jgi.p|Nanoce1779_2|667216, mRNA_1229 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667216
Unique Name	mRNA_1229
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1666
Alignment location	scaffold_1:24559..26781 -

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Properties


Property Name	Value
TranscriptId	667302
Track	FilteredModels2
ProteinId	667216

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:24559..26781 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667216	gene_1229	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667216	mRNA_1229-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1229	CDS_1229	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:24559..26781-
coding sequence from alignment at scaffold_1:24559..26781-

mRNA sequence

>mRNA_1229 ID=mRNA_1229|Name=jgi.p|Nanoce1779_2|667216|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
AAGATCGTTGTTGTCCCTACTACCATTGCTGCTGCTGCTGCTGTTGTTGC
TGCTGTTGTTGTGTTTTTGATTTTGTCCTTTCGCACGAAGCCGGGCTAGA
TACTTGTTGCGGACATCTGCGGTGGGGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGAGGCGGAGAAGGTGGAGGAGGGAAAGGGAAAGAGGGAATGAGCAG
GGGCTCCAGGAAAGCAGACAGGGTCAAGGGAAGAGGCAGTAGATGTGACG
GTAGAGGAGGAAGCTATTGTGGCAGAGGAAAATGCCTCACGTGGATCCCT
CCCTCCCCCTCCTCCAGACTCAAACCCCGTCACCCCCAAAGTCCTTGCCA
GTGTGCTGATCATGTCCGTCTTTCCCTCCGCCTCCTGCTGCTGCGTTTGC
GATCCCAGTTCGCCTCCCCTCCCCACCGCCCCCCCTCCTCTTTCTCCAGC
GAAACCAGATCCAAACATCTCCAAGCGAATGCGTCGTTCCAATTCGTCCT
CAGGGAGGAGTGGCCGTTGTCGGGAAGATAGCGCAGATGAATCAACACCC
GCAGCAGGGGTAGCTGTGCGAACCAAGGGCAAACCGCCGCTACTCAGGCG
GAGCAGCAGGGATAGATCGAGAATTACGCCTTTGATTAGGGTAGGACGAC
CCATGGTAATGGTTGTAGTACTGAAGGCGATGGAAGGTGGGAGGAGAGCG
CAGGATGGCGCGGGGTGCGCCTGGTATCGTTTGTTGTGGTTTGGAAGAAG
GGAACAAGGGTAAGGATCACTGAGATGGACATAGAGAAAGGAAAGGAGAG
TGTGTGCTGAGGTGTGTCTGATGCAAAACACTGCCTCTACCAGAGAAAAC
ATGCCATCCCATGACAACTACCACGGTTCATTCTCAATTGAGAATAATGC
CATCCAGCACGCTGAGAACATCAAGCTCCAGCACGTGGCTGAAAGCTTAG
AACATGACAAATCTCGTGTCTCAGACCTCTACGAGCAAGCTGCCCGTTAC
AAAGCCCGCAGCACCGTGCTGGACCGGGATCTCGTGCTTTTACGTGCCCA
GGTTGAAGAGCTGTCGGTAGAGGTTTCGACGTTGTCGGGTCGCATCGCCC
AAGAATACGAAACCCTTGCGCAGCTACACAAGATGGAAGTCGAGCTAGAA
AAAGAACATAAGCAAAACACGGCGAAGCTGCAGGAGTTTGAGGCGGCCTG
TCAAGAGAGGAATTCGGAGAAAGAGAGGATGATGGCGAGGGTGGCACGGG
AGCAGCGGGCTTGGAATAAAGGGTTGATGGTAGTGGAAAAGAAGGCGCGT
GAGTTGCTAAAAAGCCCCATAGGTGTGACAAAGCTGAAGGAAAGGAAGGT
GAGGGCGTGGGGGAAGCGGGAGGAAGTCCGGGGCCGTGTTGAGACGATTC
ACCGGGAGTTGGAGGAGGTGAACCGAGCCTGGGAAGCAGAGCAGGAAACA
AAGCGGCAGGAGCAGCAGCAGGAGCAGCAACAGTGGCGGCTGGAGGGAGA
GGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCGCACGGGTG
TTGGAGGGGGAGGGAAGGAGAGGCAGCATTGGCGAGAACTGGGTCGTTTG
CAGGAGCTCCAGCGGGTGCTGAGGGAAGAAGGAGCGGTGTTAGATCGTAA
AATTACCGTGGCATGA

protein sequence of jgi.p|Nanoce1779_2|667216

>mRNA_1229-protein ID=mRNA_1229-protein|Name=jgi.p|Nanoce1779_2|667216|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MQNTASTRENMPSHDNYHGSFSIENNAIQHAENIKLQHVAESLEHDKSRV
SDLYEQAARYKARSTVLDRDLVLLRAQVEELSVEVSTLSGRIAQEYETLA
QLHKMEVELEKEHKQNTAKLQEFEAACQERNSEKERMMARVAREQRAWNK
GLMVVEKKARELLKSPIGVTKLKERKVRAWGKREEVRGRVETIHRELEEV
NRAWEAEQETKRQEQQQEQQQWRLEGEEEGEEEEEEEEEVRTGVGGGGKE
RQHWRELGRLQELQRVLREEGAVLDRKITVA*

mRNA from alignment at scaffold_1:24559..26781-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1229 ID=mRNA_1229|Name=jgi.p|Nanoce1779_2|667216|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp|location=Sequence derived from alignment at scaffold_1:24559..26781- (Nannochloropsis oceanica)
AAGATCGTTGTTGTCCCTACTACCATTGCTGCTGCTGCTGCTGTTGTTGC
TGCTGTTGTTGTGTTTTTGATTTTGTCCTTTCGCACGAAGCCGGGCTAGA
TACTTGTTGCGGACATCTGCGGTGGGGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGAGGCGGAGAAGGTGGAGGAGGGAAAGGGAAAGAGGGAATGAGCAG
GGGCTCCAGGAAAGCAGACAGGGTCAAGGGAAGAGGCAGTAGATGTGACG
GTAGAGGAGGAAGCTATTGTGGCAGAGGAAAATGCCTCACGTGGATCCCT
CCCTCCCCCTCCTCCAGACTCAAACCCCGTCACCCCCAAAGTCCTTGCCA
GTGTGCTGATCATGTCCGTCTTTCCCTCCGCCTCCTGCTGCTGCGTTTGC
GATCCCAGTTCGCCTCCCCTCCCCACCGCCCCCCCTCCTCTTTCTCCAGC
GAAACCAGATCCAAACATCTCCAAGCGAATGCGTCGTTCCAATTCGTCCT
CAGGGAGGAGTGGCCGTTGTCGGGAAGATAGCGCAGATGAATCAACACCC
GCAGCAGGGGTAGCTGTGCGAACCAAGGGCAAACCGCCGCTACTCAGGCG
GAGCAGCAGGGATAGATCGAGAATTACGCCTTTGATTAGGGTAGGACGAC
CCATGGTAATGGTTGTAGTACTGAAGGCGATGGAAGGTGGGAGGAGAGCG
CAGGATGGCGCGGGGTGCGCCTGGTATCGTTTGTTGTGGTTTGGAAGAAG
GGAACAAGGGTAAGGATCACTGAGATGGACATAGAGAAAGGAAAGGAGAG
TGTGTGCTGAGGTGTGTCTGATGGTGAGTACTCTCAAGAGATTATTCAAG
CGAACGCATGCGTCATTCTCGCTCATCGCTGGAGGGGCGCGCGATACGCT
CCCTTCTACGAACATAATCACAAACGCATATACATATATATCAGCTTCGT
TCCACAATCCTCGATCATCATGTCCTCCTCATCATGTACACTCTGCTGAC
CATATGTCTAACTCCAGCTTCCCATTTTTCTCTCTCCTTCTCCTCATGCT
TGTTCATGCTTCCTCTTCCCCGCGTAGTACCCCCCAACCATCTCCTCATG
CTTGGCTCCTCGTGCTCTTTCCATAGTATCAGCAGTCCTAGCGGCGGCAA
CAGCCTCGCCATCTTTCTGACTATCTGTTATCCTCATTTTCGTGCCTTCC
TTCCACCACCTCGCCTTACGACCTCTTCCTTCCTTGCTTCCCCTCCTCAC
TCCTCACAAACACATACGAAACAGCAAAACACTGCCTCTACCAGAGAAAA
CATGCCATCCCATGACAACTACCACGGTTCATTCTCAATTGAGAATAATG
CCATCCAGCACGCTGAGAACATCAAGCTCCAGCACGTGGCTGAAAGTAAG
TAGAAGGAAAGAAAATGGGAAAGGGGGGGATGGGAAGACGACGATGCCAT
GGACTGACTCCGATCTTCCTCCCTTCGTTCCCTCCATATCCCCTATTTCA
GGCTTAGAACATGACAAATCTCGTGTCTCAGACCTCTACGAGCAAGCTGC
CCGTTACAAAGCCCGCAGCACCGTGCTGGACCGGGATCTCGTGCTTTTAC
GTGCCCAGGTTGAAGAGCTGTCGGTAGAGGTTTCGACGTTGTCGGGTCGC
ATCGCCCAAGAATACGAAACCCTTGCGCAGCTACACAAGATGGAAGTCGA
GCTAGAAAAAGAACATAAGCAAAACACGGCGAAGCTGCAGGAGTTTGAGG
CGGCCTGTCAAGAGAGGAATTCGGAGAAAGAGAGGATGATGGCGAGGGTG
GCACGGGAGCAGCGGGCTTGGAATAAAGGGTTGATGGTAGTGGAAAAGAA
GGCGCGTGAGTTGCTAAAAAGCCCCATAGGTGTGACAAAGCTGAAGGAAA
GGAAGGTGAGGGCGTGGGGGAAGCGGGAGGAAGTCCGGGGCCGTGTTGAG
ACGATTCACCGGGAGTTGGAGGAGGTGAACCGAGCCTGGGAAGCAGAGCA
GGAAACAAAGCGGCAGGAGCAGCAGCAGGAGCAGCAACAGTGGCGGCTGG
AGGGAGAGGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCGC
ACGGGTGTTGGAGGGGGAGGGAAGGAGAGGCAGCATTGGCGAGAACTGGG
TCGTTTGCAGGAGCTCCAGCGGGTGCTGAGGGAAGAAGGAGCGGTGTTAG
ATCGTAAAATTACCGTGGCATGA

Coding sequence (CDS) from alignment at scaffold_1:24559..26781-

>mRNA_1229 ID=mRNA_1229|Name=jgi.p|Nanoce1779_2|667216|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_1:24559..26781- (Nannochloropsis oceanica)
GCTTAGAACATGACAAATCTCGTGTCTCAGACCTCTACGAGCAAGCTGCC
CGTTACAAAGCCCGCAGCACCGTGCTGGACCGGGATCTCGTGCTTTTACG
TGCCCAGGTTGAAGAGCTGTCGGTAGAGGTTTCGACGTTGTCGGGTCGCA
TCGCCCAAGAATACGAAACCCTTGCGCAGCTACACAAGATGGAAGTCGAG
CTAGAAAAAGAACATAAGCAAAACACGGCGAAGCTGCAGGAGTTTGAGGC
GGCCTGTCAAGAGAGGAATTCGGAGAAAGAGAGGATGATGGCGAGGGTGG
CACGGGAGCAGCGGGCTTGGAATAAAGGGTTGATGGTAGTGGAAAAGAAG
GCGCGTGAGTTGCTAAAAAGCCCCATAGGTGTGACAAAGCTGAAGGAAAG
GAAGGTGAGGGCGTGGGGGAAGCGGGAGGAAGTCCGGGGCCGTGTTGAGA
CGATTCACCGGGAGTTGGAGGAGGTGAACCGAGCCTGGGAAGCAGAGCAG
GAAACAAAGCGGCAGGAGCAGCAGCAGGAGCAGCAACAGTGGCGGCTGGA
GGGAGAGGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCGCA
CGGGTGTTGGAGGGGGAGGGAAGGAGAGGCAGCATTGGCGAGAACTGGGT
CGTTTGCAGGAGCTCCAGCGGGTGCTGAGGGAAGAAGGAGCGGTGTTAGA
TCGTAAAATTACCGTGGCATGACAAAACACTGCCTCTACCAGAGAAAACA
TGCCATCCCATGACAACTACCACGGTTCATTCTCAATTGAGAATAATGCC
ATCCAGCACGCTGAGAACATCAAGCTCCAGCACGTGGCTGAAAATGGCTT
AGAACATGACAAATCTCGTGTCTCAGACCTCTACGAGCAAGCTGCCCGTT
ACAAAGCCCGCAGCACCGTGCTGGACCGGGATCTCGTGCTTTTACGTGCC
CAGGTTGAAGAGCTGTCGGTAGAGGTTTCGACGTTGTCGGGTCGCATCGC
CCAAGAATACGAAACCCTTGCGCAGCTACACAAGATGGAAGTCGAGCTAG
AAAAAGAACATAAGCAAAACACGGCGAAGCTGCAGGAGTTTGAGGCGGCC
TGTCAAGAGAGGAATTCGGAGAAAGAGAGGATGATGGCGAGGGTGGCACG
GGAGCAGCGGGCTTGGAATAAAGGGTTGATGGTAGTGGAAAAGAAGGCGC
GTGAGTTGCTAAAAAGCCCCATAGGTGTGACAAAGCTGAAGGAAAGGAAG
GTGAGGGCGTGGGGGAAGCGGGAGGAAGTCCGGGGCCGTGTTGAGACGAT
TCACCGGGAGTTGGAGGAGGTGAACCGAGCCTGGGAAGCAGAGCAGGAAA
CAAAGCGGCAGGAGCAGCAGCAGGAGCAGCAACAGTGGCGGCTGGAGGGA
GAGGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCGCACGGG
TGTTGGAGGGGGAGGGAAGGAGAGGCAGCATTGGCGAGAACTGGGTCGTT
TGCAGGAGCTCCAGCGGGTGCTGAGGGAAGAAGGAGCGGTGTTAGATCGT
AAAATTACCGTGGCATGACAAAACACTGCCTCTACCAGAGAAAACATGCC
ATCCCATGACAACTACCACGGTTCATTCTCAATTGAGAATAATGCCATCC
AGCACGCTGAGAACATCAAGCTCCAGCACGTGGCTGAAAATGGCTTAGAA
CATGACAAATCTCGTGTCTCAGACCTCTACGAGCAAGCTGCCCGTTACAA
AGCCCGCAGCACCGTGCTGGACCGGGATCTCGTGCTTTTACGTGCCCAGG
TTGAAGAGCTGTCGGTAGAGGTTTCGACGTTGTCGGGTCGCATCGCCCAA
GAATACGAAACCCTTGCGCAGCTACACAAGATGGAAGTCGAGCTAGAAAA
AGAACATAAGCAAAACACGGCGAAGCTGCAGGAGTTTGAGGCGGCCTGTC
AAGAGAGGAATTCGGAGAAAGAGAGGATGATGGCGAGGGTGGCACGGGAG
CAGCGGGCTTGGAATAAAGGGTTGATGGTAGTGGAAAAGAAGGCGCGTGA
GTTGCTAAAAAGCCCCATAGGTGTGACAAAGCTGAAGGAAAGGAAGGTGA
GGGCGTGGGGGAAGCGGGAGGAAGTCCGGGGCCGTGTTGAGACGATTCAC
CGGGAGTTGGAGGAGGTGAACCGAGCCTGGGAAGCAGAGCAGGAAACAAA
GCGGCAGGAGCAGCAGCAGGAGCAGCAACAGTGGCGGCTGGAGGGAGAGG
AGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCGCACGGGTGTT
GGAGGGGGAGGGAAGGAGAGGCAGCATTGGCGAGAACTGGGTCGTTTGCA
GGAGCTCCAGCGGGTGCTGAGGGAAGAAGGAGCGGTGTTAGATCGTAAAA
TTACCGTGGCATGACAAAACACTGCCTCTACCAGAGAAAACATGCCATCC
CATGACAACTACCACGGTTCATTCTCAATTGAGAATAATGCCATCCAGCA
CGCTGAGAACATCAAGCTCCAGCACGTGGCTGAAAATG

Synonyms

Publications