jgi.p|Nanoce1779_2|571442, mRNA_1236 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571442
Unique NamemRNA_1236
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length654
Alignment locationscaffold_1:56190..56857 +

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Properties
Property NameValue
TranscriptId571528
TrackFilteredModels2
ProteinId571442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:56190..56857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571442gene_1236Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571442mRNA_1236-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1236CDS_1236Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1236 ID=mRNA_1236|Name=jgi.p|Nanoce1779_2|571442|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ATGGAATGAAGGAGGGAGGGAGGGAGGGAGGAAGAAAGGGAGGAAACGAA
GAAAGGAGGATGAAAGGATTTTGCCACCCTTCATCCGGGAGGGTAAGAGG
AGGAGGATGAGTTCGATGAGGAGGGAGGGAAGGAGGGCGACACGACGGAG
AGTTGAGGAGCACTTCCATTGAGAATGAATTTAGAAGGTATTCACAATCA
GGAAGACGAGAAGCGGAGAGTCAGACGCGCGGCCATAACGATAGGAAGGA
GGAGATGACGTCCCCGTGGCCGCCACCACCAGCACAGCCATTGCCACCAC
CACCACTCACCGAGAGAATGTTTGTGTTAATTGCGCGAAAGCGAGGGAGG
GAGGGAGGAAGGCCAAGGGATGGATATTTTGGGGATTGTGCCGTGCGATC
TCTTCTTTCTCCTTTCCCCCCATAATGTGTTTGTGTCTGTCTGCGTTCGC
ACTAGGTCTTGTGTGTGTGTGTGTGACGGGACGTATTTGTGCGATTCTGT
GTCGGTGTCTGAGAGTGGGAAGAGAAAGAGAAGGGAAAAGAGAGAAAAAA
AGCAACAAAAGGAAAATGAGTAAAGGAAGGAGAGAGAAAAAGAGGATTGC
AAGGGAGCAGAGGGAAGAGAAGAAGCAGGACAAGAAAAATCAAAAGAGAT
AGAA
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protein sequence of jgi.p|Nanoce1779_2|571442

>mRNA_1236-protein ID=mRNA_1236-protein|Name=jgi.p|Nanoce1779_2|571442|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MCLCLSAFALGLVCVCVTGRICAILCRCLRVGREREGKREKKSNKRKMSK
GRREKKRIAREQREEKKQDKKNQKR*
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mRNA from alignment at scaffold_1:56190..56857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1236 ID=mRNA_1236|Name=jgi.p|Nanoce1779_2|571442|organism=Nannochloropsis oceanica|type=mRNA|length=668bp|location=Sequence derived from alignment at scaffold_1:56190..56857+ (Nannochloropsis oceanica)
ATGGAATGAAGGAGGGAGGGAGGGAGGGAGGAAGAAAGGGAGGAAACGAA
GAAAGGAGGATGAAAGGATTTTGCCACCCTTCATCCGGGAGGGTAAGAGG
AGGAGGATGAGTTCGATGAGGAGGGAGGGAAGGAGGGCGACACGACGGAG
AGTTGAGGAGCACTTCCATTGAGAATGAATTTAGAAGGTATTCACAATCA
GGAAGACGAGAAGCGGAGAGTCAGACGCGCGGCCATAACGATAGGAAGGA
GGAGATGACGTCCCCGTGGCCGCCACCACCAGCACAGCCATTGCCACCAC
CACCACTCACCGAGAGAATGTTTGTGTTAATTGCGCGAAAGCGAGGGAGG
GAGGGAGGAAGGCCAAGGGATGGATATTTTGGGGATTGTGCCGTGCGATC
TCTTCTTTCTCCTTTCCCCCCATAATGTGTTTGTGTCTGTCTGCGTTCGC
ACTAGGTCTTGTGTGTGTGTGTGTGACGGGACGTATTTGTGCGATTCTGT
GTCGGTGTCTGTCTCTCGGTGTCTGAGAGTGGGAAGAGAAAGAGAAGGGA
AAAGAGAGAAAAAAAGCAACAAAAGGAAAATGAGTAAAGGAAGGAGAGAG
AAAAAGAGGATTGCAAGGGAGCAGAGGGAAGAGAAGAAGCAGGACAAGAA
AAATCAAAAGAGATAGAA
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Coding sequence (CDS) from alignment at scaffold_1:56190..56857+

>mRNA_1236 ID=mRNA_1236|Name=jgi.p|Nanoce1779_2|571442|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_1:56190..56857+ (Nannochloropsis oceanica)
ATGTGTTTGTGTCTGTCTGCGTTCGCACTAGGTCTTGTGTGTGTGTGTGT
GACGGGACGTATTTGTGCGATTCTGTGTCGGTGTCTGAGAGTGGGAAGAG
AAAGAGAAGGGAAAAGAGAGAAAAAAAGCAACAAAAGGAAAATGAGTAAA
GGAAGGAGAGAGAAAAAGAGGATTGCAAGGGAGCAGAGGGAAGAGAAGAA
GCAGGACAAGAAAAATCAAAAGAGATAGATGTGTTTGTGTCTGTCTGCGT
TCGCACTAGGTCTTGTGTGTGTGTGTGTGACGGGACGTATTTGTGCGATT
CTGTGTCGGTGTCTGAGAGTGGGAAGAGAAAGAGAAGGGAAAAGAGAGAA
AAAAAGCAACAAAAGGAAAATGAGTAAAGGAAGGAGAGAGAAAAAGAGGA
TTGCAAGGGAGCAGAGGGAAGAGAAGAAGCAGGACAAGAAAAATCAAAAG
AGATAG
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Synonyms
Publications