jgi.p|Nanoce1779_2|576293, mRNA_122 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576293
Unique Name	mRNA_122
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1551
Alignment location	scaffold_3:323568..325140 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576379
Track	FilteredModels2
ProteinId	576293

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:323568..325140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576293	gene_122	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576293	mRNA_122-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_122	CDS_122	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:323568..325140+
coding sequence from alignment at scaffold_3:323568..325140+

mRNA sequence

>mRNA_122 ID=mRNA_122|Name=jgi.p|Nanoce1779_2|576293|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
AGCATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTA
CCTGGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGC
GCTGGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCC
GGCTTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTCC
ATTTTTGGGGGTAGTGACAGCGGTGCTCTTGGGATGGGATGGTTTCATCA
TCCATCGCATCTGGCGTCAGTTTGTGGTTGGACCGCGCTTCGAGACCGTG
GACCTGCGTGGGAAAACGGCTATCGTAACAGGCGCCAACACAGGAATCGG
ACGGGAGACATCGCGCTGTCTAGCAGAGATGGGTGCACAGGTCATTTTGG
CGTGTCGATCGCGGGCGCGGGCGGAGGAGGCCATTCGTGTGATTTTGAAG
GAGGCAGGAACTAAAATTGACCCTTGTCAACTAGAGTTCTGGACACTGGA
CGTGAGCAGCTTGCAGTCTGTGGGAGACTTTGCGGCAATCTTCCAGGAGA
GAAAAGGGGATGGCGGACTGGATATTTTGATTAACAATGCAGGGGTGATG
CTCAATGAGAAGATGGTAACGTCGGAAGGCTTGGAAGCAACGATGGCGAC
TAACCATTATGGGCACTTCCTCCTGACTTTACTACTCTTCCCAGAGCTAG
ATAAAGTTTCAGATGGACGCATCGTTAATGTCTCCTCCAGCTTGCACAAG
GCACCGACTTCCTTTAATTTTGACGATCCTCTTTATGAGTCCAGCGCGTA
TAGCCTCTTTGGTGCTTATGGGCAGAGCAAGTTAGCCAATGTTTTGTTCA
CTTTCGAATTACAACGACGCTTGGACGCACTACAACGGGATCGGGCCAAG
ATTATCGGAAGGCGAGGGGGAAGAGATGGAGGAGGGAAGGTGATGACGGC
CAACGCCGTACATCCAGGGAATGTCCAGACAGAGGTAGCCCGGAATATGG
CATGGCCCTTTTATTGGGGTCAGCGATTGTGCAGTCCTTTGTTGTGGTGT
TTCTCGAAAAATCCATTGCAGGGTGCTTATACCTCTGTGCATGCTGCGAC
TGCCCCGAGTTTGAGGGGGGTGGGTGGGTTGTATTTTGTGAACAGTGAGG
CGACAGCTGACGTGTCTGCTGTGGCGAAGGATCCGCAGGTTGCCGAGAGA
CTATGGGAGATGAGTGAGGGTGTGTGTGGCTTGGCCACTCCCGCAGCAGG
TACAGAGCCAGTAGCCATGGCGGCGGCACCAGCCATAGCAAAGAAAAGCT
CGCCGACGAGAAGGAGAAGGGAAAGCGTGAGTGCCGGTGCCAACACACCT
GGTAAAAAGGCGATGACGCCGAAGAAAAGTGATGTTGCGAATGGTGGGGG
GAATGGTGGGCGGAAGAGCAAGTCCCCGGCAAGGAGACGGAGTGGAAAAG
TGAATTGACAAAAAGTGGGAAATGTTGGTGGTGCTGGTGTCGAGGGGTGG
AAGAAAAGAAAGCAGCAGTGCTTGTGTGGAAAAGAAAAAGAGGGTAAATA
A

protein sequence of jgi.p|Nanoce1779_2|576293

>mRNA_122-protein ID=mRNA_122-protein|Name=jgi.p|Nanoce1779_2|576293|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MLLSCSAAFSQLEALYLAGGLASLYAILVGLWRWGTYEARTPETYVPLAG
LAVAPLLPFLPLALFPFLGVVTAVLLGWDGFIIHRIWRQFVVGPRFETVD
LRGKTAIVTGANTGIGRETSRCLAEMGAQVILACRSRARAEEAIRVILKE
AGTKIDPCQLEFWTLDVSSLQSVGDFAAIFQERKGDGGLDILINNAGVML
NEKMVTSEGLEATMATNHYGHFLLTLLLFPELDKVSDGRIVNVSSSLHKA
PTSFNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRLDALQRDRAKI
IGRRGGRDGGGKVMTANAVHPGNVQTEVARNMAWPFYWGQRLCSPLLWCF
SKNPLQGAYTSVHAATAPSLRGVGGLYFVNSEATADVSAVAKDPQVAERL
WEMSEGVCGLATPAAGTEPVAMAAAPAIAKKSSPTRRRRESVSAGANTPG
KKAMTPKKSDVANGGGNGGRKSKSPARRRSGKVN*

mRNA from alignment at scaffold_3:323568..325140+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_122 ID=mRNA_122|Name=jgi.p|Nanoce1779_2|576293|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_3:323568..325140+ (Nannochloropsis oceanica)
AGCATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTA
CCTGGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGC
GCTGGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCC
GGCTTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTGT
AGAGAAAGGAAAGACTGGAGCCATTTTTGGGGGTAGTGACAGCGGTGCTC
TTGGGATGGGATGGTTTCATCATCCATCGCATCTGGCGTCAGTTTGTGGT
TGGACCGCGCTTCGAGACCGTGGACCTGCGTGGGAAAACGGCTATCGTAA
CAGGCGCCAACACAGGAATCGGACGGGAGACATCGCGCTGTCTAGCAGAG
ATGGGTGCACAGGTCATTTTGGCGTGTCGATCGCGGGCGCGGGCGGAGGA
GGCCATTCGTGTGATTTTGAAGGAGGCAGGAACTAAAATTGACCCTTGTC
AACTAGAGTTCTGGACACTGGACGTGAGCAGCTTGCAGTCTGTGGGAGAC
TTTGCGGCAATCTTCCAGGAGAGAAAAGGGGATGGCGGACTGGATATTTT
GATTAACAATGCAGGGGTGATGCTCAATGAGAAGATGGTAACGTCGGAAG
GCTTGGAAGCAACGATGGCGACTAACCATTATGGGCACTTCCTCCTGACT
TTACTACTCTTCCCAGAGCTAGATAAAGTTTCAGATGGACGCATCGTTAA
TGTCTCCTCCAGCTTGCACAAGGCACCGACTTCCTTTAATTTTGACGATC
CTCTTTATGAGTCCAGCGCGTATAGCCTCTTTGGTGCTTATGGGCAGAGC
AAGTTAGCCAATGTTTTGTTCACTTTCGAATTACAACGACGCTTGGACGC
ACTACAACGGGATCGGGCCAAGATTATCGGAAGGCGAGGGGGAAGAGATG
GAGGAGGGAAGGTGATGACGGCCAACGCCGTACATCCAGGGAATGTCCAG
ACAGAGGTAGCCCGGAATATGGCATGGCCCTTTTATTGGGGTCAGCGATT
GTGCAGTCCTTTGTTGTGGTGTTTCTCGAAAAATCCATTGCAGGGTGCTT
ATACCTCTGTGCATGCTGCGACTGCCCCGAGTTTGAGGGGGGTGGGTGGG
TTGTATTTTGTGAACAGTGAGGCGACAGCTGACGTGTCTGCTGTGGCGAA
GGATCCGCAGGTTGCCGAGAGACTATGGGAGATGAGTGAGGGTGTGTGTG
GCTTGGCCACTCCCGCAGCAGGTACAGAGCCAGTAGCCATGGCGGCGGCA
CCAGCCATAGCAAAGAAAAGCTCGCCGACGAGAAGGAGAAGGGAAAGCGT
GAGTGCCGGTGCCAACACACCTGGTAAAAAGGCGATGACGCCGAAGAAAA
GTGATGTTGCGAATGGTGGGGGGAATGGTGGGCGGAAGAGCAAGTCCCCG
GCAAGGAGACGGAGTGGAAAAGTGAATTGACAAAAAGTGGGAAATGTTGG
TGGTGCTGGTGTCGAGGGGTGGAAGAAAAGAAAGCAGCAGTGCTTGTGTG
GAAAAGAAAAAGAGGGTAAATAA

Coding sequence (CDS) from alignment at scaffold_3:323568..325140+

>mRNA_122 ID=mRNA_122|Name=jgi.p|Nanoce1779_2|576293|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_3:323568..325140+ (Nannochloropsis oceanica)
ATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTACCT
GGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGCGCT
GGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCCGGC
TTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTCCATT
TTTGGGGGTAGTGACAGCGGTGCTCTTGGGATGGGATGGTTTCATCATCC
ATCGCATCTGGCGTCAGTTTGTGGTTGGACCGCGCTTCGAGACCGTGGAC
CTGCGTGGGAAAACGGCTATCGTAACAGGCGCCAACACAGGAATCGGACG
GGAGACATCGCGCTGTCTAGCAGAGATGGGTGCACAGGTCATTTTGGCGT
GTCGATCGCGGGCGCGGGCGGAGGAGGCCATTCGTGTGATTTTGAAGGAG
GCAGGAACTAAAATTGACCCTTGTCAACTAGAGTTCTGGACACTGGACGT
GAGCAGCTTGCAGTCTGTGGGAGACTTTGCGGCAATCTTCCAGGAGAGAA
AAGGGGATGGCGGACTGGATATTTTGATTAACAATGCAGGGGTGATGCTC
AATGAGAAGATGGTAACGTCGGAAGGCTTGGAAGCAACGATGGCGACTAA
CCATTATGGGCACTTCCTCCTGACTTTACTACTCTTCCCAGAGCTAGATA
AAGTTTCAGATGGACGCATCGTTAATGTCTCCTCCAGCTTGCACAAGGCA
CCGACTTCCTTTAATTTTGACGATCCTCTTTATGAGTCCAGCGCGTATAG
CCTCTTTGGTGCTTATGGGCAGAGCAAGTTAGCCAATGTTTTGTTCACTT
TCGAATTACAACGACGCTTGGACGCACTACAACGGGATCGGGCCAAGATT
ATCGGAAGGCGAGGGGGAAGAGATGGAGGAGGGAAGGTGATGACGGCCAA
CGCCGTACATCCAGGGAATGTCCAGACAGAGGTAGCCCGGAATATGGCAT
GGCCCTTTTATTGGGGTCAGCGATTGTGCAGTCCTTTGTTGTGGTGTTTC
TCGAAAAATCCATTGCAGGGTGCTTATACCTCTGTGCATGCTGCGACTGC
CCCGAGTTTGAGGGGGGTGGGTGGGTTGTATTTTGTGAACAGTGAGGCGA
CAGCTGACGTGTCTGCTGTGGCGAAGGATCCGCAGGTTGCCGAGAGACTA
TGGGAGATGAGTGAGGGTGTGTGTGGCTTGGCCACTCCCGCAGCAGGTAC
AGAGCCAGTAGCCATGGCGGCGGCACCAGCCATAGCAAAGAAAAGCTCGC
CGACGAGAAGGAGAAGGGAAAGCGTGAGTGCCGGTGCCAACACACCTGGT
AAAAAGGCGATGACGCCGAAGAAAAGTGATGTTGCGAATGGTGGGGGGAA
TGGTGGGCGGAAGAGCAAGTCCCCGGCAAGGAGACGGAGTGGAAAAGTGA
ATTGAATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTT
TACCTGGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTG
GCGCTGGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGG
CCGGCTTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTT
CCATTTTTGGGGGTAGTGACAGCGGTGCTCTTGGGATGGGATGGTTTCAT
CATCCATCGCATCTGGCGTCAGTTTGTGGTTGGACCGCGCTTCGAGACCG
TGGACCTGCGTGGGAAAACGGCTATCGTAACAGGCGCCAACACAGGAATC
GGACGGGAGACATCGCGCTGTCTAGCAGAGATGGGTGCACAGGTCATTTT
GGCGTGTCGATCGCGGGCGCGGGCGGAGGAGGCCATTCGTGTGATTTTGA
AGGAGGCAGGAACTAAAATTGACCCTTGTCAACTAGAGTTCTGGACACTG
GACGTGAGCAGCTTGCAGTCTGTGGGAGACTTTGCGGCAATCTTCCAGGA
GAGAAAAGGGGATGGCGGACTGGATATTTTGATTAACAATGCAGGGGTGA
TGCTCAATGAGAAGATGGTAACGTCGGAAGGCTTGGAAGCAACGATGGCG
ACTAACCATTATGGGCACTTCCTCCTGACTTTACTACTCTTCCCAGAGCT
AGATAAAGTTTCAGATGGACGCATCGTTAATGTCTCCTCCAGCTTGCACA
AGGCACCGACTTCCTTTAATTTTGACGATCCTCTTTATGAGTCCAGCGCG
TATAGCCTCTTTGGTGCTTATGGGCAGAGCAAGTTAGCCAATGTTTTGTT
CACTTTCGAATTACAACGACGCTTGGACGCACTACAACGGGATCGGGCCA
AGATTATCGGAAGGCGAGGGGGAAGAGATGGAGGAGGGAAGGTGATGACG
GCCAACGCCGTACATCCAGGGAATGTCCAGACAGAGGTAGCCCGGAATAT
GGCATGGCCCTTTTATTGGGGTCAGCGATTGTGCAGTCCTTTGTTGTGGT
GTTTCTCGAAAAATCCATTGCAGGGTGCTTATACCTCTGTGCATGCTGCG
ACTGCCCCGAGTTTGAGGGGGGTGGGTGGGTTGTATTTTGTGAACAGTGA
GGCGACAGCTGACGTGTCTGCTGTGGCGAAGGATCCGCAGGTTGCCGAGA
GACTATGGGAGATGAGTGAGGGTGTGTGTGGCTTGGCCACTCCCGCAGCA
GGTACAGAGCCAGTAGCCATGGCGGCGGCACCAGCCATAGCAAAGAAAAG
CTCGCCGACGAGAAGGAGAAGGGAAAGCGTGAGTGCCGGTGCCAACACAC
CTGGTAAAAAGGCGATGACGCCGAAGAAAAGTGATGTTGCGAATGGTGGG
GGGAATGGTGGGCGGAAGAGCAAGTCCCCGGCAAGGAGACGGAGTGGAAA
AGTGAATTGA

Synonyms

Publications