCTTTGCCCCGAAGAGGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAT
GGCGTTGAGGCTGGCCCCGCATCCGTGGACGAGGGCGGTGTATAGGGCGG
CATTAGAGAAAGG
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protein sequence of jgi.p|Nanoce1779_2|645266

>mRNA_1239-protein ID=mRNA_1239-protein|Name=jgi.p|Nanoce1779_2|645266|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MVSSIITCLSSSSSSSSSSSSSSSSSSSFSSSSSPPPPLLEAAPFLLHLS
QRAFQKVGHSANSNMPFLLPSLPFTLRAQVSALTMPARPPSLKKYARHDP
SKQALKVDRRYTVEEGGEDGGEGGRELERREMVKGYRYGDVYLPVDSTAE
RRLKLEGREGGKEGGGEGGSGTVVEMRVLGTLPSVVVPRHHAMGIASAVK
PHKDEPEGGRAASLLLVLGEALREGRKVALVRYVKREGGDPEVGLLTPPS
VWANPREGIGWWGREGEGWPPFLVYNKLPFQEDLRSYGFRSLSDPQGRHF
PTEEEREAGLAVVDALTFAPKRREGGGEGGRDGVEAGPASVDEGGV*
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mRNA from alignment at scaffold_1:60266..61378+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1239 ID=mRNA_1239|Name=jgi.p|Nanoce1779_2|645266|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at scaffold_1:60266..61378+ (Nannochloropsis oceanica)
GCAACAGCCGCAACAGAATCCGAGGTCGACCATATCCGCCGTGAGAACTA
CGCCATGGTCTCCTCCATCATCACCTGCCTCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCC
TCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTTACATCT
CTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCAACATGC
CTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTCTCTGCC
CTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCGACACGA
CCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGGAGGAAG
GGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGGGAGATG
GTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTCGACGGC
GGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGGGAGGGG
GGGAGGGGGGGAGCGGGACGGTGGTTGAGATGCGGGTGCTAGGTACACTG
CCGTCGGTGGTGGTGCCGAGGCATCACGCCATGGGGATTGCGTCGGCGGT
GAAACCACACAAAGACGAACCGGAGGGGGGGAGGGCAGCCTCCCTCCTTC
TAGTGCTGGGGGAAGCTTTGAGGGAGGGGAGGAAGGTGGCGCTCGTGCGC
TATGTGAAGAGGGAGGGAGGGGATCCCGAGGTCGGCCTGTTGACACCCCC
GAGTGTGTGGGCGAATCCCAGGGAGGGCATAGGGTGGTGGGGGAGGGAGG
GAGAGGGATGGCCGCCTTTTTTGGTGTATAATAAGTTGCCGTTTCAGGAG
GACTTACGGTCGTATGGATTTCGGAGTTTGAGTGATCCGCAGGGGAGGCA
CTTTCCGACGGAGGAAGAGAGGGAGGCGGGTCTGGCGGTGGTGGATGCTC
TGACCTTTGCCCCGAAGAGGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAT
GGCGTTGAGGCTGGCCCCGCATCCGTGGACGAGGGCGGTGTATAGGGCGG
CATTAGAGAAAGG
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Coding sequence (CDS) from alignment at scaffold_1:60266..61378+

>mRNA_1239 ID=mRNA_1239|Name=jgi.p|Nanoce1779_2|645266|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_1:60266..61378+ (Nannochloropsis oceanica)
ATGGTCTCCTCCATCATCACCTGCCTCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCT
CTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTTACATCTCTCC
CAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCAACATGCCTTT
CCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTCTCTGCCCTGA
CGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCGACACGACCCG
AGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGGAGGAAGGGGG
GGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGGGAGATGGTGA
AGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTCGACGGCGGAG
AGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGGGAGGGGGGGA
GGGGGGGAGCGGGACGGTGGTTGAGATGCGGGTGCTAGGTACACTGCCGT
CGGTGGTGGTGCCGAGGCATCACGCCATGGGGATTGCGTCGGCGGTGAAA
CCACACAAAGACGAACCGGAGGGGGGGAGGGCAGCCTCCCTCCTTCTAGT
GCTGGGGGAAGCTTTGAGGGAGGGGAGGAAGGTGGCGCTCGTGCGCTATG
TGAAGAGGGAGGGAGGGGATCCCGAGGTCGGCCTGTTGACACCCCCGAGT
GTGTGGGCGAATCCCAGGGAGGGCATAGGGTGGTGGGGGAGGGAGGGAGA
GGGATGGCCGCCTTTTTTGGTGTATAATAAGTTGCCGTTTCAGGAGGACT
TACGGTCGTATGGATTTCGGAGTTTGAGTGATCCGCAGGGGAGGCACTTT
CCGACGGAGGAAGAGAGGGAGGCGGGTCTGGCGGTGGTGGATGCTCTGAC
CTTTGCCCCGAAGAGGAGGGAGGGAGGGGGGGAGGGAGGGAGGGATGGCG
TTGAGGCTGGCCCCGCATCCGTGGACGAGGGCGGTGTATAG
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Synonyms
Publications