jgi.p|Nanoce1779_2|576291, mRNA_121 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576291
Unique NamemRNA_121
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_3:322389..323300 +

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Properties
Property NameValue
TranscriptId576377
TrackFilteredModels2
ProteinId576291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:322389..323300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576291gene_121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576291mRNA_121-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_121CDS_121Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_121 ID=mRNA_121|Name=jgi.p|Nanoce1779_2|576291|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
CAGAGATACCATCGTCATCGCCCACCCCTGCCTGATCTAGCCAAGCCGGG
ACATGGGCAAACATGTTGACGACAAGCCTAACGACCGACGTCACAGCAAT
GGCAGTGGCACCAGCAGCAAGGGGCGAGACACAAAATATGACAGTGGCGA
CGGAAGCGGCAAGCATCACAAGACGATGAAGAAGCGGAAGCGCGATGAGG
CAGACTCCCTTTCCTCTTCCTCCCCCACCTCTTCCCCCTCCTCCTCCTCT
GCCTTGTCAGCCTCAGACAACGAGAGCAGCAGTGTTTCCTCTTCCTCAAA
TTCACTAGACGAGCGAAGCAGATCCAAGAAGAAGGCCAAGACCGAGAAGG
AGGAAAAGAGAAAGTCCAAGGACAAAAAGTCCAAGAAGGAGAGTAAGAAA
CAGAGCGATAAGAAAGAGGGTAAGAAAAGGCATAAAAAGGAGCACAAGAA
AAGCATTAAAAAAAAGGAGAAGAAGCGGAAGAGGGATAGAAGCAAGAAAA
GGAAGCACTCATCGTCCTCCGTCCACGGCTGCAGCAGCGATTCGAACAGC
GACAACGACGTGCCACGCTCCGCTATTTCTGGCAAGAAGATTAAGATGAA
ATTGAAGCGTGACGCGGCGGACAAGCAGATGGAAAAGGGTCGCAAAGAGT
TTTTGCGCTTCATGAATTCTCAATATGACTAGGAAGGAGGAAGTTGTGGA
AGGGATAAAAGAATGCGATAAGCTTTCGGGAAGCTTTGGAATTGTAGAAA
ACATAGAAAAAGAAATACATGTTTTATGGGGAAATTGTCGTCTTGGCGGA
GAGCTTTTAGCAGAATGGTATT
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protein sequence of jgi.p|Nanoce1779_2|576291

>mRNA_121-protein ID=mRNA_121-protein|Name=jgi.p|Nanoce1779_2|576291|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MGKHVDDKPNDRRHSNGSGTSSKGRDTKYDSGDGSGKHHKTMKKRKRDEA
DSLSSSSPTSSPSSSSALSASDNESSSVSSSSNSLDERSRSKKKAKTEKE
EKRKSKDKKSKKESKKQSDKKEGKKRHKKEHKKSIKKKEKKRKRDRSKKR
KHSSSSVHGCSSDSNSDNDVPRSAISGKKIKMKLKRDAADKQMEKGRKEF
LRFMNSQYD*
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mRNA from alignment at scaffold_3:322389..323300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_121 ID=mRNA_121|Name=jgi.p|Nanoce1779_2|576291|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_3:322389..323300+ (Nannochloropsis oceanica)
CAGAGATACCATCGTCATCGCCCACCCCTGCCTGATCTAGCCAAGCCGGG
ACATGGGCAAACATGTTGACGACAAGCCTAACGACCGACGTCACAGCAAT
GGCAGTGGCACCAGCAGCAAGGGGCGAGACACAAAATATGACAGTGGCGA
CGGAAGCGGCAAGCATCACAAGACGATGAAGAAGCGGAAGCGCGATGAGG
CAGACTCCCTTTCCTCTTCCTCCCCCACCTCTTCCCCCTCCTCCTCCTCT
GCCTTGTCAGCCTCAGACAACGAGAGCAGCAGTGTTTCCTCTTCCTCAAA
TTCACTAGACGAGCGAAGCAGATCCAAGAAGAAGGCCAAGACCGAGAAGG
AGGAAAAGAGAAAGTCCAAGGTACGGTTTCAGGGCGAGGATGGGCTCGGG
AAATGCAGTAAGGACGGATATAAATGATGTCACCACACCCCATACTCCAC
ACAACCAAAGGACAAAAAGTCCAAGAAGGAGAGTAAGAAACAGAGCGATA
AGAAAGAGGGTAAGAAAAGGCATAAAAAGGAGCACAAGAAAAGCATTAAA
AAAAAGGAGAAGAAGCGGAAGAGGGATAGAAGCAAGAAAAGGAAGCACTC
ATCGTCCTCCGTCCACGGCTGCAGCAGCGATTCGAACAGCGACAACGACG
TGCCACGCTCCGCTATTTCTGGCAAGAAGATTAAGATGAAATTGAAGCGT
GACGCGGCGGACAAGCAGATGGAAAAGGGTCGCAAAGAGTTTTTGCGCTT
CATGAATTCTCAATATGACTAGGAAGGAGGAAGTTGTGGAAGGGATAAAA
GAATGCGATAAGCTTTCGGGAAGCTTTGGAATTGTAGAAAACATAGAAAA
AGAAATACATGTTTTATGGGGAAATTGTCGTCTTGGCGGAGAGCTTTTAG
CAGAATGGTATT
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Coding sequence (CDS) from alignment at scaffold_3:322389..323300+

>mRNA_121 ID=mRNA_121|Name=jgi.p|Nanoce1779_2|576291|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_3:322389..323300+ (Nannochloropsis oceanica)
ATGGGCAAACATGTTGACGACAAGCCTAACGACCGACGTCACAGCAATGG
CAGTGGCACCAGCAGCAAGGGGCGAGACACAAAATATGACAGTGGCGACG
GAAGCGGCAAGCATCACAAGACGATGAAGAAGCGGAAGCGCGATGAGGCA
GACTCCCTTTCCTCTTCCTCCCCCACCTCTTCCCCCTCCTCCTCCTCTGC
CTTGTCAGCCTCAGACAACGAGAGCAGCAGTGTTTCCTCTTCCTCAAATT
CACTAGACGAGCGAAGCAGATCCAAGAAGAAGGCCAAGACCGAGAAGGAG
GAAAAGAGAAAGTCCAAGGACAAAAAGTCCAAGAAGGAGAGTAAGAAACA
GAGCGATAAGAAAGAGGGTAAGAAAAGGCATAAAAAGGAGCACAAGAAAA
GCATTAAAAAAAAGGAGAAGAAGCGGAAGAGGGATAGAAGCAAGAAAAGG
AAGCACTCATCGTCCTCCGTCCACGGCTGCAGCAGCGATTCGAACAGCGA
CAACGACGTGCCACGCTCCGCTATTTCTGGCAAGAAGATTAAGATGAAAT
TGAAGCGTGACGCGGCGGACAAGCAGATGGAAAAGGGTCGCAAAGAGTTT
TTGCGCTTCATGAATTCTCAATATGACTAGATGGGCAAACATGTTGACGA
CAAGCCTAACGACCGACGTCACAGCAATGGCAGTGGCACCAGCAGCAAGG
GGCGAGACACAAAATATGACAGTGGCGACGGAAGCGGCAAGCATCACAAG
ACGATGAAGAAGCGGAAGCGCGATGAGGCAGACTCCCTTTCCTCTTCCTC
CCCCACCTCTTCCCCCTCCTCCTCCTCTGCCTTGTCAGCCTCAGACAACG
AGAGCAGCAGTGTTTCCTCTTCCTCAAATTCACTAGACGAGCGAAGCAGA
TCCAAGAAGAAGGCCAAGACCGAGAAGGAGGAAAAGAGAAAGTCCAAGGA
CAAAAAGTCCAAGAAGGAGAGTAAGAAACAGAGCGATAAGAAAGAGGGTA
AGAAAAGGCATAAAAAGGAGCACAAGAAAAGCATTAAAAAAAAGGAGAAG
AAGCGGAAGAGGGATAGAAGCAAGAAAAGGAAGCACTCATCGTCCTCCGT
CCACGGCTGCAGCAGCGATTCGAACAGCGACAACGACGTGCCACGCTCCG
CTATTTCTGGCAAGAAGATTAAGATGAAATTGAAGCGTGACGCGGCGGAC
AAGCAGATGGAAAAGGGTCGCAAAGAGTTTTTGCGCTTCATGAATTCTCA
ATATGACTAG
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Synonyms
Publications