jgi.p|Nanoce1779_2|575780, mRNA_1212 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575780
Unique Name	mRNA_1212
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1487
Alignment location	scaffold_2:1514508..1516760 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575866
Track	FilteredModels2
ProteinId	575780

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1514508..1516760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575780	gene_1212	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575780	mRNA_1212-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1212	CDS_1212	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1514508..1516760+
coding sequence from alignment at scaffold_2:1514508..1516760+

mRNA sequence

>mRNA_1212 ID=mRNA_1212|Name=jgi.p|Nanoce1779_2|575780|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
CAGGAGAGCATCGTTGTCGCTACTCCGCCGTCTCGAGCCGGGTGGTCGTC
GTCGTTGCCTCTGCACCTTGAAAAAAACAACCGACACCAAACGGACCACC
TTCCTTCCCCGCTTCGACTTCCGCGCCTGAATACGCCTTCCCTGTCATCC
AGGACCCAGCCAACACGCCGGAATCATGCCACGTTCTTGCGCCACGACAG
GTGCAAGGCTGACCCGAGCCACCACCACGCTCGTGATATCTTTCATTCTC
GTCATCCTCCTTTGTCCATGCCTCATCCTCCTCACCGCCGCGGCCTCGGC
CTCCTCCACGGCGCCTCCGCTGGATGCGACCTGCACCGGCAGTACTGCAT
CCCGAACGGCGGGAATACCCTTGGCCCCGGTGATTGCCGGGTGGTTCCAG
TCTTCGGCCTCCTCCAAGCACCACAAGACGGAGAAGAAGCGGCAGCTCCT
CCAGCAGCAGCTCGAGCAACAGCAGCGACAAGAAGGAGACGGCAAGAGTG
CCGAGTCGGTGACCGTGGCCTTTGTTCAAAGTGGGAAAGACAGAGGGCTA
GGAGTGGTGCGTGTGTTTGCCTCCACGCTGCGAGCATCTTTCGTCCCGTT
GGTCCAGGGTGTCATCACTCTTTTCAGTGTGGTGGCCCGGACAGTGGAAT
GGGGGCTGGTCAAGGCTCCCAGGGCGGCCACAGGGAAGATTGGAAAGAGT
ATTGGCCAGGCCTGGGCATCGATCCTATCCCTTGCTCAAGCAGAAATTCG
CGCTGAGGGCGGCGTCCGCGCCTACAACCTACCCAAGGAGACTGGCGTCT
TTCTCACCCACACGGCCAAACGGATCGGTCATGGCGTGGTTGGGGCTGCT
GCTACCGCTGGCCAGCGCGTCCATTATGGCGCGAAACACGTGCATGGCCA
CCTCAAAACCCGCGTGGCCCCACCAGCCGCTCGATTTGGCAAGGCGGTGG
ATGCGGTCGCCTCCGGTCTTTCGGAGCTTGCCCGGAAGGTCTCGGCCAAG
GGTGAGTCTCCCTCCCAGGCTGCCGAGAAGGTGCTGGAGGAGGCTTCCCT
CAGGGCTGCTGCCTCCTTTCTCCTGCGGAAGAAGGGAGGGAGGGACGGAG
CGAGGGAGGGAGGGGAGGAAAGTAGGTGGTGTGCGCCCACCCCGTCGAGG
AGTCAGTCCAAGGTGGGCCTCGCACGAGCGAGGGAAGGAAGGGAGGGAAG
GGAAGATGAAAATATGGTCATTTGAATATTTCTGATGCGTCTCAATGAGT
ACCAACATCTGTTGAACCTCCTTCCTCCCTCTCTCCTTTCCTCCCTCCCT
CCCTGCTACTCAGACTCCCAAGAAGGGGAAGGCGGCGACTGCGTCCACCA
TGTCCCTCTCCAAGAAGATCAGCGAGAAGAAGAAGAAAGAGAAAGAGACG
CAGCAGCAGTACGACAAACACCAGCAGCAGCAGCAGTCGAGTGAGGAGGA
GGACGACTGGGCCGCGCAAGGAAAGCAGGTACGTGCC

protein sequence of jgi.p|Nanoce1779_2|575780

>mRNA_1212-protein ID=mRNA_1212-protein|Name=jgi.p|Nanoce1779_2|575780|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MPRSCATTGARLTRATTTLVISFILVILLCPCLILLTAAASASSTAPPLD
ATCTGSTASRTAGIPLAPVIAGWFQSSASSKHHKTEKKRQLLQQQLEQQQ
RQEGDGKSAESVTVAFVQSGKDRGLGVVRVFASTLRASFVPLVQGVITLF
SVVARTVEWGLVKAPRAATGKIGKSIGQAWASILSLAQAEIRAEGGVRAY
NLPKETGVFLTHTAKRIGHGVVGAAATAGQRVHYGAKHVHGHLKTRVAPP
AARFGKAVDAVASGLSELARKVSAKGESPSQAAEKVLEEASLRAAASFLL
RKKGGRDGAREGGEESRWCAPTPSRSQSKVGLARAREGREGREDENMVI*

mRNA from alignment at scaffold_2:1514508..1516760+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1212 ID=mRNA_1212|Name=jgi.p|Nanoce1779_2|575780|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp|location=Sequence derived from alignment at scaffold_2:1514508..1516760+ (Nannochloropsis oceanica)
CAGGAGAGCATCGTTGTCGCTACTCCGCCGTCTCGAGCCGGGTGGTCGTC
GTCGTTGCCTCTGCACCTTGAAAAAAACAACCGACACCAAACGGACCACC
TTCCTTCCCCGCTTCGACTTCCGCGCCTGAATACGCCTTCCCTGTCATCC
AGGACCCAGCCAACACGCCGGAATCATGCCACGTTCTTGCGCCACGACAG
GTGCAAGGCTGACCCGAGCCACCACCACGCTCGTGATATCTTTCATTCTC
GTCATCCTCCTTTGTCCATGCCTCATCCTCCTCACCGCCGCGGCCTCGGC
CTCCTCCACGGCGCCTCCGCTGGATGCGACCTGCACCGGCAGTACTGCAT
CCCGAACGGCGGGAATACCCTTGGCCCCGGTGATTGCCGGGTGGTTCCAG
TCTTCGGCCTCCTCCAAGCACCACAAGACGGAGAAGAAGCGGCAGCTCCT
CCAGCAGCAGCTCGAGCAACAGCAGCGACAAGAAGGAGACGGCAAGAGTG
CCGAGTCGGTGACCGTGGCCTTTGTTCAAAGTGGGAAAGACAGAGGGCTA
GGAGTGGTGCGTGTGTTTGCCTCCACGCTGCGAGCATCTTTCGTCCCGTT
GGTCCAGGGTGTCATCACTCTTTTCAGTGTGGTGGCCCGGACAGTGGAAT
GGGGGCTGGTCAAGGCTCCCAGGGCGGCCACAGGGAAGATTGGAAAGAGT
ATTGGCCAGGTGAGCATGAGGGGCGAGAGGGAGGGAGGGAAGATTGGGAG
TTTAGAAGAGAAGGAGGGGATGTGTATGCTACCTCCCCGACCTATCGGTT
GGTTTCCTCTTTTGACTGAGGAAGTCTGTGTTTGCTGGTCCGATGCAAGG
GAGAAGAGGAAAGAAAAACTCAAAAAATAAATGAGGGAGGAGGAAAGAGG
GACAGTAAGTATCTTTTTCTGCATCGTGGCTCTCTACCAGCTGCCGCACA
CAATTTATGTAGCTGACGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTTCTCCTCGCTCAGGCCTGGGCATCGATCCTATCCCT
TGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTACAACCTAC
CCAAGGCACGTGACCTTCTGCGTCCTCCTCCCCTCCCCTCCTTTACCCCA
TCCCTCCTTCATTTTTTGTTTCTCCGGGCGAGTAGGCTCACTCACTTACT
CCCTCTCCCCCTCTCCATGCAGGAGACTGGCGTCTTTCTCACCCACACGG
CCAAACGGATCGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAG
CGCGTCCATTATGGCGCGAAACACGTGCATGGCCACCTCAAGTGAGTGGC
GGGAGGGAGGGAGGGAGGGAGGGAAGGCGAGAGCTCGATGTTGTTCTCAT
GTGTACGGTGTAGTCTAATACTCACGTTTAAAATTCATCCTTTTCCCCCT
TCTCCGCCTGCTGTTGCTGTCGTTGTCGCTCCTACAGAACCCGCGTGGCC
CCACCAGCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCT
TTCGGAGCTTGCCCGGAAGGTTAGAGATTGTCCGCCCTCCCTCCCTCCTT
CCCTCCCTTCATTCCGACTGTTCTCCCCCCCTCCCTCCCTTTCCCTCCTT
TCGTTCTGCCTGTTTCCCCACCTTGTGCGATATCCTCTTCCCCCCCCCCC
CCCCCCCCTTTCCCTCCCTTCCAAAGGTCTCGGCCAAGGGTGAGTCTCCC
TCCCAGGCTGCCGAGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGC
CTCCTTTCTCCTGCGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAG
GGGAGGAAAGTAGGTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAG
GTGGGCCTCGCACGAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAA
TATGGTCATTTGAATATTTCTGATGCGTCTCAATGAGTACCAACATCTGT
TGAACCTCCTTCCTCCCTCTCTCCTTTCCTCCCTCCCTCCATCCCTCCCT
CCCTCCCTCCCTCCCTCCCTGCTACTCAGACTCCCAAGAAGGGGAAGGCG
GCGACTGCGTCCACCATGTCCCTCTCCAAGAAGATCAGCGAGAAGAAGAA
GAAAGAGAAAGAGACGCAGCAGCAGTACGACAAACACCAGCAGCAGCAGC
AGTCGAGTGAGGAGGAGGACGACTGGGCCGCGCAAGGAAAGCAGGTACGT
GCC

Coding sequence (CDS) from alignment at scaffold_2:1514508..1516760+

>mRNA_1212 ID=mRNA_1212|Name=jgi.p|Nanoce1779_2|575780|organism=Nannochloropsis oceanica|type=CDS|length=5250bp|location=Sequence derived from alignment at scaffold_2:1514508..1516760+ (Nannochloropsis oceanica)
ATGCCACGTTCTTGCGCCACGACAGGTGCAAGGCTGACCCGAGCCACCAC
CACGCTCGTGATATCTTTCATTCTCGTCATCCTCCTTTGTCCATGCCTCA
TCCTCCTCACCGCCGCGGCCTCGGCCTCCTCCACGGCGCCTCCGCTGGAT
GCGACCTGCACCGGCAGTACTGCATCCCGAACGGCGGGAATACCCTTGGC
CCCGGTGATTGCCGGGTGGTTCCAGTCTTCGGCCTCCTCCAAGCACCACA
AGACGGAGAAGAAGCGGCAGCTCCTCCAGCAGCAGCTCGAGCAACAGCAG
CGACAAGAAGGAGACGGCAAGAGTGCCGAGTCGGTGACCGTGGCCTTTGT
TCAAAGTGGGAAAGACAGAGGGCTAGGAGTGGTGCGTGTGTTTGCCTCCA
CGCTGCGAGCATCTTTCGTCCCGTTGGTCCAGGGTGTCATCACTCTTTTC
AGTGTGGTGGCCCGGACAGTGGAATGGGGGCTGGTCAAGGCTCCCAGGGC
GGCCACAGGGAAGATTGGAAAGAGTATTGGCCAGGCCTGGGCATCGATCC
TATCCCTTGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTAC
AACCTACCCAAGGAGACTGGCGTCTTTCTCACCCACACGGCCAAACGGAT
CGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAGCGCGTCCATT
ATGGCGCGAAACACGTGCATGGCCACCTCAAAACCCGCGTGGCCCCACCA
GCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCTTTCGGA
GCTTGCCCGGAAGGTCTCGGCCAAGGGTGAGTCTCCCTCCCAGGCTGCCG
AGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGCCTCCTTTCTCCTG
CGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAGGGGAGGAAAGTAG
GTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAGGTGGGCCTCGCAC
GAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAATATGGTCATTTGA
ATGCCACGTTCTTGCGCCACGACAGGTGCAAGGCTGACCCGAGCCACCAC
CACGCTCGTGATATCTTTCATTCTCGTCATCCTCCTTTGTCCATGCCTCA
TCCTCCTCACCGCCGCGGCCTCGGCCTCCTCCACGGCGCCTCCGCTGGAT
GCGACCTGCACCGGCAGTACTGCATCCCGAACGGCGGGAATACCCTTGGC
CCCGGTGATTGCCGGGTGGTTCCAGTCTTCGGCCTCCTCCAAGCACCACA
AGACGGAGAAGAAGCGGCAGCTCCTCCAGCAGCAGCTCGAGCAACAGCAG
CGACAAGAAGGAGACGGCAAGAGTGCCGAGTCGGTGACCGTGGCCTTTGT
TCAAAGTGGGAAAGACAGAGGGCTAGGAGTGGTGCGTGTGTTTGCCTCCA
CGCTGCGAGCATCTTTCGTCCCGTTGGTCCAGGGTGTCATCACTCTTTTC
AGTGTGGTGGCCCGGACAGTGGAATGGGGGCTGGTCAAGGCTCCCAGGGC
GGCCACAGGGAAGATTGGAAAGAGTATTGGCCAGGCCTGGGCATCGATCC
TATCCCTTGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTAC
AACCTACCCAAGGAGACTGGCGTCTTTCTCACCCACACGGCCAAACGGAT
CGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAGCGCGTCCATT
ATGGCGCGAAACACGTGCATGGCCACCTCAAAACCCGCGTGGCCCCACCA
GCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCTTTCGGA
GCTTGCCCGGAAGGTCTCGGCCAAGGGTGAGTCTCCCTCCCAGGCTGCCG
AGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGCCTCCTTTCTCCTG
CGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAGGGGAGGAAAGTAG
GTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAGGTGGGCCTCGCAC
GAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAATATGGTCATTTGA
ATGCCACGTTCTTGCGCCACGACAGGTGCAAGGCTGACCCGAGCCACCAC
CACGCTCGTGATATCTTTCATTCTCGTCATCCTCCTTTGTCCATGCCTCA
TCCTCCTCACCGCCGCGGCCTCGGCCTCCTCCACGGCGCCTCCGCTGGAT
GCGACCTGCACCGGCAGTACTGCATCCCGAACGGCGGGAATACCCTTGGC
CCCGGTGATTGCCGGGTGGTTCCAGTCTTCGGCCTCCTCCAAGCACCACA
AGACGGAGAAGAAGCGGCAGCTCCTCCAGCAGCAGCTCGAGCAACAGCAG
CGACAAGAAGGAGACGGCAAGAGTGCCGAGTCGGTGACCGTGGCCTTTGT
TCAAAGTGGGAAAGACAGAGGGCTAGGAGTGGTGCGTGTGTTTGCCTCCA
CGCTGCGAGCATCTTTCGTCCCGTTGGTCCAGGGTGTCATCACTCTTTTC
AGTGTGGTGGCCCGGACAGTGGAATGGGGGCTGGTCAAGGCTCCCAGGGC
GGCCACAGGGAAGATTGGAAAGAGTATTGGCCAGGCCTGGGCATCGATCC
TATCCCTTGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTAC
AACCTACCCAAGGAGACTGGCGTCTTTCTCACCCACACGGCCAAACGGAT
CGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAGCGCGTCCATT
ATGGCGCGAAACACGTGCATGGCCACCTCAAAACCCGCGTGGCCCCACCA
GCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCTTTCGGA
GCTTGCCCGGAAGGTCTCGGCCAAGGGTGAGTCTCCCTCCCAGGCTGCCG
AGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGCCTCCTTTCTCCTG
CGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAGGGGAGGAAAGTAG
GTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAGGTGGGCCTCGCAC
GAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAATATGGTCATTTGA
ATGCCACGTTCTTGCGCCACGACAGGTGCAAGGCTGACCCGAGCCACCAC
CACGCTCGTGATATCTTTCATTCTCGTCATCCTCCTTTGTCCATGCCTCA
TCCTCCTCACCGCCGCGGCCTCGGCCTCCTCCACGGCGCCTCCGCTGGAT
GCGACCTGCACCGGCAGTACTGCATCCCGAACGGCGGGAATACCCTTGGC
CCCGGTGATTGCCGGGTGGTTCCAGTCTTCGGCCTCCTCCAAGCACCACA
AGACGGAGAAGAAGCGGCAGCTCCTCCAGCAGCAGCTCGAGCAACAGCAG
CGACAAGAAGGAGACGGCAAGAGTGCCGAGTCGGTGACCGTGGCCTTTGT
TCAAAGTGGGAAAGACAGAGGGCTAGGAGTGGTGCGTGTGTTTGCCTCCA
CGCTGCGAGCATCTTTCGTCCCGTTGGTCCAGGGTGTCATCACTCTTTTC
AGTGTGGTGGCCCGGACAGTGGAATGGGGGCTGGTCAAGGCTCCCAGGGC
GGCCACAGGGAAGATTGGAAAGAGTATTGGCCAGGCCTGGGCATCGATCC
TATCCCTTGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTAC
AACCTACCCAAGGAGACTGGCGTCTTTCTCACCCACACGGCCAAACGGAT
CGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAGCGCGTCCATT
ATGGCGCGAAACACGTGCATGGCCACCTCAAAACCCGCGTGGCCCCACCA
GCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCTTTCGGA
GCTTGCCCGGAAGGTCTCGGCCAAGGGTGAGTCTCCCTCCCAGGCTGCCG
AGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGCCTCCTTTCTCCTG
CGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAGGGGAGGAAAGTAG
GTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAGGTGGGCCTCGCAC
GAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAATATGGTCATTTGA
ATGCCACGTTCTTGCGCCACGACAGGTGCAAGGCTGACCCGAGCCACCAC
CACGCTCGTGATATCTTTCATTCTCGTCATCCTCCTTTGTCCATGCCTCA
TCCTCCTCACCGCCGCGGCCTCGGCCTCCTCCACGGCGCCTCCGCTGGAT
GCGACCTGCACCGGCAGTACTGCATCCCGAACGGCGGGAATACCCTTGGC
CCCGGTGATTGCCGGGTGGTTCCAGTCTTCGGCCTCCTCCAAGCACCACA
AGACGGAGAAGAAGCGGCAGCTCCTCCAGCAGCAGCTCGAGCAACAGCAG
CGACAAGAAGGAGACGGCAAGAGTGCCGAGTCGGTGACCGTGGCCTTTGT
TCAAAGTGGGAAAGACAGAGGGCTAGGAGTGGTGCGTGTGTTTGCCTCCA
CGCTGCGAGCATCTTTCGTCCCGTTGGTCCAGGGTGTCATCACTCTTTTC
AGTGTGGTGGCCCGGACAGTGGAATGGGGGCTGGTCAAGGCTCCCAGGGC
GGCCACAGGGAAGATTGGAAAGAGTATTGGCCAGGCCTGGGCATCGATCC
TATCCCTTGCTCAAGCAGAAATTCGCGCTGAGGGCGGCGTCCGCGCCTAC
AACCTACCCAAGGAGACTGGCGTCTTTCTCACCCACACGGCCAAACGGAT
CGGTCATGGCGTGGTTGGGGCTGCTGCTACCGCTGGCCAGCGCGTCCATT
ATGGCGCGAAACACGTGCATGGCCACCTCAAAACCCGCGTGGCCCCACCA
GCCGCTCGATTTGGCAAGGCGGTGGATGCGGTCGCCTCCGGTCTTTCGGA
GCTTGCCCGGAAGGTCTCGGCCAAGGGTGAGTCTCCCTCCCAGGCTGCCG
AGAAGGTGCTGGAGGAGGCTTCCCTCAGGGCTGCTGCCTCCTTTCTCCTG
CGGAAGAAGGGAGGGAGGGACGGAGCGAGGGAGGGAGGGGAGGAAAGTAG
GTGGTGTGCGCCCACCCCGTCGAGGAGTCAGTCCAAGGTGGGCCTCGCAC
GAGCGAGGGAAGGAAGGGAGGGAAGGGAAGATGAAAATATGGTCATTTGA

Synonyms

Publications