jgi.p|Nanoce1779_2|667223, mRNA_1237 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667223
Unique Name	mRNA_1237
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	833
Alignment location	scaffold_1:57020..58830 -

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Properties


Property Name	Value
TranscriptId	667309
Track	FilteredModels2
ProteinId	667223

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:57020..58830 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667223	gene_1237	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667223	mRNA_1237-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1237	CDS_1237	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:57020..58830-
coding sequence from alignment at scaffold_1:57020..58830-

mRNA sequence

>mRNA_1237 ID=mRNA_1237|Name=jgi.p|Nanoce1779_2|667223|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
ATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTATAAC
AAATAAAAAAGAGCAAGGCACCCTCGGAATCGCGACCAATTCACCACCGC
CCACGGTTGTAGACCGACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCC
AAGCCCTTGGGTTTTGATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTA
CCCGGCTACAACCACAAAATTTGCGGATCCCGTCCCCGGAGACAGTCGGG
ACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAAAAAGCC
AAGCTTAACCTCATTTATGACGCTGCCAAGGACGGGTGGAAGAAAGGAGA
CTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCTTGGTGGTGGCCCGCA
CCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCGGAGGGCTGGGAAGGC
GTAGGCGACGAGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTCA
GGGCAAGATGCTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGTG
CCGACTACGCGATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGCTAC
GAAGATTTCCTCCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTAAATT
AGGGCTGGCATACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTCGCGC
CCTCAGAGGGCAAGACGGCCGAGATCGTAGACTTGAAGGTGTATGCGCGG
CAAGGAAGATGAGAGAGGGAGGGATTTAGGGGGGAAGAAGATAGGCGTGC
CTTAAGGGCAGGATACTAGAGAGGGAAGGAGGC

protein sequence of jgi.p|Nanoce1779_2|667223

>mRNA_1237-protein ID=mRNA_1237-protein|Name=jgi.p|Nanoce1779_2|667223|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MSDLKKKKWLNSTKIITNKKEQGTLGIATNSPPPTVVDRLFSLFFGAKEA
KPLGFDRISVEKSPEVYPATTTKFADPVPGDSRDVAALRPLLAQTRLEKA
KLNLIYDAAKDGWKKGDFHRKVDNRGASLVVARTRGGAVCGGYNPEGWEG
VGDERQCISAFLFTWPQGKMLAARPIKCPKVGGADYAIDDNPSLALKFGY
EDFLLKLTTDRKAVSKLGLAYAKLPGGATSLFAPSEGKTAEIVDLKVYAR
QGR*

mRNA from alignment at scaffold_1:57020..58830-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1237 ID=mRNA_1237|Name=jgi.p|Nanoce1779_2|667223|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_1:57020..58830- (Nannochloropsis oceanica)
ATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTATAAC
AAATAAAAAAGAGCAAGGCACCCTCGGAATCGCGGTACAGACTCGAAGCC
CCTTGATGAGAGAGGTTCTGGACGCTTATCGCTGATGCCTCCGCCGCATT
CGACCTTAGGCAGGTGTCCAGGTTGTGAATACATTGTATGCGTGCTTGCC
CGGGGCTGTATTTAGTGTCAAGTATGAGGAGGGCACATGAAGGAGACATC
GCCATGCTCCATGCTCGCCTTTTGGAGAAGTCCCCCTTCAACCCACAACA
GAAGCCTCAGTAGAGAGCCTGATATGTCGACTTCTCACCGTATCCACCCT
TCCCCCACAACACATAAGTGCAGGTCCTTTATAAATGAGGAACAATGCCC
TTCTCATCCTTCCCCTCCTCGTCCTCCTTCCCCTCCTTGTCCATGCTTTC
CGCCTCCCATCCACTTCCACTCCACCCTCCTCCCTCGTACCTCGTGCTGC
CTCTCCTAACGACGACGAGACCAATTCACCACCGCCCACGGTTGTAGACC
GACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCCCTTGGGTTTT
GATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGGCTACAACCAC
AAAATTTGCGGATCCCGTCCCCGGAGACAGGTGTGGAAAGGATTGAGGAA
TGAAAAAGAGGGGGCAGGCTGTTTTCGTTTTTAAATAATCGGCAAGGGCA
CTTGCATACCTTTCACTTCTCAGGACTCTCTTTCTTCCCCTCACTCCACA
GTCGGGACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAA
AAAGCCAAGCTTAACCTCATTTATGACGCTGCCAAGGACGGGTGGAAGAA
AGGAGACTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCTTGGTGGTGG
CCCGCACCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCGGAGGTATGG
AGGGATGGTGGGAAGAAGGGAGGGAGGAAGGACGGGCAGGGGAGGCAGTC
AAACACGTAATAATGACCTTCCAAAAACAAAATGGAGCCCTCCACAAATC
AACCACTCAATTTTCAATTCTTAACCTCCCCCTCTCTCCCACCCGCCCTC
CCTCCTTCATCCCGACCCCCCTCCACAGGGCTGGGAAGGCGTAGGCGACG
AGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTCAGGGCAAGATG
CTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGTGCCGACTACGC
GATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGGTGCGCCTCTTCTT
CCCTCCCTCCCTCCCTACATCCTACATCCTCCCTCCCTCCCTCCCCCCCT
CCCTCCCTCCCTAGATCGCTCCCCCTTTCTCGTCCTTTCTTTCTTCGTTT
CTGTGGTCCAAAATCAATGACTGGCAGTAGCTCATTTTCCTCCCTTCCTC
CCTCTCTCTCTCCCTCCCTCCCTCCCTCCGTCTCTCCCTCCTCTCTCTCT
CCCTCCCTCCTTTGTCGTTGGCAGCTACGAAGATTTCCTCCTCAAGCTGA
CCACAGACAGGAAAGCCGTCAGTAAATTAGGGCTGGCATACGCCAAGCTA
CCCGGAGGGGCTACGTCCCTCTTCGCGCCCTCAGAGGGCAAGACGGCCGA
GATCGTAGACTTGAAGGTGTATGCGCGGCAAGGAAGATGAGAGAGGGAGG
GATTTAGGGGGGAAGAAGATAGGCGTGCCTTAAGGGCAGGATACTAGAGA
GGGAAGGAGGC

Coding sequence (CDS) from alignment at scaffold_1:57020..58830-

>mRNA_1237 ID=mRNA_1237|Name=jgi.p|Nanoce1779_2|667223|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_1:57020..58830- (Nannochloropsis oceanica)
CTACGAAGATTTCCTCCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTA
AATTAGGGCTGGCATACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTC
GCGCCCTCAGAGGGCAAGACGGCCGAGATCGTAGACTTGAAGGTGTATGC
GCGGCAAGGAAGATGAGGCTGGGAAGGCGTAGGCGACGAGCGTCAGTGCA
TCTCAGCCTTCCTCTTCACGTGGCCTCAGGGCAAGATGCTGGCGGCTCGG
CCCATTAAGTGCCCTAAGGTGGGCGGTGCCGACTACGCGATAGACGATAA
CCCGTCTCTGGCCTTGAAATTCGGTCGGGACGTCGCGGCCCTTCGTCCTT
TGCTTGCTCAAACGCGCCTTGAAAAAGCCAAGCTTAACCTCATTTATGAC
GCTGCCAAGGACGGGTGGAAGAAAGGAGACTTTCACAGAAAAGTAGACAA
TAGAGGAGCTTCCTTGGTGGTGGCCCGCACCAGGGGAGGGGCAGTGTGTG
GCGGATATAACCCGGAGACCAATTCACCACCGCCCACGGTTGTAGACCGA
CTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCCCTTGGGTTTTGA
TCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGGCTACAACCACAA
AATTTGCGGATCCCGTCCCCGGAGACAGATGTCCGATCTCAAGAAAAAGA
AGTGGCTCAACTCAACCAAAATTATAACAAATAAAAAAGAGCAAGGCACC
CTCGGAATCGCGCTACGAAGATTTCCTCCTCAAGCTGACCACAGACAGGA
AAGCCGTCAGTAAATTAGGGCTGGCATACGCCAAGCTACCCGGAGGGGCT
ACGTCCCTCTTCGCGCCCTCAGAGGGCAAGACGGCCGAGATCGTAGACTT
GAAGGTGTATGCGCGGCAAGGAAGATGAGGCTGGGAAGGCGTAGGCGACG
AGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCTCAGGGCAAGATG
CTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGGTGCCGACTACGC
GATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGTCGGGACGTCGCGG
CCCTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAAAAAGCCAAGCTTAAC
CTCATTTATGACGCTGCCAAGGACGGGTGGAAGAAAGGAGACTTTCACAG
AAAAGTAGACAATAGAGGAGCTTCCTTGGTGGTGGCCCGCACCAGGGGAG
GGGCAGTGTGTGGCGGATATAACCCGGAGACCAATTCACCACCGCCCACG
GTTGTAGACCGACTTTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCC
CTTGGGTTTTGATCGCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGG
CTACAACCACAAAATTTGCGGATCCCGTCCCCGGAGACAGATGTCCGATC
TCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTATAACAAATAAAAAA
GAGCAAGGCACCCTCGGAATCGCGCTACGAAGATTTCCTCCTCAAGCTGA
CCACAGACAGGAAAGCCGTCAGTAAATTAGGGCTGGCATACGCCAAGCTA
CCCGGAGGGGCTACGTCCCTCTTCGCGCCCTCAGAGGGCAAGACGGCCGA
GATCGTAGACTTGAAGGTGTATGCGCGGCAAGGAAGATGAGGCTGGGAAG
GCGTAGGCGACGAGCGTCAGTGCATCTCAGCCTTCCTCTTCACGTGGCCT
CAGGGCAAGATGCTGGCGGCTCGGCCCATTAAGTGCCCTAAGGTGGGCGG
TGCCGACTACGCGATAGACGATAACCCGTCTCTGGCCTTGAAATTCGGTC
GGGACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACGCGCCTTGAAAAA
GCCAAGCTTAACCTCATTTATGACGCTGCCAAGGACGGGTGGAAGAAAGG
AGACTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCTTGGTGGTGGCCC
GCACCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCGGAGACCAATTCA
CCACCGCCCACGGTTGTAGACCGACTTTTCTCCCTCTTCTTCGGTGCAAA
AGAGGCCAAGCCCTTGGGTTTTGATCGCATCAGCGTGGAGAAAAGTCCCG
AGGTCTACCCGGCTACAACCACAAAATTTGCGGATCCCGTCCCCGGAGAC
AGATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCAACCAAAATTATA
ACAAATAAAAAAGAGCAAGGCACCCTCGGAATCGCGCTACGAAGATTTCC
TCCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTAAATTAGGGCTGGCA
TACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTCGCGCCCTCAGAGGG
CAAGACGGCCGAGATCGTAGACTTGAAGGTGTATGCGCGGCAAGGAAGAT
GAGGCTGGGAAGGCGTAGGCGACGAGCGTCAGTGCATCTCAGCCTTCCTC
TTCACGTGGCCTCAGGGCAAGATGCTGGCGGCTCGGCCCATTAAGTGCCC
TAAGGTGGGCGGTGCCGACTACGCGATAGACGATAACCCGTCTCTGGCCT
TGAAATTCGGTCGGGACGTCGCGGCCCTTCGTCCTTTGCTTGCTCAAACG
CGCCTTGAAAAAGCCAAGCTTAACCTCATTTATGACGCTGCCAAGGACGG
GTGGAAGAAAGGAGACTTTCACAGAAAAGTAGACAATAGAGGAGCTTCCT
TGGTGGTGGCCCGCACCAGGGGAGGGGCAGTGTGTGGCGGATATAACCCG
GAGACCAATTCACCACCGCCCACGGTTGTAGACCGACTTTTCTCCCTCTT
CTTCGGTGCAAAAGAGGCCAAGCCCTTGGGTTTTGATCGCATCAGCGTGG
AGAAAAGTCCCGAGGTCTACCCGGCTACAACCACAAAATTTGCGGATCCC
GTCCCCGGAGACAGATGTCCGATCTCAAGAAAAAGAAGTGGCTCAACTCA
ACCAAAATTATAACAAATAAAAAAGAGCAAGGCACCCTCGGAATCGCGCT
ACGAAGATTTCCTCCTCAAGCTGACCACAGACAGGAAAGCCGTCAGTAAA
TTAGGGCTGGCATACGCCAAGCTACCCGGAGGGGCTACGTCCCTCTTCGC
GCCCTCAGAGGGCAAGACGGCCGAGATCGTAGACTTGAAGGTGTATGCGC
GGCAAGGAAGATGAGGCTGGGAAGGCGTAGGCGACGAGCGTCAGTGCATC
TCAGCCTTCCTCTTCACGTGGCCTCAGGGCAAGATGCTGGCGGCTCGGCC
CATTAAGTGCCCTAAGGTGGGCGGTGCCGACTACGCGATAGACGATAACC
CGTCTCTGGCCTTGAAATTCGGTCGGGACGTCGCGGCCCTTCGTCCTTTG
CTTGCTCAAACGCGCCTTGAAAAAGCCAAGCTTAACCTCATTTATGACGC
TGCCAAGGACGGGTGGAAGAAAGGAGACTTTCACAGAAAAGTAGACAATA
GAGGAGCTTCCTTGGTGGTGGCCCGCACCAGGGGAGGGGCAGTGTGTGGC
GGATATAACCCGGAGACCAATTCACCACCGCCCACGGTTGTAGACCGACT
TTTCTCCCTCTTCTTCGGTGCAAAAGAGGCCAAGCCCTTGGGTTTTGATC
GCATCAGCGTGGAGAAAAGTCCCGAGGTCTACCCGGCTACAACCACAAAA
TTTGCGGATCCCGTCCCCGGAGACAGATGTCCGATCTCAAGAAAAAGAAG
TGGCTCAACTCAACCAAAATTATAACAAATAAAAAAGAGCAAGGCACCCT
CGGAATCGCG

Synonyms

Publications