jgi.p|Nanoce1779_2|571391, mRNA_1223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571391
Unique NamemRNA_1223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length456
Alignment locationscaffold_1:12574..13166 +

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Properties
Property NameValue
TranscriptId571477
TrackFilteredModels2
ProteinId571391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:12574..13166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571391gene_1223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571391mRNA_1223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1223CDS_1223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1223 ID=mRNA_1223|Name=jgi.p|Nanoce1779_2|571391|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
CAGCCACCCGCCATGCCCACCTGTTCTACTGCCGCCACTGCCACCACAAA
GCGTCGCTGTTTACGCATGTGGTTGAAATATGTCTGCATGTCGCAGATCC
TGTAATAGAAGTAGCAGCAGCAGCTGTTGCAACAACAGCAGCAGGGAGAT
GGCAACGCGGGAGTTGTTGGTAGTGGTGATGATTGTGATAGTGGCGGTGG
TGGTGCTGTTGTGTGAGCGGGGTTTGGCAATGATGCACCCGATCACGCGT
GGCATGGAGAAAGGGATGGATGGATGCCCGACTGGTGGAGTGGAAGGGGT
AGGGGTGCTTCTCCTGCTGCTGCTGTTGCTGCTGCCGCTGCTGCAACGGC
AAATGGTGGTGGGAAAGATTCTTCTGTTGGAGTTGCGATGAATGCTGAGG
GTTCGACACTGGTCCGTCTGCCGTTGCTGCTACAGCTGCTGCTGCTGTGG
CTGCTG
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protein sequence of jgi.p|Nanoce1779_2|571391

>mRNA_1223-protein ID=mRNA_1223-protein|Name=jgi.p|Nanoce1779_2|571391|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSACRRSCNRSSSSSCCNNSSREMATRELLVVVMIVIVAVVVLLCERGLA
MMHPITRGMEKGMDGCPTGGVEGVGVLLLLLLLLLPLLQRQMVVGKILLL
ELR*
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mRNA from alignment at scaffold_1:12574..13166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1223 ID=mRNA_1223|Name=jgi.p|Nanoce1779_2|571391|organism=Nannochloropsis oceanica|type=mRNA|length=593bp|location=Sequence derived from alignment at scaffold_1:12574..13166+ (Nannochloropsis oceanica)
CAGCCACCCGCCATGCCCACCTGTTCTACTGCCGCCACTGCCACCACAAA
GCGTCGCTGTTTACGCATGTGGTTGAAATATGTCTGCATGTCGCAGATCC
TGCAGGTGAAATCGGGTGGGAGGAAGAGGAGCAACAGAAGAAGCGTTAGG
CTGCCATAGGAGGCGGTGGTGCTGCAGTTGTTGTTGTGGATGCTGCTGCT
GCTGCTGCGGCTGCTGCTGACGATGGTAGGACGGACCTGTAATAGAAGTA
GCAGCAGCAGCTGTTGCAACAACAGCAGCAGGGAGATGGCAACGCGGGAG
TTGTTGGTAGTGGTGATGATTGTGATAGTGGCGGTGGTGGTGCTGTTGTG
TGAGCGGGGTTTGGCAATGATGCACCCGATCACGCGTGGCATGGAGAAAG
GGATGGATGGATGCCCGACTGGTGGAGTGGAAGGGGTAGGGGTGCTTCTC
CTGCTGCTGCTGTTGCTGCTGCCGCTGCTGCAACGGCAAATGGTGGTGGG
AAAGATTCTTCTGTTGGAGTTGCGATGAATGCTGAGGGTTCGACACTGGT
CCGTCTGCCGTTGCTGCTACAGCTGCTGCTGCTGTGGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_1:12574..13166+

>mRNA_1223 ID=mRNA_1223|Name=jgi.p|Nanoce1779_2|571391|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_1:12574..13166+ (Nannochloropsis oceanica)
ATGTCTGCATGTCGCAGATCCTGTAATAGAAGTAGCAGCAGCAGCTGTTG
CAACAACAGCAGCAGGGAGATGGCAACGCGGGAGTTGTTGGTAGTGGTGA
TGATTGTGATAGTGGCGGTGGTGGTGCTGTTGTGTGAGCGGGGTTTGGCA
ATGATGCACCCGATCACGCGTGGCATGGAGAAAGGGATGGATGGATGCCC
GACTGGTGGAGTGGAAGGGGTAGGGGTGCTTCTCCTGCTGCTGCTGTTGC
TGCTGCCGCTGCTGCAACGGCAAATGGTGGTGGGAAAGATTCTTCTGTTG
GAGTTGCGATGAATGTCTGCATGTCGCAGATCCTGTAATAGAAGTAGCAG
CAGCAGCTGTTGCAACAACAGCAGCAGGGAGATGGCAACGCGGGAGTTGT
TGGTAGTGGTGATGATTGTGATAGTGGCGGTGGTGGTGCTGTTGTGTGAG
CGGGGTTTGGCAATGATGCACCCGATCACGCGTGGCATGGAGAAAGGGAT
GGATGGATGCCCGACTGGTGGAGTGGAAGGGGTAGGGGTGCTTCTCCTGC
TGCTGCTGTTGCTGCTGCCGCTGCTGCAACGGCAAATGGTGGTGGGAAAG
ATTCTTCTGTTGGAGTTGCGATGA
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Synonyms
Publications