jgi.p|Nanoce1779_2|688, mRNA_1238 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|688
Unique NamemRNA_1238
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1002
Alignment locationscaffold_1:58947..60265 +

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Properties
Property NameValue
TranscriptId774
TrackFilteredModels2
ProteinId688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:58947..60265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|688gene_1238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|688mRNA_1238-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1238CDS_1238Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1238 ID=mRNA_1238|Name=jgi.p|Nanoce1779_2|688|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT
TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC
CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT
TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG
CTGAAGCAGGCAAGAAAAGCAAAAAATGTGAGGCGGGAATCTACGTATTC
GGGACCGACGATACCGCCCACCCCCTGCAAGAGCTTGGGGAGGGCTACGA
GCATCTGCTAGAAGTTGCCCCTATCCAACATCTACACCTGGGATGTGTGG
CTGAGGCCCGCCGTCTCCTTCCCTCCCAGAAGGGGGTGGAAGGAGATCTA
CTTTCCGGGCTCATCCTGGCAGTGGACCGTTTGAGGTTCAGGACGGGGAT
GATGGGCAAGAAGTGTGAGCGGCATCTGGTGGTGGTGACTGATGCTTGCT
CGCGTTTGTCGAGCACGGACGGGCTGGAAGAGACGGTGCAACAGCTGATC
GAGATGGACGTGCGCTTACAATTTGTCGGCTTCAACCTCCCGTCATTCAC
CTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCGCCGCCACCGCTGCCG
TCTCCGTCAAAAAGAGAAAGAAGGAGAGGAGAAAAAAAAGAAAAAAAAAG
AAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGGAGGAGGAGGAGGAGGA
GGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGGGGGGAGGAGGAGGAGG
AGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCAGCAGCAGCAGCAGAAG
CAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGGAGGTGGAGGAGGAGGA
GAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAGGAGAAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGAGAAGGAGAAGAAATAA
GA
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protein sequence of jgi.p|Nanoce1779_2|688

>mRNA_1238-protein ID=mRNA_1238-protein|Name=jgi.p|Nanoce1779_2|688|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLL
FAAQAVAEAGKKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQH
LHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLV
VVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFTSSEDSSSSSS
AAATAAVSVKKRKKERRKKRKKKKKEKRKKEEEQEEEEEEEEQQQQEKEE
GGEEEEEKEEEKEEEEEQQQQQKQQQEEKKEKEKEVEEEEKKKEEEEEQQ
QEKQQQQ*
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mRNA from alignment at scaffold_1:58947..60265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1238 ID=mRNA_1238|Name=jgi.p|Nanoce1779_2|688|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp|location=Sequence derived from alignment at scaffold_1:58947..60265+ (Nannochloropsis oceanica)
ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT
TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC
CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT
TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG
CTGAAGCAGGCAAGTCTGGAATGAGATGAGACGGGATCAATGGGAGGGTG
CTGGACGAGAGATGGAAAATAAATTGCAGGAGCGTCAAGAAAGCGCATAC
GGGAAGTCCCGTTATCCTGATGCGTCTTCACTCACAAATTTCACAAATCC
ATGTAATCGCCCTCACCCCCCCCCTCTCTCTTTCACACAGGGAGGAAAAG
CAAAAAATGTGAGGCGGGAATCTACGTATTCGGGACCGACGATACCGCCC
ACCCCCTGCAAGAGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCC
CCTATCCAACATCTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCT
TCCCTCCCAGAAGGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGG
CAGTGGACCGTTTGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAG
CGGCATCTGGTGGTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGA
CGGGCTGGAAGAGACGGTGCAACAGGTCGGGGAGGGAGGGAGGGAGGGAG
AGAGGGAGGGAGGATTTTTTTTAAATGAGCTGGATTTGAGCAGGCTTTGT
CGACCAATGTCCTCATTCCATCCCTCCCCCCCCTTCTCCCTCCCTTCCTG
AACCCCGCCAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCTTC
AACCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGC
CGCCGCCACCGCTGCCGTCTCCGTCAAAAAGAGAAAGAAGGAGAGGAGAA
AAAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAG
GAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGG
GGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGC
AGCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAG
GAGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCA
GGAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGG
AGAAGGAGAAGAAATAAGA
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Coding sequence (CDS) from alignment at scaffold_1:58947..60265+

>mRNA_1238 ID=mRNA_1238|Name=jgi.p|Nanoce1779_2|688|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_1:58947..60265+ (Nannochloropsis oceanica)
ATGTCACAAGCATGGGTCTTCTTGCTTGACGGCAGCGTGAGCATGGGCGA
CGCCTACACGCATCCCTCCCTCCTGGAGGCCTTGCCTTCAGCTTTGCAAG
ACCCTCCTCCCACCAAGCTTCAGGTGGCCCAAGAAATAACCACCCTCCTC
TTTGCCGCACAAGCCGTGGCTGAAGCAGGCAAGAAAAGCAAAAAATGTGA
GGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCACCCCCTGCAAG
AGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCCCTATCCAACAT
CTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTTCCCTCCCAGAA
GGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGCAGTGGACCGTT
TGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGCGGCATCTGGTG
GTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGACGGGCTGGAAGA
GACGGTGCAACAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCT
TCAACCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCC
GCCGCCGCCACCGCTGCCGTCTCCGTCAAAAAGAGAAAGAAGGAGAGGAG
AAAAAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAAC
AGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAG
GGGGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGA
GCAGCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGA
AGGAGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAG
CAGGAGAAGCAGCAGCAGCAGTAGATGTCACAAGCATGGGTCTTCTTGCT
TGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCCCTCCTGG
AGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCTTCAGGTG
GCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGGCTGAAGC
AGGCAAGAAAAGCAAAAAATGTGAGGCGGGAATCTACGTATTCGGGACCG
ACGATACCGCCCACCCCCTGCAAGAGCTTGGGGAGGGCTACGAGCATCTG
CTAGAAGTTGCCCCTATCCAACATCTACACCTGGGATGTGTGGCTGAGGC
CCGCCGTCTCCTTCCCTCCCAGAAGGGGGTGGAAGGAGATCTACTTTCCG
GGCTCATCCTGGCAGTGGACCGTTTGAGGTTCAGGACGGGGATGATGGGC
AAGAAGTGTGAGCGGCATCTGGTGGTGGTGACTGATGCTTGCTCGCGTTT
GTCGAGCACGGACGGGCTGGAAGAGACGGTGCAACAGCTGATCGAGATGG
ACGTGCGCTTACAATTTGTCGGCTTCAACCTCCCGTCATTCACCTCCTCC
GAAGATTCCTCCTCCTCCTCTTCCGCCGCCGCCACCGCTGCCGTCTCCGT
CAAAAAGAGAAAGAAGGAGAGGAGAAAAAAAAGAAAAAAAAAGAAGAAGG
AGAAGAGGAAGAAGGAGGAGGAACAGGAGGAGGAGGAGGAGGAGGAGGAG
CAGCAGCAGCAGGAGAAGGAGGAGGGGGGGGAGGAGGAGGAGGAGAAGGA
GGAGGAGAAGGAGGAAGAAGAAGAGCAGCAGCAGCAGCAGAAGCAGCAGC
AGGAGGAGAAGAAGGAGAAGGAGAAGGAGGTGGAGGAGGAGGAGAAGAAG
AAGGAGGAGGAGGAAGAACAGCAGCAGGAGAAGCAGCAGCAGCAGTAGAT
GTCACAAGCATGGGTCTTCTTGCTTGACGGCAGCGTGAGCATGGGCGACG
CCTACACGCATCCCTCCCTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGAC
CCTCCTCCCACCAAGCTTCAGGTGGCCCAAGAAATAACCACCCTCCTCTT
TGCCGCACAAGCCGTGGCTGAAGCAGGCAAGAAAAGCAAAAAATGTGAGG
CGGGAATCTACGTATTCGGGACCGACGATACCGCCCACCCCCTGCAAGAG
CTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCCCTATCCAACATCT
ACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTTCCCTCCCAGAAGG
GGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGCAGTGGACCGTTTG
AGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGCGGCATCTGGTGGT
GGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGACGGGCTGGAAGAGA
CGGTGCAACAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCTTC
AACCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGC
CGCCGCCACCGCTGCCGTCTCCGTCAAAAAGAGAAAGAAGGAGAGGAGAA
AAAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAG
GAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGG
GGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGC
AGCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAG
GAGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCA
GGAGAAGCAGCAGCAGCAGTAG
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Synonyms
Publications