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Properties
| Property Name | Value |
|---|
| TranscriptId | 626707 |
| Track | FilteredModels2 |
| ProteinId | 626621 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:27712..30101 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1231 ID=mRNA_1231|Name=jgi.p|Nanoce1779_2|626621|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ATGCAGGTGCTGTCGCTGCAGCTGATCACAGGCGCAGCCACGAGAGAGAA
TGAAGAAAAGCAAATCCGCAAGGAAGAAAACGTCTTTCATGCTACCAACG
AATGGCAGCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTG
AAGCTGGATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTGGACGCGGA
CGAGACAGCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCA
CTTCCTCAACTTTCATACCCCCCAACCAGAACAAGTCACAGAATGGAGGA
GGGCTGCTTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGA
CACGGCCAGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCA
TCTCCAACCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTC
CTTGCCACTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTT
TTGGCAGAAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGC
AGGCATATGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATA
CAGGTGCTGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATT
GATAGAATTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTT
ATACCTTGGGCGGGTGGCCTTTATTGGTGGGTAGGCTAGGGAGGGGGGGA
GGGAAGGAGGTGAGGTGGAGAGCGGCGTGGGCGGTGGGAAATGCGGTGAA
GAATGATAGGGGATTTCAGGGATGGGTTTTGGAGAGAGGGAAGGAGGGAG
AGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCG
GAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAG
GAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGC
AATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTC
GCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACGGCGGGCTCTTCG
ATTGAAGCTTGTTGCCTTTGCTCACGACATGATACTGGAGGCCAGACAAG
GACAGGAAGCCACGTGGGAGGTAGAGGAGGCGCGACATCCTCCCTCCCCC
CCCCCCTCCCTCCATGCCTCCCTTTTGGAAGGAGTGACGACGCCGACCTG
GTGCCAGGGGGCGTTGGTCTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGA
AGGGGGGAGGGAGTACAGGGGCGCAGGCGGTGGAGACGGAAAAGGTGGTG
GAGGCCTTAGGACTTTTGCACGGTGGGTGCAGTGGGCACGGGCATTGGGG
CGGAAGGGATGTGGTGGGGAGGGTGGTTAGGAGAGCAAGGGAGGAGGTAG
GGCGGGAGAGGTGGGCGGAGGGAGTCAACCCCGAATACCACCAGGAGTTG
TTGGGGATGCTGGAAGAGCTGGCAAGGGAAGTAGAGGGGGAAAGGGGGGG
GGAAGCAGGGAGGGAAAGGGTGGAGTTGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|626621 >mRNA_1231-protein ID=mRNA_1231-protein|Name=jgi.p|Nanoce1779_2|626621|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MQVLSLQLITGAATRENEEKQIRKEENVFHATNEWQPIPRDASVPPGLHV
KLDLSTGERLGKLLDADETAQAAATGAAGTAVSTSSTFIPPNQNKSQNGG
GLLDSITIKNTPEEALDTASGPLPTRRETMLKVISNLPPVERASMGVDAL
LATRPPDLSHPEEEEVFWQKVEGLWEERQAMLQQAYDNMLKPAEELGRLI
QVLREGAGEEGLLLQALIELEDWLSDVDMAQDFYTLGGWPLLVGRLGRGG
GKEVRWRAAWAVGNAVKNDRGFQGWVLERGKEGEGDSALTLLVEILREAA
EGGVEGEEREHGEELLRKTVYALTSAARGNALVQSQLLKEGGLEVMGRLL
ASSPSSSSSSSGRRALRLKLVAFAHDMILEARQGQEATWEVEEARHPPSP
PPSLHASLLEGVTTPTWCQGALVLLEEVAREGGKGGGSTGAQAVETEKVV
EALGLLHGGCSGHGHWGGRDVVGRVVRRAREEVGRERWAEGVNPEYHQEL
LGMLEELAREVEGERGGEAGRERVEL* back to topmRNA from alignment at scaffold_1:27712..30101- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1231 ID=mRNA_1231|Name=jgi.p|Nanoce1779_2|626621|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at scaffold_1:27712..30101- (Nannochloropsis oceanica)
ATGCAGGTGCTGTCGCTGCAGCTGATCACAGGGTTAGGTGGGAAGAGAAG
GGGTGGGGAGATGGGAGAGGTAAGATATGCGGACATTCTATGTGTAGCCT
TCCCGCTGTCCTCTTCTTTTATCCTCCTTCCCCTTCTCCTCCTGGCCCTG
TGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAAATCTGTCAAAGTCGCT
AGTAAAACTCGGACAAGGAATAAGGGATGAATCGGTAACATTTTATTGTT
GGAAGGCTCCCCCTCGTGTGCAAGTCCTAGAGGACGCAGGTTGCACGCGA
TAGTTTTAGAGGGATGTAGGAACGGCAAAAAAGAACTAAGTCATAGTAGT
CGTATGGTACGTATGGTATGGTCGTATGGTATGTTCCCTCGTGAGTTGGC
GAGGCCACCAACGGCAGCAACCCTTCCCAAAGAAGGAAGCTCTTCACTCG
TGCATTCATTCTCCATCTCACTAGCACACCACCACAGGCATATTTCTCTC
TGTTGTCTCGATAAACAGTGTTCTCGTGTTTTCCTGGTGTCAGTGCTGCC
ATCTTCTCCTGCCTGTGTCTTTTAAAAGTCAGCAATTCCTTCTTCCATAG
CCCCCCATTGTTGCTCATCTTTCACGACCCGACTGCACACATCACAAGAG
ATCCTCATCCTCCTCCTATTCACTGCAATGACCTATATCCCACAGCAGAT
ACCTACTAGCATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTC
GCAACACAGTCCTCGTCGTCCTCTCCACCCTCTCCAGCTACTCCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTACCCTCCCCCACCAGCGCAGCCAC
GAGAGAGAATGAAGAAAAGCAAATCCGCAAGGAAGAAAACGTCTTTCATG
CTACCAACGAATGGCAGCCCATCCCACGCGATGCATCGGTCCCTCCAGGG
TTGCACGTGAAGCTGGATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCT
GGACGCGGACGAGACAGCACAAGCAGCAGCAACAGGAGCTGCTGGAACTG
CCGTCAGCACTTCCTCAACTTTCATACCCCCCAACCAGAACAAGTCACAG
AATGGAGGAGGGCTGCTTGATAGCATTACCATCAAAAACACCCCGGAAGA
GGCCTTGGACACGGCCAGTGGCCCCCTTCCCACTCGCCGGGAAACCATGC
TCAAAGTCATCTCCAACCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTC
GATGCCCTCCTTGCCACTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGA
AGAAGTGTTTTGGCAGAAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGA
TGCTGCAGCAGGCATATGACAACATGCTCAAGCCCGCGGAGGAACTGGGG
AGGTTGATACAGGTGCTGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACT
ACAAGCATTGATAGAATTGGAAGACTGGTTGTCGGATGTGGACATGGCTC
AGGACTTTTATACCTTGGGCGGGTGGCCTTTATTGGTGGGTAGGCTAGGG
AGGGGGGGAGGGAAGGAGGTGAGGTGGAGAGCGGCGTGGGCGGTGGGAAA
TGCGGTGAAGAATGATAGGGGATTTCAGGGATGGGTTTTGGAGAGAGGGA
AGGAGGGAGAGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGG
GAGGCGGCGGAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGA
GTTGTTGAGGAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACG
CTTTGGTGCAATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGT
CGCCTCCTCGCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACGGCG
GGCTCTTCGATTGAAGCTTGTTGCCTTTGCTCACGACATGATACTGGAGG
CCAGACAAGGACAGGAAGCCACGTGGGAGGTAGAGGAGGCGCGACATCCT
CCCTCCCCCCCCCCCTCCCTCCATGCCTCCCTTTTGGAAGGAGTGACGAC
GCCGACCTGGTGCCAGGGGGCGTTGGTCTTGCTGGAGGAGGTGGCGAGGG
AGGGAGGGAAGGGGGGAGGGAGTACAGGGGCGCAGGCGGTGGAGACGGAA
AAGGTGGTGGAGGCCTTAGGACTTTTGCACGGTGGGTGCAGTGGGCACGG
GCATTGGGGCGGAAGGGATGTGGTGGGGAGGGTGGTTAGGAGAGCAAGGG
AGGAGGTAGGGCGGGAGAGGTGGGCGGAGGGAGTCAACCCCGAATACCAC
CAGGAGTTGTTGGGGATGCTGGAAGAGCTGGCAAGGGAAGTAGAGGGGGA
AAGGGGGGGGGAAGCAGGGAGGGAAAGGGTGGAGTTGTAG back to topCoding sequence (CDS) from alignment at scaffold_1:27712..30101- >mRNA_1231 ID=mRNA_1231|Name=jgi.p|Nanoce1779_2|626621|organism=Nannochloropsis oceanica|type=CDS|length=3162bp|location=Sequence derived from alignment at scaffold_1:27712..30101- (Nannochloropsis oceanica)
CGCAGCCACGAGAGAGAATGAAGAAAAGCAAATCCGCAAGGAAGAAAACG
TCTTTCATGCTACCAACGAATGGCAGCCCATCCCACGCGATGCATCGGTC
CCTCCAGGGTTGCACGTGAAGCTGGATTTGTCGACGGGCGAGAGACTGGG
CAAGCTCCTGGACGCGGACGAGACAGCACAAGCAGCAGCAACAGGAGCTG
CTGGAACTGCCGTCAGCACTTCCTCAACTTTCATACCCCCCAACCAGAAC
AAGTCACAGAATGGAGGAGGGCTGCTTGATAGCATTACCATCAAAAACAC
CCCGGAAGAGGCCTTGGACACGGCCAGTGGCCCCCTTCCCACTCGCCGGG
AAACCATGCTCAAAGTCATCTCCAACCTCCCCCCTGTCGAGCGCGCCAGC
ATGGGTGTCGATGCCCTCCTTGCCACTCGTCCTCCTGACTTGTCGCACCC
CGAAGAAGAAGAAGTGTTTTGGCAGAAGGTGGAGGGTTTGTGGGAGGAAA
GGCAAGCGATGCTGCAGCAGGCATATGACAACATGCTCAAGCCCGCGGAG
GAACTGGGGAGGTTGATACAGGTGCTGAGGGAGGGAGCTGGGGAGGAAGG
GTTGCTACTACAAGCATTGATAGAATTGGAAGACTGGTTGTCGGATGTGG
ACATGGCTCAGGACTTTTATACCTTGGGCGGGTGGCCTTTATTGGTGGGT
AGGCTAGGGAGGGGGGGAGGGAAGGAGGTGAGGTGGAGAGCGGCGTGGGC
GGTGGGAAATGCGGTGAAGAATGATAGGGGATTTCAGGGATGGGTTTTGG
AGAGAGGGAAGGAGGGAGAGGGGGACTCTGCGTTGACGCTTTTGGTGGAA
ATACTGCGGGAGGCGGCGGAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCA
CGGGGAGGAGTTGTTGAGGAAGACCGTATATGCCTTGACATCGGCAGCAA
GGGGAAACGCTTTGGTGCAATCCCAATTGCTCAAGGAGGGGGGGTTGGAG
GTCATGGGTCGCCTCCTCGCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAG
TGGACGGCGGGCTCTTCGATTGAAGCTTGTTGCCTTTGCTCACGACATGA
TACTGGAGGCCAGACAAGGACAGGAAGCCACGTGGGAGGTAGAGGAGGCG
CGACATCCTCCCTCCCCCCCCCCCTCCCTCCATGCCTCCCTTTTGGAAGG
AGTGACGACGCCGACCTGGTGCCAGGGGGCGTTGGTCTTGCTGGAGGAGG
TGGCGAGGGAGGGAGGGAAGGGGGGAGGGAGTACAGGGGCGCAGGCGGTG
GAGACGGAAAAGGTGGTGGAGGCCTTAGGACTTTTGCACGGTGGGTGCAG
TGGGCACGGGCATTGGGGCGGAAGGGATGTGGTGGGGAGGGTGGTTAGGA
GAGCAAGGGAGGAGGTAGGGCGGGAGAGGTGGGCGGAGGGAGTCAACCCC
GAATACCACCAGGAGTTGTTGGGGATGCTGGAAGAGCTGGCAAGGGAAGT
AGAGGGGGAAAGGGGGGGGGAAGCAGGGAGGGAAAGGGTGGAGTTGTAGA
TGCAGGTGCTGTCGCTGCAGCTGATCACAGGCGCAGCCACGAGAGAGAAT
GAAGAAAAGCAAATCCGCAAGGAAGAAAACGTCTTTCATGCTACCAACGA
ATGGCAGCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGA
AGCTGGATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTGGACGCGGAC
GAGACAGCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCAC
TTCCTCAACTTTCATACCCCCCAACCAGAACAAGTCACAGAATGGAGGAG
GGCTGCTTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGAC
ACGGCCAGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCAT
CTCCAACCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCC
TTGCCACTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTT
TGGCAGAAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCA
GGCATATGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATAC
AGGTGCTGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTG
ATAGAATTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTA
TACCTTGGGCGGGTGGCCTTTATTGGTGGGTAGGCTAGGGAGGGGGGGAG
GGAAGGAGGTGAGGTGGAGAGCGGCGTGGGCGGTGGGAAATGCGGTGAAG
AATGATAGGGGATTTCAGGGATGGGTTTTGGAGAGAGGGAAGGAGGGAGA
GGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCGG
AGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAGG
AAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGCA
ATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTCG
CCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACGGCGGGCTCTTCGA
TTGAAGCTTGTTGCCTTTGCTCACGACATGATACTGGAGGCCAGACAAGG
ACAGGAAGCCACGTGGGAGGTAGAGGAGGCGCGACATCCTCCCTCCCCCC
CCCCCTCCCTCCATGCCTCCCTTTTGGAAGGAGTGACGACGCCGACCTGG
TGCCAGGGGGCGTTGGTCTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAA
GGGGGGAGGGAGTACAGGGGCGCAGGCGGTGGAGACGGAAAAGGTGGTGG
AGGCCTTAGGACTTTTGCACGGTGGGTGCAGTGGGCACGGGCATTGGGGC
GGAAGGGATGTGGTGGGGAGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGG
GCGGGAGAGGTGGGCGGAGGGAGTCAACCCCGAATACCACCAGGAGTTGT
TGGGGATGCTGGAAGAGCTGGCAAGGGAAGTAGAGGGGGAAAGGGGGGGG
GAAGCAGGGAGGGAAAGGGTGGAGTTGTAGATGCAGGTGCTGTCGCTGCA
GCTGATCACAGG back to top
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