jgi.p|Nanoce1779_2|166, mRNA_1227 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|166
Unique NamemRNA_1227
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length732
Alignment locationscaffold_1:21752..22483 -

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Properties
Property NameValue
TranscriptId252
TrackFilteredModels2
ProteinId166
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:21752..22483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166gene_1227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166mRNA_1227-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1227CDS_1227Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1227 ID=mRNA_1227|Name=jgi.p|Nanoce1779_2|166|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
ACTGGACTTCAAAATGCTTTGTCACCACTGAGGTGTCGATCCAATTCGTC
TTGCCACTTAATGGGTCATAGAGTTTGGTCGCACTTGATATCCAATTTGG
GGGAGCCGCCATAGAACCGTCCTCCGAAGCTGTGCGGGCGTCATTCAAGT
TGCGCGCCGCTGGATGTTCGTTCTGGGTGTCGGAGCAGGCCCCCGCGGCA
TCCCCAATAAATTCCGTAGTAATGTCGCCCTTAAAGCCGCGGGCGTTGCA
CGTCGTCGCGTTGCCACTTAGTGTGGCGAAGATACCATCCAAAGTTTGTG
ACTCAGTGCCCGGCAAAGATTTAATCGTTCGGCGTCCCTTCGCTAATGGT
ATTGCTGCCTTAAAGGACGTGCGAGTCAGCTATTGCCTCGTCCACCCTTG
TCGTTATTTCCGTCAAAAAGCGCGTCGTAGGTGTCTTGGACGTGGCTGTC
AAGAGTTTGTACCCGGAATGCTTCCACGGCTTAGCCACACCATTCCTCTC
GACCAAAATAAAATTCAATGCAGGGGATGCGCCAGTATTGATCCAAGCAG
CCTTTCCAACATAGATGCTTTATGGGCTACAGCCTACCACAGCCGTTCCC
GGGCCTATAAAGGCGTCGATACCAAAGAGGACAGCGAGGAGCACACCCAC
ATTCTTGGTGAGGGGTGCTCCTAAATCCACCTGAATCCCCGATCCTAAAA
ACAAGTCTGCCCCCACCAGCACCGGGGATGCC
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protein sequence of jgi.p|Nanoce1779_2|166

>mRNA_1227-protein ID=mRNA_1227-protein|Name=jgi.p|Nanoce1779_2|166|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSPLKPRALHVVALPLSVAKIPSKVCDSVPGKDLIVRRPFANGIAALKDV
RVSYCLVHPCRYFRQKARRRCLGRGCQEFVPGMLPRLSHTIPLDQNKIQC
RGCASIDPSSLSNIDALWATAYHSRSRAYKGVDTKEDSEEHTHILGEGCS
*
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mRNA from alignment at scaffold_1:21752..22483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1227 ID=mRNA_1227|Name=jgi.p|Nanoce1779_2|166|organism=Nannochloropsis oceanica|type=mRNA|length=732bp|location=Sequence derived from alignment at scaffold_1:21752..22483- (Nannochloropsis oceanica)
ACTGGACTTCAAAATGCTTTGTCACCACTGAGGTGTCGATCCAATTCGTC
TTGCCACTTAATGGGTCATAGAGTTTGGTCGCACTTGATATCCAATTTGG
GGGAGCCGCCATAGAACCGTCCTCCGAAGCTGTGCGGGCGTCATTCAAGT
TGCGCGCCGCTGGATGTTCGTTCTGGGTGTCGGAGCAGGCCCCCGCGGCA
TCCCCAATAAATTCCGTAGTAATGTCGCCCTTAAAGCCGCGGGCGTTGCA
CGTCGTCGCGTTGCCACTTAGTGTGGCGAAGATACCATCCAAAGTTTGTG
ACTCAGTGCCCGGCAAAGATTTAATCGTTCGGCGTCCCTTCGCTAATGGT
ATTGCTGCCTTAAAGGACGTGCGAGTCAGCTATTGCCTCGTCCACCCTTG
TCGTTATTTCCGTCAAAAAGCGCGTCGTAGGTGTCTTGGACGTGGCTGTC
AAGAGTTTGTACCCGGAATGCTTCCACGGCTTAGCCACACCATTCCTCTC
GACCAAAATAAAATTCAATGCAGGGGATGCGCCAGTATTGATCCAAGCAG
CCTTTCCAACATAGATGCTTTATGGGCTACAGCCTACCACAGCCGTTCCC
GGGCCTATAAAGGCGTCGATACCAAAGAGGACAGCGAGGAGCACACCCAC
ATTCTTGGTGAGGGGTGCTCCTAAATCCACCTGAATCCCCGATCCTAAAA
ACAAGTCTGCCCCCACCAGCACCGGGGATGCC
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Coding sequence (CDS) from alignment at scaffold_1:21752..22483-

>mRNA_1227 ID=mRNA_1227|Name=jgi.p|Nanoce1779_2|166|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_1:21752..22483- (Nannochloropsis oceanica)
ATGTCGCCCTTAAAGCCGCGGGCGTTGCACGTCGTCGCGTTGCCACTTAG
TGTGGCGAAGATACCATCCAAAGTTTGTGACTCAGTGCCCGGCAAAGATT
TAATCGTTCGGCGTCCCTTCGCTAATGGTATTGCTGCCTTAAAGGACGTG
CGAGTCAGCTATTGCCTCGTCCACCCTTGTCGTTATTTCCGTCAAAAAGC
GCGTCGTAGGTGTCTTGGACGTGGCTGTCAAGAGTTTGTACCCGGAATGC
TTCCACGGCTTAGCCACACCATTCCTCTCGACCAAAATAAAATTCAATGC
AGGGGATGCGCCAGTATTGATCCAAGCAGCCTTTCCAACATAGATGCTTT
ATGGGCTACAGCCTACCACAGCCGTTCCCGGGCCTATAAAGGCGTCGATA
CCAAAGAGGACAGCGAGGAGCACACCCACATTCTTGGTGAGGGGTGCTCC
TAA
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Synonyms
Publications