jgi.p|Nanoce1779_2|575813, mRNA_1217 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575813
Unique NamemRNA_1217
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length345
Alignment locationscaffold_2:1531660..1532004 +

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Properties
Property NameValue
TranscriptId575899
TrackFilteredModels2
ProteinId575813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1531660..1532004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575813gene_1217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575813mRNA_1217-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1217CDS_1217Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1217 ID=mRNA_1217|Name=jgi.p|Nanoce1779_2|575813|organism=Nannochloropsis oceanica|type=mRNA|length=345bp
CCCCGATGCCGGAGGCTGGATGCGGCTGCAGCTTCTGCTGCTGCTGCTGC
TCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGAG
AGTAGACAGCTCCTCCCCCCTTTCCCCGATACCTTCCCCTCCGGCCTTTC
GCAGGCCTTCCCTCTCTCCATCTATCTCGACCACCTCTCCAGCTCTGTAA
AGGTCCTCTTCTTCCCTCCCTCCCTCCATCCTTCCATCCTCCGCCCTCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCTTCCCTCCACCGATGGCT
CTGCCTCCATCAGCCTCTTTTCTCTTCCGTATAATATGTCCGGTC
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protein sequence of jgi.p|Nanoce1779_2|575813

>mRNA_1217-protein ID=mRNA_1217-protein|Name=jgi.p|Nanoce1779_2|575813|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MRLQLLLLLLLLLLLLLLLLLLLLLLESRQLLPPFPDTFPSGLSQAFPLS
IYLDHLSSSVKVLFFPPSLHPSILRPLLLLLLLLLLPPSLHRWLCLHQPL
FSSV*
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mRNA from alignment at scaffold_2:1531660..1532004+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1217 ID=mRNA_1217|Name=jgi.p|Nanoce1779_2|575813|organism=Nannochloropsis oceanica|type=mRNA|length=345bp|location=Sequence derived from alignment at scaffold_2:1531660..1532004+ (Nannochloropsis oceanica)
CCCCGATGCCGGAGGCTGGATGCGGCTGCAGCTTCTGCTGCTGCTGCTGC
TCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGAG
AGTAGACAGCTCCTCCCCCCTTTCCCCGATACCTTCCCCTCCGGCCTTTC
GCAGGCCTTCCCTCTCTCCATCTATCTCGACCACCTCTCCAGCTCTGTAA
AGGTCCTCTTCTTCCCTCCCTCCCTCCATCCTTCCATCCTCCGCCCTCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCTTCCCTCCACCGATGGCT
CTGCCTCCATCAGCCTCTTTTCTCTTCCGTATAATATGTCCGGTC
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Coding sequence (CDS) from alignment at scaffold_2:1531660..1532004+

>mRNA_1217 ID=mRNA_1217|Name=jgi.p|Nanoce1779_2|575813|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_2:1531660..1532004+ (Nannochloropsis oceanica)
ATGCGGCTGCAGCTTCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGGAGAGTAGACAGCTCCTCCCCC
CTTTCCCCGATACCTTCCCCTCCGGCCTTTCGCAGGCCTTCCCTCTCTCC
ATCTATCTCGACCACCTCTCCAGCTCTGTAAAGGTCCTCTTCTTCCCTCC
CTCCCTCCATCCTTCCATCCTCCGCCCTCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCCCCCTTCCCTCCACCGATGGCTCTGCCTCCATCAGCCTCTT
TTCTCTTCCGTATAA
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Synonyms
Publications