jgi.p|Nanoce1779_2|667214, mRNA_1226 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667214
Unique NamemRNA_1226
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1032
Alignment locationscaffold_1:18636..20406 +

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Properties
Property NameValue
TranscriptId667300
TrackFilteredModels2
ProteinId667214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:18636..20406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667214gene_1226Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667214mRNA_1226-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1226CDS_1226Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1226 ID=mRNA_1226|Name=jgi.p|Nanoce1779_2|667214|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp
ATGAAAGTTCCTGTGGTGAATGAGGCAGCGGGAAGTAGTGCTGCGGCCAC
GGGCTGGCAGAAGCGACTTCCTGTCCTATTTGCCTCGATGGTGGTGGCAG
GGTTGATCGTGGTTCTTCGCGTTCACCCTAACATGAAGCATGGTACAGTG
TTGTTGCCAGGCACGGATGTGACGATCTTGGAGGAGTTATGTTTGAGGGA
AATAGTCACAAGGATTCGCTGGCTACAATCGCGCGAGTCACTGAAATCCA
CGGAAAGATTTTCTGCAGTCGATAGTGCCGGAGACTATACCCCTCTGGAT
GGCCTTGATCTCCTGCGCATGGTCGAGAATACCACGATTTCTGCCGAAAT
TATCCTCCGCGCTGGCGTGATGCACAATATTCAGCAGCCCGATTCCACCG
ATGAAGTCAGAGTGCGCTCTCGCAAAGTCCTTGTTGGGAACCTCATGCTT
ATGCGGACCCTCGATGGAGGCGACTGCACACATCTCTTCCGCGTGGGGGC
AGGCGGGTTGCTTTACCTCCAATTTGTTCGTACTTTCCGCGGCAGAGGCG
AGCTGATTGCGACAATCCTAGTTCTGAAGGATTGGACTACCTTGATTGAG
TTAAGAGGGTGCTTCTCTGCGTTTGATATCATTTTCACAAATGTCCCACC
GTTGAGGATTGCCGCTGTTCAAAATTCTCCCGACCTGTCAAGTGCAGTCC
GGATCTTCGGAGGCCAGATATTCAACGTGGGCAAGACCGTCACCATCACC
CTGTCGTAATTCTGGGTTCTCCAGCCGGCGGTATTATTCCGTTAGATATA
TGCGATCAGGGCGAAAAGTGTCGGGGATGGCTGTCCTCTCGGGTGTAACA
TAGACGAATTCTCAGTTGTTAATCAATCGGGACGATGTGCCCCGGGATGC
TTCGTGGAGAAAGGAGTACTGTACTCTGCCGTGCACTGGAACATTCAATA
AAAGGCCCTTGTGTTGTGAGACACTTGGCTGTCGATGTGGGAGCTCGTTC
AGAGATGGTTATTTGTGCCATCCATCACTGGC
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protein sequence of jgi.p|Nanoce1779_2|667214

>mRNA_1226-protein ID=mRNA_1226-protein|Name=jgi.p|Nanoce1779_2|667214|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MKVPVVNEAAGSSAAATGWQKRLPVLFASMVVAGLIVVLRVHPNMKHGTV
LLPGTDVTILEELCLREIVTRIRWLQSRESLKSTERFSAVDSAGDYTPLD
GLDLLRMVENTTISAEIILRAGVMHNIQQPDSTDEVRVRSRKVLVGNLML
MRTLDGGDCTHLFRVGAGGLLYLQFVRTFRGRGELIATILVLKDWTTLIE
LRGCFSAFDIIFTNVPPLRIAAVQNSPDLSSAVRIFGGQIFNVGKTVTIT
LS*
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mRNA from alignment at scaffold_1:18636..20406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1226 ID=mRNA_1226|Name=jgi.p|Nanoce1779_2|667214|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at scaffold_1:18636..20406+ (Nannochloropsis oceanica)
ATGAAAGTTCCTGTGGTGAATGAGGCAGCGGGAAGTAGTGCTGCGGCCAC
GGGCTGGCAGAAGCGACTTCCTGTCCTATTTGCCTCGATGGTGGTGGCAG
GGTTGATCGTGGTTCTTCGCGTTCACCCTAACATGAAGCATGGTACAGTG
TTGTTGCCAGGCACGGATGTGACGATCTTGGAGGAGTTATGTTTGAGGGA
AATAGTCACAGTTAAGCAGAGAAAAGGACGTGATGAAGGACAAGGTCATC
GAGAAAGAGGAGGAAAGAGATCTGAAATAATGGGTACTACGGTATGTTTT
TCATCCCTTTGGAAGTAGATTTACAGTCAAATGAGGTATATGATGTCATT
ATTAAGAGGAATCGGGGAATAAGAATGGGGGAGCCGGGAGAGCTGAGAAA
ACGAGGGAAAGGGTGCTGTTTTTATTATGGGTACGTGATGTTTTCATTTT
CTCGTTAAATGATTTTACTTTTCTCGATACCGTTATGATTCTTCTGATTG
CCACAGGCGGGAGTGACGACGAGCGGTAACCCCAGTGACACGACTGGTAA
GTGCATCCCCTCATATCTACGCCCTCACCTTCCTTCACTTCAGATTTTAC
TGTCTCTCTTCCTTTTTGTCCCCCTCCCTTTCATCCCTCCGTGCTTTTTT
CACTCAGGTAATCATTTTTCTGCTTCCGCAGGCTTCAGTTTGCTATCTTT
TTCAACTGACTTTTCCACTCATATACAATCGTTTTGCATTCCACCCTTCC
CACCCAACCTCTGGCTCCCGCGTTCAGCCTCCACACATGCCAATCATGAC
TCCCGTAAAGGAAGTAATGGATTGCGAAATTCTTAAAACTGGCCGAAAGC
AGCAACGACCGCAGGACAGATATCCATATATGATCAAATATACCGACAGC
AAACAGCCGACTTCAACCCAGACCAAGAATGTTTTCCTCGAACAAATAGA
GGATTCGCTGGCTACAATCGCGCGAGTCACTGAAATCCACGGAAAGATTT
TCTGCAGTCGATAGTGCCGGAGACTATACCCCTCTGGATGGCCTTGATCT
CCTGCGCATGGTCGAGAATACCACGATTTCTGCCGAAATTATCCTCCGCG
CTGGCGTGATGCACAATATTCAGCAGCCCGATTCCACCGATGAAGTCAGA
GTGCGCTCTCGCAAAGTCCTTGTTGGGAACCTCATGCTTATGCGGACCCT
CGATGGAGGCGACTGCACACATCTCTTCCGCGTGGGGGCAGGCGGGTTGC
TTTACCTCCAATTTGTTCGTACTTTCCGCGGCAGAGGCGAGCTGATTGCG
ACAATCCTAGTTCTGAAGGATTGGACTACCTTGATTGAGTTAAGAGGGTG
CTTCTCTGCGTTTGATATCATTTTCACAAATGTCCCACCGTTGAGGATTG
CCGCTGTTCAAAATTCTCCCGACCTGTCAAGTGCAGTCCGGATCTTCGGA
GGCCAGATATTCAACGTGGGCAAGACCGTCACCATCACCCTGTCGTAATT
CTGGGTTCTCCAGCCGGCGGTATTATTCCGTTAGATATATGCGATCAGGG
CGAAAAGTGTCGGGGATGGCTGTCCTCTCGGGTGTAACATAGACGAATTC
TCAGTTGTTAATCAATCGGGACGATGTGCCCCGGGATGCTTCGTGGAGAA
AGGAGTACTGTACTCTGCCGTGCACTGGAACATTCAATAAAAGGCCCTTG
TGTTGTGAGACACTTGGCTGTCGATGTGGGAGCTCGTTCAGAGATGGTTA
TTTGTGCCATCCATCACTGGC
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Coding sequence (CDS) from alignment at scaffold_1:18636..20406+

>mRNA_1226 ID=mRNA_1226|Name=jgi.p|Nanoce1779_2|667214|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_1:18636..20406+ (Nannochloropsis oceanica)
ATGAAAGTTCCTGTGGTGAATGAGGCAGCGGGAAGTAGTGCTGCGGCCAC
GGGCTGGCAGAAGCGACTTCCTGTCCTATTTGCCTCGATGGTGGTGGCAG
GGTTGATCGTGGTTCTTCGCGTTCACCCTAACATGAAGCATGGTACAGTG
TTGTTGCCAGGCACGGATGTGACGATCTTGGAGGAGTTATGTTTGAGGGA
AATAGTCACAAGGATTCGCTGGCTACAATCGCGCGAGTCACTGAAATCCA
CGGAAAGATTTTCTGCAGTCGATAGTGCCGGAGACTATACCCCTCTGGAT
GGCCTTGATCTCCTGCGCATGGTCGAGAATACCACGATTTCTGCCGAAAT
TATCCTCCGCGCTGGCGTGATGCACAATATTCAGCAGCCCGATTCCACCG
ATGAAGTCAGAGTGCGCTCTCGCAAAGTCCTTGTTGGGAACCTCATGCTT
ATGCGGACCCTCGATGGAGGCGACTGCACACATCTCTTCCGCGTGGGGGC
AGGCGGGTTGCTTTACCTCCAATTTGTTCGTACTTTCCGCGGCAGAGGCG
AGCTGATTGCGACAATCCTAGTTCTGAAGGATTGGACTACCTTGATTGAG
TTAAGAGGGTGCTTCTCTGCGTTTGATATCATTTTCACAAATGTCCCACC
GTTGAGGATTGCCGCTGTTCAAAATTCTCCCGACCTGTCAAGTGCAGTCC
GGATCTTCGGAGGCCAGATATTCAACGTGGGCAAGACCGTCACCATCACC
CTGTCGTAAATGAAAGTTCCTGTGGTGAATGAGGCAGCGGGAAGTAGTGC
TGCGGCCACGGGCTGGCAGAAGCGACTTCCTGTCCTATTTGCCTCGATGG
TGGTGGCAGGGTTGATCGTGGTTCTTCGCGTTCACCCTAACATGAAGCAT
GGTACAGTGTTGTTGCCAGGCACGGATGTGACGATCTTGGAGGAGTTATG
TTTGAGGGAAATAGTCACAAGGATTCGCTGGCTACAATCGCGCGAGTCAC
TGAAATCCACGGAAAGATTTTCTGCAGTCGATAGTGCCGGAGACTATACC
CCTCTGGATGGCCTTGATCTCCTGCGCATGGTCGAGAATACCACGATTTC
TGCCGAAATTATCCTCCGCGCTGGCGTGATGCACAATATTCAGCAGCCCG
ATTCCACCGATGAAGTCAGAGTGCGCTCTCGCAAAGTCCTTGTTGGGAAC
CTCATGCTTATGCGGACCCTCGATGGAGGCGACTGCACACATCTCTTCCG
CGTGGGGGCAGGCGGGTTGCTTTACCTCCAATTTGTTCGTACTTTCCGCG
GCAGAGGCGAGCTGATTGCGACAATCCTAGTTCTGAAGGATTGGACTACC
TTGATTGAGTTAAGAGGGTGCTTCTCTGCGTTTGATATCATTTTCACAAA
TGTCCCACCGTTGAGGATTGCCGCTGTTCAAAATTCTCCCGACCTGTCAA
GTGCAGTCCGGATCTTCGGAGGCCAGATATTCAACGTGGGCAAGACCGTC
ACCATCACCCTGTCGTAA
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Synonyms
Publications