jgi.p|Nanoce1779_2|571385, mRNA_1222 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571385
Unique NamemRNA_1222
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length612
Alignment locationscaffold_1:10394..11005 +

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Properties
Property NameValue
TranscriptId571471
TrackFilteredModels2
ProteinId571385
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:10394..11005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571385gene_1222Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571385mRNA_1222-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1222CDS_1222Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1222 ID=mRNA_1222|Name=jgi.p|Nanoce1779_2|571385|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATCCATCTGTATTTTTCTTTTTTCAGTTTTCTTCACCACAATGGATCTCT
CTCACTTATGCCGAGCCTGCTGCTACTACTGCTGCTACTACTGCTGTGGC
TGCTGCTGTTGCTGCTGTTTTCTTTTTTCTCTTCCTTATCTTTCATGCCT
CTTCCTCCTCCTCCTCAACGTATTACATGCTTCATTTTTAAATTTTTCGT
GTACATGTAAGTGTGCATCTTTCTCTCTTCCTCCTTCTTTCCTCCTTTCA
CTCGCTCATGCACATACATACGGACGGACGCGCAAACACAAACCCTCCCT
CTCTTTCCATTTTGTCCTACTTGCCTTCTTCCTGCTCCCTCACTCGCGAT
GTGCGGATAAATCCCCCGCCATGCTGCTCATCCTCCTCCTCTTCCTTCTC
CTCCTCCTTCTTTTCCTCACCTCCCCCGACGTCCTTCCCTGGGACTCTCC
GCTATACACTCGCACCTAATTACGACGCTCAAAATACGTCCCTATCCGTC
CAAAGCCCACCTGCACCTCGTCCGCTATACACACAAGAGGAGAGACGGGA
GGGGCAGGGGTACTCCTATCTCCCTTCCTTCTCCCATTGCTTCTCTTCTC
GTTCCTTGCCCG
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protein sequence of jgi.p|Nanoce1779_2|571385

>mRNA_1222-protein ID=mRNA_1222-protein|Name=jgi.p|Nanoce1779_2|571385|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MDLSHLCRACCYYCCYYCCGCCCCCCFLFSLPYLSCLFLLLLNVLHASFL
NFSCTCKCASFSLPPSFLLSLAHAHTYGRTRKHKPSLSFHFVLLAFFLLP
HSRCADKSPAMLLILLLFLLLLLLFLTSPDVLPWDSPLYTRT*
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mRNA from alignment at scaffold_1:10394..11005+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1222 ID=mRNA_1222|Name=jgi.p|Nanoce1779_2|571385|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at scaffold_1:10394..11005+ (Nannochloropsis oceanica)
ATCCATCTGTATTTTTCTTTTTTCAGTTTTCTTCACCACAATGGATCTCT
CTCACTTATGCCGAGCCTGCTGCTACTACTGCTGCTACTACTGCTGTGGC
TGCTGCTGTTGCTGCTGTTTTCTTTTTTCTCTTCCTTATCTTTCATGCCT
CTTCCTCCTCCTCCTCAACGTATTACATGCTTCATTTTTAAATTTTTCGT
GTACATGTAAGTGTGCATCTTTCTCTCTTCCTCCTTCTTTCCTCCTTTCA
CTCGCTCATGCACATACATACGGACGGACGCGCAAACACAAACCCTCCCT
CTCTTTCCATTTTGTCCTACTTGCCTTCTTCCTGCTCCCTCACTCGCGAT
GTGCGGATAAATCCCCCGCCATGCTGCTCATCCTCCTCCTCTTCCTTCTC
CTCCTCCTTCTTTTCCTCACCTCCCCCGACGTCCTTCCCTGGGACTCTCC
GCTATACACTCGCACCTAATTACGACGCTCAAAATACGTCCCTATCCGTC
CAAAGCCCACCTGCACCTCGTCCGCTATACACACAAGAGGAGAGACGGGA
GGGGCAGGGGTACTCCTATCTCCCTTCCTTCTCCCATTGCTTCTCTTCTC
GTTCCTTGCCCG
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Coding sequence (CDS) from alignment at scaffold_1:10394..11005+

>mRNA_1222 ID=mRNA_1222|Name=jgi.p|Nanoce1779_2|571385|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_1:10394..11005+ (Nannochloropsis oceanica)
ATGGATCTCTCTCACTTATGCCGAGCCTGCTGCTACTACTGCTGCTACTA
CTGCTGTGGCTGCTGCTGTTGCTGCTGTTTTCTTTTTTCTCTTCCTTATC
TTTCATGCCTCTTCCTCCTCCTCCTCAACGTATTACATGCTTCATTTTTA
AATTTTTCGTGTACATGTAAGTGTGCATCTTTCTCTCTTCCTCCTTCTTT
CCTCCTTTCACTCGCTCATGCACATACATACGGACGGACGCGCAAACACA
AACCCTCCCTCTCTTTCCATTTTGTCCTACTTGCCTTCTTCCTGCTCCCT
CACTCGCGATGTGCGGATAAATCCCCCGCCATGCTGCTCATCCTCCTCCT
CTTCCTTCTCCTCCTCCTTCTTTTCCTCACCTCCCCCGACGTCCTTCCCT
GGGACTCTCCGCTATACACTCGCACCTAA
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Synonyms
Publications