jgi.p|Nanoce1779_2|575770, mRNA_1209 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575770
Unique NamemRNA_1209
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length908
Alignment locationscaffold_2:1506284..1507191 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575856
TrackFilteredModels2
ProteinId575770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1506284..1507191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575770gene_1209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575770mRNA_1209-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1209CDS_1209Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1209 ID=mRNA_1209|Name=jgi.p|Nanoce1779_2|575770|organism=Nannochloropsis oceanica|type=mRNA|length=908bp
TGCTGCTGCTGCTGCTGCTGCTGCGGGTAATTGGAGTTGGAGGCTGCATG
GTACGAAATGAGCGGGCCGGAATGGGAGGACGCAGAAGAGGGGTGAGAAG
GATGGGGGGAGGGAGCGGTGGAAGAAGGAGAACTTCTGGGATTTGTAGGA
GGACAGTTGCGGTAGATTGCCTGCAAGGAAGTTGAAGAAGAAGAAGAAGA
AGGAGGAGAAGAAGAAGAAGAAGAAGGTAGAGAAGCAGGACCAGAAGAGA
TGCTGGGTGCACAGTACCCGCGGGGAGGGGGTAGACCACCTGCTCTGCTG
CCACCGCTCCCATCCCCTCGTCCTGGATGATTCGGGTGGTAGCGAGATTG
TCGCGGGGGATAGGGCGTTGGTTGTTGTGGATGTTGTTGCTCTTGTACGG
CGGCGCTTGGATCTCCCCGTGGCCAAGGAGACGGTCGATGCTGCTGCTGT
TGTTGCGTTTGGTAGTGCTGCGGGTGATGGTGATGCAATTGCTGCTGCTG
GTGCTGTGGCGCTGGTGGTGATGGTGATGGTGGTGATGGTTGTTGTCGTG
GATTTTGTTGTTGTGGTTGTTGTTGGGGCGGCGGCTGCTGCTTCTGCTTC
TGCTGCTGCTGCTGCTGGTTCTGGTGGTGGGGATAGTTCATGCTACTGTT
AGCAATGCCGCCCTGGCAATCGCTGGTGGTGCTGCTCGACATGCTTACTG
TGCCAGCGGGTCTACGTGGCGTTGTGCGCGTGTGTCTGAAAGTGCTTTTC
TACGCGAGCTACACCGGCGTGCCTTGAAGTTTGGATGGAGGCAAGAATGA
ACAAGAGTGGTGGGTGGCCAGGCGGATGAGGAGGGGGATAGCTGCGGCAC
CGGATTCGTTCCCGTCAAGATCTACGTGTGCGTTTCGGTGCCCTTCTTCG
TTTCCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|575770

>mRNA_1209-protein ID=mRNA_1209-protein|Name=jgi.p|Nanoce1779_2|575770|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MIRVVARLSRGIGRWLLWMLLLLYGGAWISPWPRRRSMLLLLLRLVVLRV
MVMQLLLLVLWRWW*
back to top

mRNA from alignment at scaffold_2:1506284..1507191+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1209 ID=mRNA_1209|Name=jgi.p|Nanoce1779_2|575770|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_2:1506284..1507191+ (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCGGGTAATTGGAGTTGGAGGCTGCATG
GTACGAAATGAGCGGGCCGGAATGGGAGGACGCAGAAGAGGGGTGAGAAG
GATGGGGGGAGGGAGCGGTGGAAGAAGGAGAACTTCTGGGATTTGTAGGA
GGACAGTTGCGGTAGATTGCCTGCAAGGAAGTTGAAGAAGAAGAAGAAGA
AGGAGGAGAAGAAGAAGAAGAAGAAGGTAGAGAAGCAGGACCAGAAGAGA
TGCTGGGTGCACAGTACCCGCGGGGAGGGGGTAGACCACCTGCTCTGCTG
CCACCGCTCCCATCCCCTCGTCCTGGATGATTCGGGTGGTAGCGAGATTG
TCGCGGGGGATAGGGCGTTGGTTGTTGTGGATGTTGTTGCTCTTGTACGG
CGGCGCTTGGATCTCCCCGTGGCCAAGGAGACGGTCGATGCTGCTGCTGT
TGTTGCGTTTGGTAGTGCTGCGGGTGATGGTGATGCAATTGCTGCTGCTG
GTGCTGTGGCGCTGGTGGTGATGGTGATGGTGGTGATGGTTGTTGTCGTG
GATTTTGTTGTTGTGGTTGTTGTTGGGGCGGCGGCTGCTGCTTCTGCTTC
TGCTGCTGCTGCTGCTGGTTCTGGTGGTGGGGATAGTTCATGCTACTGTT
AGCAATGCCGCCCTGGCAATCGCTGGTGGTGCTGCTCGACATGCTTACTG
TGCCAGCGGGTCTACGTGGCGTTGTGCGCGTGTGTCTGAAAGTGCTTTTC
TACGCGAGCTACACCGGCGTGCCTTGAAGTTTGGATGGAGGCAAGAATGA
ACAAGAGTGGTGGGTGGCCAGGCGGATGAGGAGGGGGATAGCTGCGGCAC
CGGATTCGTTCCCGTCAAGATCTACGTGTGCGTTTCGGTGCCCTTCTTCG
TTTCCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_2:1506284..1507191+

>mRNA_1209 ID=mRNA_1209|Name=jgi.p|Nanoce1779_2|575770|organism=Nannochloropsis oceanica|type=CDS|length=195bp|location=Sequence derived from alignment at scaffold_2:1506284..1507191+ (Nannochloropsis oceanica)
ATGATTCGGGTGGTAGCGAGATTGTCGCGGGGGATAGGGCGTTGGTTGTT
GTGGATGTTGTTGCTCTTGTACGGCGGCGCTTGGATCTCCCCGTGGCCAA
GGAGACGGTCGATGCTGCTGCTGTTGTTGCGTTTGGTAGTGCTGCGGGTG
ATGGTGATGCAATTGCTGCTGCTGGTGCTGTGGCGCTGGTGGTGA
back to top
Synonyms
Publications