jgi.p|Nanoce1779_2|546, mRNA_1233 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546
Unique Name	mRNA_1233
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1869
Alignment location	scaffold_1:45020..47168 +

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Properties


Property Name	Value
TranscriptId	632
Track	FilteredModels2
ProteinId	546

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:45020..47168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546	gene_1233	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546	mRNA_1233-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1233	CDS_1233	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:45020..47168+
coding sequence from alignment at scaffold_1:45020..47168+

mRNA sequence

>mRNA_1233 ID=mRNA_1233|Name=jgi.p|Nanoce1779_2|546|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
CGACGGACGGGCGCGCGAACAACGAAGAGGTGATGGCCGCACTCCGTCAA
AGAGGAGGGCATTGGCCTTTTATCGTCGTCTATTTGGGCAGCGCTTGTCA
GTCCTGAGTTTCAGAGCAGGTTTGGCGTGTCTTGCTTGGTTATCACACTT
ACTTACAGTCTCCCACGGACAAGAAGGCGGTTCACGAGGGGCTTAGCGTG
CTTTTTACGGACTCCTCACATGAAATGCTGTTCTGGTCTTTACCTTTAGA
GACAGACACGCTAGCCTCCCCACCCCCCGCCCTCTCTCCCCTCTTCCATC
CTTCCCTCATCGGCGGCAGCCACAGCAGCAAAAAGAACAGTGTCCGCAAC
ATATGGCGCGTCCTGACCCAAGCACCACCAACGGTAAAGGCGGCAGCAGC
AGCAGCAGCCCGTTGGAAGCCGGAACCACCACTTTGACGGGCCGCCACGA
TGACAGCATCTGGAGTCTCGCATGGACAACCCACGGCCAACTCCTCTCCG
GCTCCGTTGACGAAACGGTCAAAGTGTGGTCTATCCCCCCTCTTTCCCCC
ACCTCCCTCTCGCCTTCCTCCCCTCCTTCCGCCCCTCCCTCCCTAACTCT
GGCACATACCCTGGGAGAGCACCGATTGGGCGTGGTGTCGGTGGCGGCCA
GCGGGCGGACGCCGGGGCTTGCGGTCAGTTGTTCTCTGGATTCGACTTTG
CGATTTTGGAATACATTGAATGGAGAGAAAGAGGGGTTGGGGGACGTGAA
AGCAGGGGCAGGAGAAGCGTGGACAGTCGCTTGGTCGCCCACCGCATCTC
TTGTTGCCAGCGGTACGCAGAGGGGCTGTGTGAATGTGTGGGAGGTGGGA
GGGATAGAGGAAGGGAGGGAGGGAGGAGTGGCGGTGCTCCCCTCAACGGT
GGCAATGACGTTAAAGACCCAGTCGGGCAAGACCGGAGGTGGGGGAGGAG
GGAAGGGTGGACGGAAGGAGGCCAGTGCACCGTTTATTTTCAGCGTGGCT
TTCTCGCCGGACGGGAGTAAATTGGCGTGTGGGGGGAGCGATGGCTTGGT
GTACGTTTTTGACGTGGAGACAGGAGCTTTGATAGCTTCCCTACAGGGAC
ACACCAAGCCCGTTCGCTCCCTAGCCTTCACACCCACCGGCTACGCCCTC
TTGAGCGCCTCGGACGACCAGCGGGTGAATGTTCATGAGCTCGCCTCGTC
CTCCTCCTTGCCTTCCTCCTCGACGGCCCGCCCTCCCTCCCTGGTGGCCA
CTTACGAGGGCCATGCGTCGTTTGTGCTGAGTGTAGCTGCCAGCCCTGAT
GGACGACACTTTGCCTCGGGTGGAGCAGACAGGAAGGTAAAGCTGTGGGA
TCTGGCAATGCGGGAATGTGTGCATACGGTGGAGAGACACGGGGAGGCAG
TATGGGCCTTGGCGTTTGAGCCGGATGGAAGGGGAGAGGGAGGGGGGGGG
GGAGAGGAGGTTGGCGAGTGGGGGGGAGGATGGGACGATGCTGGTGTTTG
GAGTAGGGGCGTATATAGGATAGAGGAGAGGGAGAAATGGAGGGGGAGGG
GGGGGGGGAGCAAGTCAAGAAAAATAGGGTGTCGATCGAAGCGGAAGTTG
CCGCTGGTGCTGGTGTGAGCCTGCCAGGGGCATGTCCTTGTTGTGTCGTT
TTCCTTCCTTCCATATTTTGAACCGTCGACCGTTCACATTCGAAAGAAAG
CTTTCCATTCTTTCTGTTTTTGCTACTGTTTCTACTCGCGCCGCCAGTGC
TGCTGCTGTTGCTGCTGCTGCTGCTTTGCCGCAAACGCTACAGCTGCTAC
CCCTTGCCTGCATCACTTGCTCGACTTTTCATATGCTTAATCCATTTCTC
CCCTCCTATAGGCGTCACG

protein sequence of jgi.p|Nanoce1779_2|546

>mRNA_1233-protein ID=mRNA_1233-protein|Name=jgi.p|Nanoce1779_2|546|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MARPDPSTTNGKGGSSSSSPLEAGTTTLTGRHDDSIWSLAWTTHGQLLSG
SVDETVKVWSIPPLSPTSLSPSSPPSAPPSLTLAHTLGEHRLGVVSVAAS
GRTPGLAVSCSLDSTLRFWNTLNGEKEGLGDVKAGAGEAWTVAWSPTASL
VASGTQRGCVNVWEVGGIEEGREGGVAVLPSTVAMTLKTQSGKTGGGGGG
KGGRKEASAPFIFSVAFSPDGSKLACGGSDGLVYVFDVETGALIASLQGH
TKPVRSLAFTPTGYALLSASDDQRVNVHELASSSSLPSSSTARPPSLVAT
YEGHASFVLSVAASPDGRHFASGGADRKVKLWDLAMRECVHTVERHGEAV
WALAFEPDGRGEGGGGGEEVGEWGGGWDDAGVWSRGVYRIEEREKWRGRG
GGSKSRKIGCRSKRKLPLVLV*

mRNA from alignment at scaffold_1:45020..47168+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1233 ID=mRNA_1233|Name=jgi.p|Nanoce1779_2|546|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp|location=Sequence derived from alignment at scaffold_1:45020..47168+ (Nannochloropsis oceanica)
CGACGGACGGGCGCGCGAACAACGAAGAGGTGATGGCCGCACTCCGTCAA
AGAGGAGGGCATTGGCCTTTTATCGTCGTCTATTTGGGCAGCGCTTGTCA
GTCCTGAGTTTCAGAGCAGGTTTGGCGTGTCTTGCTTGGTTATCACACTT
ACTTACAGTCTCCCACGGACAAGAAGGCGGTTCACGAGGGGCTTAGCGTG
CTTTTTACGGACTCCTCACATGAAATGCTGTTCTGGTCTTTACCTTTAGA
GACAGACACGGTATGACCTCGTGGTATATGATATGTATAAGCATACATGT
ATGCTTCAGCTCATGAGCTCACAGCATAATTCTCCCCGCATGGCTTTTTT
TCCCCGACTGGCACAACACAGCTAGCCTCCCCACCCCCCGCCCTCTCTCC
CCTCTTCCATCCTTCCCTCATCGGCGGCAGCCACAGCAGCAAAAAGAACA
GTGTCCGCAACATATGGTAAGACCAGCAGCAATATTCCCTCCATCCCCCC
ACCCCCACGCATACATCCTCAACCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGAAAGGCGCGTCCTGACCCA
AGCACCACCAACGGTAAAGGCGGCAGCAGCAGCAGCAGCCCGTTGGAAGC
CGGAACCACCACTTTGACGGGCCGCCACGATGACAGCATCTGGAGTCTCG
CATGGACAACCCACGGCCAACTCCTCTCCGGCTCCGTTGACGAAACGGTC
AAAGTGTGGTCTATCCCCCCTCTTTCCCCCACCTCCCTCTCGCCTTCCTC
CCCTCCTTCCGCCCCTCCCTCCCTAACTCTGGCACATACCCTGGGAGAGC
ACCGATTGGGCGTGGTGTCGGTGGCGGCCAGCGGGCGGACGCCGGGGCTT
GCGGTCAGTTGTTCTCTGGATTCGACTTTGCGATTTTGGAATACATTGAA
TGGAGAGAAAGAGGGGTTGGGGGACGTGAAAGCAGGGGCAGGAGAAGCGT
GGACAGTCGCTTGGTCGCCCACCGCATCTCTTGTTGCCAGCGGTACGCAG
AGGGGCTGTGTGAATGTGTGGGAGGTGGGAGGGATAGAGGAAGGGAGGGA
GGGAGGAGTGGCGGTGCTCCCCTCAACGGTGGCAATGACGTTAAAGACCC
AGTCGGGCAAGACCGGAGGTGGGGGAGGAGGGAAGGGTGGACGGAAGGAG
GCCAGTGCACCGTTTATTTTCAGCGTGGCTTTCTCGCCGGACGGGAGTAA
ATTGGCGTGTGGGGGGAGCGATGGCTTGGTGTACGTTTTTGACGTGGAGA
CAGGAGCTTTGATAGCTTCCCTACAGGGACACACCAAGCCCGTTCGCTCC
CTAGCCTTCACACCCACCGGCTACGCCCTCTTGAGCGCCTCGGACGACCA
GCGGGTGAATGTTCATGAGCTCGCCTCGTCCTCCTCCTTGCCTTCCTCCT
CGACGGCCCGCCCTCCCTCCCTGGTGGCCACTTACGAGGGCCATGCGTCG
TTTGTGCTGAGTGTAGCTGCCAGCCCTGATGGACGACACTTTGCCTCGGG
TGGAGCAGACAGGAAGGTAAAGCTGTGGGATCTGGCAATGCGGGAATGTG
TGCATACGGTGGAGAGACACGGGGAGGCAGTATGGGCCTTGGCGTTTGAG
CCGGATGGAAGGGGAGAGGGAGGGGGGGGGGGAGAGGAGGTTGGCGAGTG
GGGGGGAGGATGGGACGATGCTGGTGTTTGGAGTAGGGGCGTATATAGGA
TAGAGGAGAGGGAGAAATGGAGGGGGAGGGGGGGGGGGAGCAAGTCAAGA
AAAATAGGGTGTCGATCGAAGCGGAAGTTGCCGCTGGTGCTGGTGTGAGC
CTGCCAGGGGCATGTCCTTGTTGTGTCGTTTTCCTTCCTTCCATATTTTG
AACCGTCGACCGTTCACATTCGAAAGAAAGCTTTCCATTCTTTCTGTTTT
TGCTACTGTTTCTACTCGCGCCGCCAGTGCTGCTGCTGTTGCTGCTGCTG
CTGCTTTGCCGCAAACGCTACAGCTGCTACCCCTTGCCTGCATCACTTGC
TCGACTTTTCATATGCTTAATCCATTTCTCCCCTCCTATAGGCGTCACG

Coding sequence (CDS) from alignment at scaffold_1:45020..47168+

>mRNA_1233 ID=mRNA_1233|Name=jgi.p|Nanoce1779_2|546|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_1:45020..47168+ (Nannochloropsis oceanica)
ATGGCGCGTCCTGACCCAAGCACCACCAACGGTAAAGGCGGCAGCAGCAG
CAGCAGCCCGTTGGAAGCCGGAACCACCACTTTGACGGGCCGCCACGATG
ACAGCATCTGGAGTCTCGCATGGACAACCCACGGCCAACTCCTCTCCGGC
TCCGTTGACGAAACGGTCAAAGTGTGGTCTATCCCCCCTCTTTCCCCCAC
CTCCCTCTCGCCTTCCTCCCCTCCTTCCGCCCCTCCCTCCCTAACTCTGG
CACATACCCTGGGAGAGCACCGATTGGGCGTGGTGTCGGTGGCGGCCAGC
GGGCGGACGCCGGGGCTTGCGGTCAGTTGTTCTCTGGATTCGACTTTGCG
ATTTTGGAATACATTGAATGGAGAGAAAGAGGGGTTGGGGGACGTGAAAG
CAGGGGCAGGAGAAGCGTGGACAGTCGCTTGGTCGCCCACCGCATCTCTT
GTTGCCAGCGGTACGCAGAGGGGCTGTGTGAATGTGTGGGAGGTGGGAGG
GATAGAGGAAGGGAGGGAGGGAGGAGTGGCGGTGCTCCCCTCAACGGTGG
CAATGACGTTAAAGACCCAGTCGGGCAAGACCGGAGGTGGGGGAGGAGGG
AAGGGTGGACGGAAGGAGGCCAGTGCACCGTTTATTTTCAGCGTGGCTTT
CTCGCCGGACGGGAGTAAATTGGCGTGTGGGGGGAGCGATGGCTTGGTGT
ACGTTTTTGACGTGGAGACAGGAGCTTTGATAGCTTCCCTACAGGGACAC
ACCAAGCCCGTTCGCTCCCTAGCCTTCACACCCACCGGCTACGCCCTCTT
GAGCGCCTCGGACGACCAGCGGGTGAATGTTCATGAGCTCGCCTCGTCCT
CCTCCTTGCCTTCCTCCTCGACGGCCCGCCCTCCCTCCCTGGTGGCCACT
TACGAGGGCCATGCGTCGTTTGTGCTGAGTGTAGCTGCCAGCCCTGATGG
ACGACACTTTGCCTCGGGTGGAGCAGACAGGAAGGTAAAGCTGTGGGATC
TGGCAATGCGGGAATGTGTGCATACGGTGGAGAGACACGGGGAGGCAGTA
TGGGCCTTGGCGTTTGAGCCGGATGGAAGGGGAGAGGGAGGGGGGGGGGG
AGAGGAGGTTGGCGAGTGGGGGGGAGGATGGGACGATGCTGGTGTTTGGA
GTAGGGGCGTATATAGGATAGAGGAGAGGGAGAAATGGAGGGGGAGGGGG
GGGGGGAGCAAGTCAAGAAAAATAGGGTGTCGATCGAAGCGGAAGTTGCC
GCTGGTGCTGGTGTGAATGGCGCGTCCTGACCCAAGCACCACCAACGGTA
AAGGCGGCAGCAGCAGCAGCAGCCCGTTGGAAGCCGGAACCACCACTTTG
ACGGGCCGCCACGATGACAGCATCTGGAGTCTCGCATGGACAACCCACGG
CCAACTCCTCTCCGGCTCCGTTGACGAAACGGTCAAAGTGTGGTCTATCC
CCCCTCTTTCCCCCACCTCCCTCTCGCCTTCCTCCCCTCCTTCCGCCCCT
CCCTCCCTAACTCTGGCACATACCCTGGGAGAGCACCGATTGGGCGTGGT
GTCGGTGGCGGCCAGCGGGCGGACGCCGGGGCTTGCGGTCAGTTGTTCTC
TGGATTCGACTTTGCGATTTTGGAATACATTGAATGGAGAGAAAGAGGGG
TTGGGGGACGTGAAAGCAGGGGCAGGAGAAGCGTGGACAGTCGCTTGGTC
GCCCACCGCATCTCTTGTTGCCAGCGGTACGCAGAGGGGCTGTGTGAATG
TGTGGGAGGTGGGAGGGATAGAGGAAGGGAGGGAGGGAGGAGTGGCGGTG
CTCCCCTCAACGGTGGCAATGACGTTAAAGACCCAGTCGGGCAAGACCGG
AGGTGGGGGAGGAGGGAAGGGTGGACGGAAGGAGGCCAGTGCACCGTTTA
TTTTCAGCGTGGCTTTCTCGCCGGACGGGAGTAAATTGGCGTGTGGGGGG
AGCGATGGCTTGGTGTACGTTTTTGACGTGGAGACAGGAGCTTTGATAGC
TTCCCTACAGGGACACACCAAGCCCGTTCGCTCCCTAGCCTTCACACCCA
CCGGCTACGCCCTCTTGAGCGCCTCGGACGACCAGCGGGTGAATGTTCAT
GAGCTCGCCTCGTCCTCCTCCTTGCCTTCCTCCTCGACGGCCCGCCCTCC
CTCCCTGGTGGCCACTTACGAGGGCCATGCGTCGTTTGTGCTGAGTGTAG
CTGCCAGCCCTGATGGACGACACTTTGCCTCGGGTGGAGCAGACAGGAAG
GTAAAGCTGTGGGATCTGGCAATGCGGGAATGTGTGCATACGGTGGAGAG
ACACGGGGAGGCAGTATGGGCCTTGGCGTTTGAGCCGGATGGAAGGGGAG
AGGGAGGGGGGGGGGGAGAGGAGGTTGGCGAGTGGGGGGGAGGATGGGAC
GATGCTGGTGTTTGGAGTAGGGGCGTATATAGGATAGAGGAGAGGGAGAA
ATGGAGGGGGAGGGGGGGGGGGAGCAAGTCAAGAAAAATAGGGTGTCGAT
CGAAGCGGAAGTTGCCGCTGGTGCTGGTGTGA

Synonyms

Publications