jgi.p|Nanoce1779_2|571398, mRNA_1225 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571398
Unique NamemRNA_1225
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length601
Alignment locationscaffold_1:17318..17918 -

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Properties
Property NameValue
TranscriptId571484
TrackFilteredModels2
ProteinId571398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:17318..17918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571398gene_1225Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571398mRNA_1225-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1225CDS_1225Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1225 ID=mRNA_1225|Name=jgi.p|Nanoce1779_2|571398|organism=Nannochloropsis oceanica|type=mRNA|length=601bp
CCCCGCTGCTCTTGTTGCTGCTGCGGCATCGGTACCATCTGCTGCTGCTG
GTGTTGCTGCTGGTGCTGTTGGTGCTGATGCTGGTGCTGGTGCTGCTGCT
GGTGTTGTTGCTGGTGTTGCCAAACGCTCACAGGATTGACCATACCAGAG
CCTCCTTCGATAAGGTTGGAGTGAAAGCCGAGACCGCCGCCAACAACCCC
CCGGGGACCTCCAATCCCTGCCGTCGCCCCAGGATTGACACCTCCTACTC
CTGCTGCTCCTGCTACTCCCGCTTCCCATGGGTTAAACAAGGACGAGTTC
GAACTGTGAGGGGGGACTCCTGGAAGGGAAGCCCAGTTGGTGTTCATATT
GGTAACACTAGTATTGGAGTTCCCAGCACCGACATGGGGAAGGGGGTAGC
TGGGGTTCTGAAGGGGCCTGGGAGGGAGGGAGGGTTGGCTCCCACTAGAA
CCAGCGCCCGGGCTGGCATCATCGATAGCGTTAGCGTTTGGGGCCTTGAA
CATGTTCGGATTCGCATGGAGCCAGTAGGCCCGTTCGGCGTCGGGCATCG
ACAATAAGTACTGCTGTTGCTGCTGCTGGTGCTGGTGCTGGTGCTGGTGC
T
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protein sequence of jgi.p|Nanoce1779_2|571398

>mRNA_1225-protein ID=mRNA_1225-protein|Name=jgi.p|Nanoce1779_2|571398|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MLVLVLLLVLLLVLPNAHRIDHTRASFDKVGVKAETAANNPPGTSNPCRR
PRIDTSYSCCSCYSRFPWVKQGRVRTVRGDSWKGSPVGVHIGNTSIGVPS
TDMGKGVAGVLKGPGREGGLAPTRTSARAGIIDSVSVWGLEHVRIRMEPV
GPFGVGHRQ*
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mRNA from alignment at scaffold_1:17318..17918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1225 ID=mRNA_1225|Name=jgi.p|Nanoce1779_2|571398|organism=Nannochloropsis oceanica|type=mRNA|length=601bp|location=Sequence derived from alignment at scaffold_1:17318..17918- (Nannochloropsis oceanica)
CCCCGCTGCTCTTGTTGCTGCTGCGGCATCGGTACCATCTGCTGCTGCTG
GTGTTGCTGCTGGTGCTGTTGGTGCTGATGCTGGTGCTGGTGCTGCTGCT
GGTGTTGTTGCTGGTGTTGCCAAACGCTCACAGGATTGACCATACCAGAG
CCTCCTTCGATAAGGTTGGAGTGAAAGCCGAGACCGCCGCCAACAACCCC
CCGGGGACCTCCAATCCCTGCCGTCGCCCCAGGATTGACACCTCCTACTC
CTGCTGCTCCTGCTACTCCCGCTTCCCATGGGTTAAACAAGGACGAGTTC
GAACTGTGAGGGGGGACTCCTGGAAGGGAAGCCCAGTTGGTGTTCATATT
GGTAACACTAGTATTGGAGTTCCCAGCACCGACATGGGGAAGGGGGTAGC
TGGGGTTCTGAAGGGGCCTGGGAGGGAGGGAGGGTTGGCTCCCACTAGAA
CCAGCGCCCGGGCTGGCATCATCGATAGCGTTAGCGTTTGGGGCCTTGAA
CATGTTCGGATTCGCATGGAGCCAGTAGGCCCGTTCGGCGTCGGGCATCG
ACAATAAGTACTGCTGTTGCTGCTGCTGGTGCTGGTGCTGGTGCTGGTGC
T
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Coding sequence (CDS) from alignment at scaffold_1:17318..17918-

>mRNA_1225 ID=mRNA_1225|Name=jgi.p|Nanoce1779_2|571398|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_1:17318..17918- (Nannochloropsis oceanica)
ATGCTGGTGCTGGTGCTGCTGCTGGTGTTGTTGCTGGTGTTGCCAAACGC
TCACAGGATTGACCATACCAGAGCCTCCTTCGATAAGGTTGGAGTGAAAG
CCGAGACCGCCGCCAACAACCCCCCGGGGACCTCCAATCCCTGCCGTCGC
CCCAGGATTGACACCTCCTACTCCTGCTGCTCCTGCTACTCCCGCTTCCC
ATGGGTTAAACAAGGACGAGTTCGAACTGTGAGGGGGGACTCCTGGAAGG
GAAGCCCAGTTGGTGTTCATATTGGTAACACTAGTATTGGAGTTCCCAGC
ACCGACATGGGGAAGGGGGTAGCTGGGGTTCTGAAGGGGCCTGGGAGGGA
GGGAGGGTTGGCTCCCACTAGAACCAGCGCCCGGGCTGGCATCATCGATA
GCGTTAGCGTTTGGGGCCTTGAACATGTTCGGATTCGCATGGAGCCAGTA
GGCCCGTTCGGCGTCGGGCATCGACAATAA
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Synonyms
Publications