jgi.p|Nanoce1779_2|155954, mRNA_1214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|155954
Unique NamemRNA_1214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length377
Alignment locationscaffold_2:1524589..1524965 +

Link to JBrowse

Properties
Property NameValue
TranscriptId156040
TrackFilteredModels2
ProteinId155954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1524589..1524965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155954gene_1214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155954mRNA_1214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1214CDS_1214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1214 ID=mRNA_1214|Name=jgi.p|Nanoce1779_2|155954|organism=Nannochloropsis oceanica|type=mRNA|length=377bp
GGGTTTGGATGGGTAAAAATTGAATGGGGTAGACAATAAGCTCTTGGTAC
AGGCAGAGGTAAACAAAGTTAAACCCCAGTTACGAAGCCTGCAATGCGTG
TCCTTGTCCACAAGGCACCGAATCTTGTGTGTCGGCTTTTTGTTGCGTCC
CCCATCCATCTGGCACTCGCTCTTTTGCTCTCGAGGAACATCGCTGTCAA
GTCCATACATGACAACAACACATTTTCACACCTTATCCAGCCACTACACC
TCACCACGTACAGCCGTTCAACGCCAAAGAAGTCACGAAGCAAAATGGGT
ATTAGTACTTGAAATGAGAGATGATTTCTTTTGCTATTGCTCCCTGTTCT
CGTGTTCTCCTTCCACCCTACCTTCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|155954

>mRNA_1214-protein ID=mRNA_1214-protein|Name=jgi.p|Nanoce1779_2|155954|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MRVLVHKAPNLVCRLFVASPIHLALALLLSRNIAVKSIHDNNTFSHLIQP
LHLTTYSRSTPKKSRSKMGIST*
back to top

mRNA from alignment at scaffold_2:1524589..1524965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1214 ID=mRNA_1214|Name=jgi.p|Nanoce1779_2|155954|organism=Nannochloropsis oceanica|type=mRNA|length=377bp|location=Sequence derived from alignment at scaffold_2:1524589..1524965+ (Nannochloropsis oceanica)
GGGTTTGGATGGGTAAAAATTGAATGGGGTAGACAATAAGCTCTTGGTAC
AGGCAGAGGTAAACAAAGTTAAACCCCAGTTACGAAGCCTGCAATGCGTG
TCCTTGTCCACAAGGCACCGAATCTTGTGTGTCGGCTTTTTGTTGCGTCC
CCCATCCATCTGGCACTCGCTCTTTTGCTCTCGAGGAACATCGCTGTCAA
GTCCATACATGACAACAACACATTTTCACACCTTATCCAGCCACTACACC
TCACCACGTACAGCCGTTCAACGCCAAAGAAGTCACGAAGCAAAATGGGT
ATTAGTACTTGAAATGAGAGATGATTTCTTTTGCTATTGCTCCCTGTTCT
CGTGTTCTCCTTCCACCCTACCTTCCC
back to top

Coding sequence (CDS) from alignment at scaffold_2:1524589..1524965+

>mRNA_1214 ID=mRNA_1214|Name=jgi.p|Nanoce1779_2|155954|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_2:1524589..1524965+ (Nannochloropsis oceanica)
ATGCGTGTCCTTGTCCACAAGGCACCGAATCTTGTGTGTCGGCTTTTTGT
TGCGTCCCCCATCCATCTGGCACTCGCTCTTTTGCTCTCGAGGAACATCG
CTGTCAAGTCCATACATGACAACAACACATTTTCACACCTTATCCAGCCA
CTACACCTCACCACGTACAGCCGTTCAACGCCAAAGAAGTCACGAAGCAA
AATGGGTATTAGTACTTGA
back to top
Synonyms
Publications