jgi.p|Nanoce1779_2|571378, mRNA_1221 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571378
Unique NamemRNA_1221
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_1:9274..10298 +

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Properties
Property NameValue
TranscriptId571464
TrackFilteredModels2
ProteinId571378
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:9274..10298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571378gene_1221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571378mRNA_1221-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1221CDS_1221Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1221 ID=mRNA_1221|Name=jgi.p|Nanoce1779_2|571378|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
CGATCGGAATATGGGGGTTTGGTGATGCCTTCCACGGTACACTGTCGGCC
TGCTTAGGCACGCGCCATTGATTGAAAACCCCTCCACGAGTTGCTGAAGT
CTTTTTGGTATGTCTTCCTTTAGAAGGCCGCCAACAAGGACTTACTGCGC
CCTTGATTTCTCTTTTCTTTTATGTGGCCAGGCGTGCATCTACATCTCCC
CTCTCATCCTTCACAGCACTCCTTGTTCCACAGACTTCACCATTACCCAA
TTCGCCTTGTGCATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCAC
CATGCGCTTGAATGAAAAGGTACGTGCGCGTGCGCAGTTTATATATCGGA
TCCTTTCTCTCCTCCCGTTCACACCAACTTCGGACGGCTTGCAGACGACC
GCGTTGCTACTCACAGGTCGTCGACCCGACGCTCCACCGTACCTGGGGCC
AGGAGCATCAGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCTTTGTG
ACCTGGAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTGACATG
ACGACGACGCACACGGTGCCGCCCAGCCATATCGCAGGGCTACTGCGGCA
GGAGATTGCCAGGCAGAAAAATCTGATCGCTCAGGACGCTGCCCGTTTCC
AGTCTTTTCAGGCGTCCCTGTTCTACACCCAACAAATCTATGAGCATGGC
CTTAAAAAGGTAGAGAAATGCGCGACATCGAAGGTATACAATAAGGAGAT
GAATGGCATGTTGAAAGACACCATCCGACGGACACTGGAAGGGTTGCGAG
CTGGAGGAGAGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAGGAGGA
GAAGGAGGAGGAGAAGGAGAAGAAGGGGGGGGAGTGAACGAGGAGGGGGG
GGAAGATTCTTGATGTGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|571378

>mRNA_1221-protein ID=mRNA_1221-protein|Name=jgi.p|Nanoce1779_2|571378|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MSSFRRPPTRTYCALDFSFLLCGQACIYISPLILHSTPCSTDFTITQFAL
CMDATRSLEDAQRTMRLNEKVRARAQFIYRILSLLPFTPTSDGLQTTALL
LTGRRPDAPPYLGPGASESSSEATYLSLLCDLEEAKKKGRKGCGTDMTTT
HTVPPSHIAGLLRQEIARQKNLIAQDAARFQSFQASLFYTQQIYEHGLKK
VEKCATSKVYNKEMNGMLKDTIRRTLEGLRAGGEGGEIGGGGGGEGGEGG
GEGEEGGGVNEEGGEDS*
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mRNA from alignment at scaffold_1:9274..10298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1221 ID=mRNA_1221|Name=jgi.p|Nanoce1779_2|571378|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_1:9274..10298+ (Nannochloropsis oceanica)
CGATCGGAATATGGGGGTTTGGTGATGCCTTCCACGGTACACTGTCGGCC
TGCTTAGGCACGCGCCATTGATTGAAAACCCCTCCACGAGTTGCTGAAGT
CTTTTTGGTATGTCTTCCTTTAGAAGGCCGCCAACAAGGACTTACTGCGC
CCTTGATTTCTCTTTTCTTTTATGTGGCCAGGCGTGCATCTACATCTCCC
CTCTCATCCTTCACAGCACTCCTTGTTCCACAGACTTCACCATTACCCAA
TTCGCCTTGTGCATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCAC
CATGCGCTTGAATGAAAAGGTACGTGCGCGTGCGCAGTTTATATATCGGA
TCCTTTCTCTCCTCCCGTTCACACCAACTTCGGACGGCTTGCAGACGACC
GCGTTGCTACTCACAGGTCGTCGACCCGACGCTCCACCGTACCTGGGGCC
AGGAGCATCAGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCTTTGTG
ACCTGGAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTGACATG
ACGACGACGCACACGGTGCCGCCCAGCCATATCGCAGGGCTACTGCGGCA
GGAGATTGCCAGGCAGAAAAATCTGGTACGTTTCATCATCCTCAAGTCCT
TATCCACATCTACATTCCTTTTTCCTGACTTCTCCTCTCTCCCTTCCCTC
CTACCTCTCTTCCTCCTCCCATTTTTAGATCGCTCAGGACGCTGCCCGTT
TCCAGTCTTTTCAGGCGTCCCTGTTCTACACCCAACAAATCTATGAGCAT
GGCCTTAAAAAGGTAGAGAAATGCGCGACATCGAAGGTATACAATAAGGA
GATGAATGGCATGTTGAAAGACACCATCCGACGGACACTGGAAGGGTTGC
GAGCTGGAGGAGAGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAGGA
GGAGAAGGAGGAGGAGAAGGAGAAGAAGGGGGGGGAGTGAACGAGGAGGG
GGGGGAAGATTCTTGATGTGAGTAG
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Coding sequence (CDS) from alignment at scaffold_1:9274..10298+

>mRNA_1221 ID=mRNA_1221|Name=jgi.p|Nanoce1779_2|571378|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_1:9274..10298+ (Nannochloropsis oceanica)
ATGTCTTCCTTTAGAAGGCCGCCAACAAGGACTTACTGCGCCCTTGATTT
CTCTTTTCTTTTATGTGGCCAGGCGTGCATCTACATCTCCCCTCTCATCC
TTCACAGCACTCCTTGTTCCACAGACTTCACCATTACCCAATTCGCCTTG
TGCATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCACCATGCGCTT
GAATGAAAAGGTACGTGCGCGTGCGCAGTTTATATATCGGATCCTTTCTC
TCCTCCCGTTCACACCAACTTCGGACGGCTTGCAGACGACCGCGTTGCTA
CTCACAGGTCGTCGACCCGACGCTCCACCGTACCTGGGGCCAGGAGCATC
AGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCTTTGTGACCTGGAAG
AGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTGACATGACGACGACG
CACACGGTGCCGCCCAGCCATATCGCAGGGCTACTGCGGCAGGAGATTGC
CAGGCAGAAAAATCTGATCGCTCAGGACGCTGCCCGTTTCCAGTCTTTTC
AGGCGTCCCTGTTCTACACCCAACAAATCTATGAGCATGGCCTTAAAAAG
GTAGAGAAATGCGCGACATCGAAGGTATACAATAAGGAGATGAATGGCAT
GTTGAAAGACACCATCCGACGGACACTGGAAGGGTTGCGAGCTGGAGGAG
AGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGA
GGAGAAGGAGAAGAAGGGGGGGGAGTGAACGAGGAGGGGGGGGAAGATTC
TTGAATGTCTTCCTTTAGAAGGCCGCCAACAAGGACTTACTGCGCCCTTG
ATTTCTCTTTTCTTTTATGTGGCCAGGCGTGCATCTACATCTCCCCTCTC
ATCCTTCACAGCACTCCTTGTTCCACAGACTTCACCATTACCCAATTCGC
CTTGTGCATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCACCATGC
GCTTGAATGAAAAGGTACGTGCGCGTGCGCAGTTTATATATCGGATCCTT
TCTCTCCTCCCGTTCACACCAACTTCGGACGGCTTGCAGACGACCGCGTT
GCTACTCACAGGTCGTCGACCCGACGCTCCACCGTACCTGGGGCCAGGAG
CATCAGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCTTTGTGACCTG
GAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTGACATGACGAC
GACGCACACGGTGCCGCCCAGCCATATCGCAGGGCTACTGCGGCAGGAGA
TTGCCAGGCAGAAAAATCTGATCGCTCAGGACGCTGCCCGTTTCCAGTCT
TTTCAGGCGTCCCTGTTCTACACCCAACAAATCTATGAGCATGGCCTTAA
AAAGGTAGAGAAATGCGCGACATCGAAGGTATACAATAAGGAGATGAATG
GCATGTTGAAAGACACCATCCGACGGACACTGGAAGGGTTGCGAGCTGGA
GGAGAGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGG
AGGAGGAGAAGGAGAAGAAGGGGGGGGAGTGAACGAGGAGGGGGGGGAAG
ATTCTTGA
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Synonyms
Publications